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Volumn 70, Issue 9, 2006, Pages 2213-2221

Characterization of the AP endonucleases from Thermoplasma volcanium and Lactobacillus plantarum: Contributions of two important tryptophan residues to AP site recognition

Author keywords

AP endonuclease; AP site recognizer; Lactobacillus plantarum; Mutational analysis; Thermoplasma volcanium

Indexed keywords

AP ENDONUCLEASE; AP SITE RECOGNIZERS; LACTOBACILLUS PLANTARUM; MUTATIONAL ANALYSIS; THERMOPLASMA VOLCANIUM;

EID: 33749000862     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.60153     Document Type: Article
Times cited : (9)

References (28)
  • 1
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl, T., Instability and decay of the primary structure of DNA. Nature, 362, 709-715 (1993).
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 2
    • 0035902108 scopus 로고    scopus 로고
    • Genome maintenance mechanisms for preventing cancer
    • Hoeijmakers, J. H., Genome maintenance mechanisms for preventing cancer. Nature, 411, 366-374 (2001).
    • (2001) Nature , vol.411 , pp. 366-374
    • Hoeijmakers, J.H.1
  • 4
    • 0942268168 scopus 로고    scopus 로고
    • The base excision repair: Mechanisms and its relevance for cancer susceptibility
    • Fortini, P., Pascucci, B., Parlanti, E., D'Errico, M., Simonelli, V., and Dogliotti, E., The base excision repair: mechanisms and its relevance for cancer susceptibility. Biochimie, 85, 1053-1071 (2003).
    • (2003) Biochimie , vol.85 , pp. 1053-1071
    • Fortini, P.1    Pascucci, B.2    Parlanti, E.3    D'Errico, M.4    Simonelli, V.5    Dogliotti, E.6
  • 5
    • 0035111895 scopus 로고    scopus 로고
    • Recent progress in the biology, chemistry and structural biology of DNA glycosylases
    • Schärer, O. D., and Jiricny, J., Recent progress in the biology, chemistry and structural biology of DNA glycosylases. Bioessays, 23, 270-281 (2001).
    • (2001) Bioessays , vol.23 , pp. 270-281
    • Schärer, O.D.1    Jiricny, J.2
  • 6
    • 0030971099 scopus 로고    scopus 로고
    • Translesional synthesis on DNA templates containing a single abasic site: A mechanistic study of the "A rule"
    • Shibutani, S., Takeshita, M., and Grollman, A. P., Translesional synthesis on DNA templates containing a single abasic site: a mechanistic study of the "A rule." J. Biol. Chem., 272, 13916-13922 (1997).
    • (1997) J. Biol. Chem. , vol.272 , pp. 13916-13922
    • Shibutani, S.1    Takeshita, M.2    Grollman, A.P.3
  • 7
    • 0024094108 scopus 로고
    • Nucleotide sequence of the xth gene of Escherichia coli K-12
    • Saporito, S. M., Smith-White, B. J., and Cunningham, R. P., Nucleotide sequence of the xth gene of Escherichia coli K-12. J. Bacteriol., 170, 4542-4547 (1988).
    • (1988) J. Bacteriol. , vol.170 , pp. 4542-4547
    • Saporito, S.M.1    Smith-White, B.J.2    Cunningham, R.P.3
  • 8
    • 0028700721 scopus 로고
    • Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin
    • Ogasawara, N., Nakai, S., and Yoshikawa, H., Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin. DNA Res., 1, 1-14 (1994).
    • (1994) DNA Res. , vol.1 , pp. 1-14
    • Ogasawara, N.1    Nakai, S.2    Yoshikawa, H.3
  • 9
    • 0024573275 scopus 로고
    • The exoA gene of Streptococcus pneumoniae and its product, a DNA exonuclease with apurinic endonuclease activity
    • Puyet, A., Greenberg, B., and Lacks, S. A., The exoA gene of Streptococcus pneumoniae and its product, a DNA exonuclease with apurinic endonuclease activity. J. Bacteriol., 171, 2278-2286 (1989).
    • (1989) J. Bacteriol. , vol.171 , pp. 2278-2286
    • Puyet, A.1    Greenberg, B.2    Lacks, S.A.3
  • 10
    • 0025785792 scopus 로고
    • Cloning and characterization of Rrp1, the gene encoding Drosophila strand transferase: Carboxy-terminal homology to DNA repair endo/exonucleases
    • Sander, M., Lowenhaupt, K., Lane, W. S., and Rich, A., Cloning and characterization of Rrp1, the gene encoding Drosophila strand transferase: carboxy-terminal homology to DNA repair endo/exonucleases. Nucleic Acids Res., 19, 4523-4529 (1991).
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4523-4529
