Compensation of the contrast and brightness attenuation with depth in confocal microscopy

Spring Conference on Computer Graphics, SCCG 2005 - Conference Proceedings

Volumn , Issue , 2005, Pages 225-228

  Čapek, Martin ^a   Kubinová, Lucie ^a   Hána, Karel ^b   Smrčka, Pavel ^b  

^a INSTITUTE OF PHYSIOLOGY   (Czech Republic)

^b CZECH TECHNICAL UNIVERSITY IN PRAGUE   (Czech Republic)

Author keywords

Brightness correction; Confocal microscopy; Contrast correction

Indexed keywords

ALGORITHMS; BIOLOGICAL ORGANS; FLUORESCENCE; GRAPH THEORY; IMAGE QUALITY; IMAGE RETRIEVAL; MICROSCOPIC EXAMINATION;

BIOLOGICAL SPECIMEN; CONFOCAL LASER SCANNING MICROSCOPE (CLSM); FLUORESCENT IMAGES; LIGHT LOSS DISTORTIONS;

IMAGE COMPRESSION;

EID: 33749011185     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1090122.1090159     Document Type: Conference Paper

References (9)

1. Diaspro, A. (ed.): Confocal and Two-Photon Microscopy, Foundation, Applications, and Advances. Wiley-Liss, Inc., New York, 2002.
2. Negahdaripour, S., Yu, C.-H.: A generalized brightness change model for computing optical flow. In Int. Conf. Computer Vision and Pattern Recognition, June 1994, 593-600.
3. Cox, I. J., Roy, S., Hingorani, S. L.: Dynamic Histogram Warping of Image Pairs for Constant Image Brightness. In IEEE Int. Cong. on Image Processing, 1995, 366-369.
4. Periaswamy, S., Farid, H.: Elastic Registration in the Presence of Intensity Variations. IEEE Trans. Med. Imaging, 22, 7 (July 2003), 865-874.
5. Kervrann, C., Legland, D., Pardini L.: Robust incremental compensation of the light attenuation with depth in 3D fluorescence microscopy. Journal of Microscopy, 215, 1 (June 2004), 297-314.
6. Nyúl, L. G., Udupa, J. K., Zhang, X.: New Variants of a Method of MRI Scale Standardization. IEEE Trans. Med. Imaging, 19, 2 (February 2000), 143-150.
7. Liljeborg A., Czader M., Porwit A.: A method to compensate for light attenuation with depth in three-dimensional DNA image cytometry using a confocal scanning laser microscope. Journal of Microscopy, 177, 2 (February 1995), 108-114.
8. Margadant F., Leemann T., Niederer P.: A precise light attenuation correction for confocal scanning microscopy with O(n4/3) computing time and O(n) memory requirements for n voxels. Journal of Microscopy, 182, 2 (May 1996), 121-132.
9. Wahlby, C., Sintorn, I.-M., Erlandson, F., Borgefors, G., Bengtsson, E.: Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue section. Journal of Microscopy, 215, 1 (July 2004), 67-76.