    • Sander, M.1    Lowenhaupt, K.2    Lane, W.S.3    Rich, A.4
  • 11
    • 0029933834 scopus 로고    scopus 로고
    • Apurinic/apyrimidinic (AP) endonuclease from Dictyostelium discoideum: Cloning, nucleotide sequence and induction by sublethal levels of DNA damaging agents
    • Freeland, T. M., Guyer, R. B., Ling, A. Z., and Deering, R. A., Apurinic/apyrimidinic (AP) endonuclease from Dictyostelium discoideum: cloning, nucleotide sequence and induction by sublethal levels of DNA damaging agents. Nucleic Acids Res., 24, 1950-1953 (1996).
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1950-1953
    • Freeland, T.M.1    Guyer, R.B.2    Ling, A.Z.3    Deering, R.A.4
  • 12
    • 0028343506 scopus 로고
    • The Arabidopsis thaliana apurinic endonuclease Arp reduces human transcription factors Fos and Jun
    • Babiychuk, E., Kushnir, S., Van Montagu, M., and Inz, D., The Arabidopsis thaliana apurinic endonuclease Arp reduces human transcription factors Fos and Jun. Proc. Natl. Acad. Sci. USA, 91, 3299-3303 (1994).
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 3299-3303
    • Babiychuk, E.1    Kushnir, S.2    Van Montagu, M.3    Inz, D.4
  • 13
    • 0028275092 scopus 로고
    • Cloning of the multifunctional rat apurinic/apyrimidinic endonuclease (rAPEN)/redox factor from an immature T cell line
    • Wilson, T. M., Carney, J. P., and Kelley, M. R., Cloning of the multifunctional rat apurinic/apyrimidinic endonuclease (rAPEN)/redox factor from an immature T cell line. Nucleic Acids Res., 22, 530-531 (1994).
    • (1994) Nucleic Acids Res. , vol.22 , pp. 530-531
    • Wilson, T.M.1    Carney, J.P.2    Kelley, M.R.3
  • 14
    • 0025718595 scopus 로고
    • cDNA and deduced amino acid sequence of a mouse DNA repair enzyme (APEX nuclease) with significant homology to Escherichia coli exonuclease III
    • Seki, S., Akiyama, K., Watanabe, S., Hatsushika, M., Ikeda, S., and Tsutsui, K., cDNA and deduced amino acid sequence of a mouse DNA repair enzyme (APEX nuclease) with significant homology to Escherichia coli exonuclease III. J. Biol. Chem., 266, 20797-20802 (1991).
    • (1991) J. Biol. Chem. , vol.266 , pp. 20797-20802
    • Seki, S.1    Akiyama, K.2    Watanabe, S.3    Hatsushika, M.4    Ikeda, S.5    Tsutsui, K.6
  • 15
    • 0026070597 scopus 로고
    • Isolation of cDNA clones encoding an enzyme from bovine cells that repairs oxidative DNA damage in vitro: Homology with bacterial repair enzymes
    • Robson, C. N., Milne, A. M., Pappin, D. J., and Hickson, I. D., Isolation of cDNA clones encoding an enzyme from bovine cells that repairs oxidative DNA damage in vitro: homology with bacterial repair enzymes. Nucleic Acids Res., 19, 1087-1092 (1991).
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1087-1092
    • Robson, C.N.1    Milne, A.M.2    Pappin, D.J.3    Hickson, I.D.4
  • 16
    • 0026323008 scopus 로고
    • Cloning and expression of APE, the cDNA encoding the major human apurinic endonuclease: Definition of a family of DNA repair enzymes
    • Demple, B., Herman, T., and Chen, D. S., Cloning and expression of APE, the cDNA encoding the major human apurinic endonuclease: definition of a family of DNA repair enzymes. Proc. Natl. Acad. Sci. USA, 88, 11450-11454 (1991).
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 11450-11454
    • Demple, B.1    Herman, T.2    Chen, D.S.3
  • 17
    • 0026683715 scopus 로고
    • cDNA cloning, sequencing, expression and possible domain structure of human APEX nuclease homologous to Escherichia coli exonuclease III
    • Seki, S., Hatsushika, M., Watanabe, S., Akiyama, K., Nagao, K., and Tsutsui, K., cDNA cloning, sequencing, expression and possible domain structure of human APEX nuclease homologous to Escherichia coli exonuclease III. Biochim. Biophys. Acta, 1131, 287-299 (1992).
    • (1992) Biochim. Biophys. Acta , vol.1131 , pp. 287-299
    • Seki, S.1    Hatsushika, M.2    Watanabe, S.3    Akiyama, K.4    Nagao, K.5    Tsutsui, K.6
  • 18
    • 0028923440 scopus 로고
    • Structure and function of the multifunctional DNA-repair enzyme exonuclease III
    • Mol, C. D., Kuo, C. F., Thayer, M. M., Cunningham, R. P., and Tainer, J. A., Structure and function of the multifunctional DNA-repair enzyme exonuclease III. Nature, 374, 381-386 (1995).
    • (1995) Nature , vol.374 , pp. 381-386
    • Mol, C.D.1    Kuo, C.F.2    Thayer, M.M.3    Cunningham, R.P.4    Tainer, J.A.5
  • 19
    • 0030728449 scopus 로고    scopus 로고
    • The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites
    • Gorman, M. A., Morera, S., Rothwell, D. G., de La Fortelle, E., Mol, C. D., Tainer, J. A., Hickson, I. D., and Freemont, P. S., The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites. EMBO J., 16, 6548-6558 (1997).
    • (1997) EMBO J. , vol.16 , pp. 6548-6558
    • Gorman, M.A.1    Morera, S.2    Rothwell, D.G.3    De La Fortelle, E.4    Mol, C.D.5    Tainer, J.A.6    Hickson, I.D.7    Freemont, P.S.8
  • 20
    • 0034719372 scopus 로고    scopus 로고
    • DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination
    • Mol, C. D., Izumi, T., Mitra, S., and Tainer, J. A., DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination. Nature, 403, 451-456 (2000).
    • (2000) Nature , vol.403 , pp. 451-456
    • Mol, C.D.1    Izumi, T.2    Mitra, S.3    Tainer, J.A.4
  • 21
    • 0017255036 scopus 로고
    • Endonuclease II of Escherichia coli is exonuclease III
    • Weiss, B., Endonuclease II of Escherichia coli is exonuclease III. J. Biol. Chem., 251, 1896-1901 (1976).
    • (1976) J. Biol. Chem. , vol.251 , pp. 1896-1901
    • Weiss, B.1
  • 22
    • 0030787013 scopus 로고    scopus 로고
    • What structural features determine repair enzyme specificity and mechanism in chemically modified DNA?
    • Singer, B., and Hang, B., What structural features determine repair enzyme specificity and mechanism in chemically modified DNA? Chem. Res. Toxicol., 10, 713-732 (1997).
    • (1997) Chem. Res. Toxicol. , vol.10 , pp. 713-732
    • Singer, B.1    Hang, B.2
  • 23
    • 0029959079 scopus 로고    scopus 로고
    • Cleavage of single- and double-stranded DNAs containing an abasic residue by Escherichia coli exonuclease III (AP endonuclease VI)
    • Shida, T., Noda, M., and Sekiguchi, J., Cleavage of single- and double-stranded DNAs containing an abasic residue by Escherichia coli exonuclease III (AP endonuclease VI). Nucleic Acids Res., 24, 4572-4576 (1996).
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4572-4576
    • Shida, T.1    Noda, M.2    Sekiguchi, J.3
  • 24
    • 33645533295 scopus 로고    scopus 로고
    • Role of the tryptophan residue in the vicinity of the catalytic center of exonuclease III family AP endonucleases: AP site recognition mechanism
    • Kaneda, K., Sekiguchi, J., and Shida, T., Role of the tryptophan residue in the vicinity of the catalytic center of exonuclease III family AP endonucleases: AP site recognition mechanism. Nucleic Acids Res., 34, 1552-1563 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. 1552-1563
    • Kaneda, K.1    Sekiguchi, J.2    Shida, T.3
  • 25
    • 0033193618 scopus 로고    scopus 로고
    • Characterization of Bacillus subtilis ExoA protein: A multifunctional DNA-repair enzyme similar to the Escherichia coli Exonuclease III
    • Shida, T., Ogawa, T., Ogasawara, N., and Sekiguchi, J., Characterization of Bacillus subtilis ExoA protein: a multifunctional DNA-repair enzyme similar to the Escherichia coli Exonuclease III. Biosci. Biotechnol. Biochem., 63, 1528-1534 (1999).
    • (1999) Biosci. Biotechnol. Biochem. , vol.63 , pp. 1528-1534
    • Shida, T.1    Ogawa, T.2    Ogasawara, N.3    Sekiguchi, J.4
  • 27
    • 19744382860 scopus 로고    scopus 로고
    • Exonuclease III protection assay with FRET probe for detecting DNA-binding proteins
    • Wang, J., Li, T., Guo, X., and Lu, Z., Exonuclease III protection assay with FRET probe for detecting DNA-binding proteins. Nucleic Acids Res., 33, e23 (2005).
    • (2005) Nucleic Acids Res. , vol.33
    • Wang, J.1    Li, T.2    Guo, X.3    Lu, Z.4
  • 28
    • 0019332313 scopus 로고
    • Interaction of the cAMP receptor protein with the lac promoter
    • Simpson, R. B., Interaction of the cAMP receptor protein with the lac promoter. Nucleic Acids Res., 8, 759-766 (1980).
    • (1980) Nucleic Acids Res. , vol.8 , pp. 759-766
    • Simpson, R.B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.