Analysis of genetic structure of Jamunapari goats by microsatellite markers

Small Ruminant Research

Volumn 66, Issue 1-3, 2006, Pages 140-149

  Gour, Digpal Singh ^a   Malik, Geetu ^a   Ahlawat, S P S ^a   Pandey, A K ^a   Sharma, Rekha ^a   Gupta, Neelam ^a   Gupta, S C ^a   Bisen, P S ^b   Kumar, Dinesh ^a  

^a NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES   (India)

^b Bundelkhand University   (India)

Author keywords

Bottleneck; Genetic variation; Goat; India; Microsatellite loci; Population structure

Indexed keywords

CAPRA HIRCUS;

EID: 33748927953     PISSN: 09214488     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.smallrumres.2005.07.053     Document Type: Article

References (37)

1. Acharya, R.M., 1982. Sheep and goat breeds of India. FAO Animal Production and Health Paper 30. FAO, United Nations, Rome, Italy, pp. 1-190.
2. Alvarez L., Royo L.J., Fernandez I., Gutierrez J.P., Gomez E., and Goyache F. Genetic relationships and admixture among sheep breeds from Northern Spain assessed using microsatellites. J. Anim. Sci. 82 (2004) 2246-2252
3. Barker J.S.F., Tan S.G., Moore S.S., Mukherjee T.K., Matheson J.L., and Selvaraj O.S. Genetic variation within and relationships among populations of Asian goats (Capra hircus). J. Anim. Breed. Genet. 118 (2001) 213-233
4. Bassam B.J., Coetano-Anolles G., and Gresshoff P.M. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal. Biochem. 196 (1991) 80-83
5. Behara A.M.P., Colling D.T., Cothran E.G., and Gibson J.P. Genetic relationships between horse breeds based on microsatellite data: applications for livestock conservation. Proceedings of Sixth Wld. Cong. Genet. Appl. Livetock Prod., vol. 28 (1998) 119-122
6. Behl R., Sheoran N., Behl J., Vijh R.K., and Tantia M.S. Analysis of 22 heterologous microsatellite markers for genetic variability in Indian goats. Anim. Biotechnol. 14 (2003) 167-175
7. Boyce W.M., Hedrick P.W., Muggli-Cockett N.E., Kalinowski S., Penedo M.C., and Ramey R.R. Genetic variation of major histocompatibilty complex and microsatellite loci: a comparison in Bighorn sheep. Genetics 145 (1996) 421-433
8. Canon J., Checa M.L., Carleos C., Vega-Pla J.L., Vallego M., and Dunner S. The genetic structure of Spanish Celtic horse breeds inferred from microsatellite data. Anim. Genet. 31 (2000) 39-48
9. Chenyambuga S.W., Hanotte O., Hirbo J., Watts P.C., Kemp S.J., Kifaro G.C., Gwakisa P.S., Petersen P.H., and Rege J.E.O. Genetic characterization of indigenous goats of sub-saharan Africa using microsatellite DNA markers. Asian-Aust. J. Anim. Sci. 17 (2004) 445-452
10. Christiansen F.B., Frydenberg O., Gyldenholm A.O., and Simonsen V. Genetics of Zoarces populations. VI. Further evidence, based on age group samples, of a heterozygote deficit ESTIII polymorphism. Heriditas 77 (1974) 225-236
11. Cornuet J.M., and Luikart G. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144 (1996) 2001-2014
12. Devendra C. Prolific breeds of goat. In: Land R.B., and Robinson D.W. (Eds). Genetics of Reproduction in Sheep (1985), Butterworths Publication, London 69-80
13. Di Rienzo A., Peterson A.C., Garza J.C., Valdes A.M., Slatkin M., and Freimer N.B. Mutational process of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. U.S.A. 91 (1994) 3166-3170
14. FAO, 1995. Global Project for the Maintenance of Domestic Animal Genetic Diversity (MoDAD)-Draft Project Formulation Report, FAO, Rome, Italy.
15. Ganai N.A., and Yadav B.R. Genetic variation within and among three Indian breeds of goat using heterologous microsatellite markers. Anim. Biotechnol. 12 (2001) 121-136
16. Goldstein D.B., and Pollock D.D. Launching microsatellites: a review of mutation processes and methods of phylogenetic inference. J. Hered. 88 (1997) 335-342
17. Goudet J. FSTAT (version1.2): a computer programme to calculate F-statistics. J. Hered. 86 (1995) 485-486
18. Gupta S.C. New approaches for in situ and ex situ conservation of Livestock Germplasm. Indian J. Anim. Genet. Breed. 20 (2000) 72-84
19. Joshi M.B., Rout P.K., Mandal A.K., Tyler-Smith C., Singh L., and Thangaraj K. Phylogeography and origin of Indian domestic goats. Mol. Biol. Evol. 21 (2004) 454-462
20. Kim K.S., Yeo J.S., Lee J.W., Kim J.W., and Choi C.B. Genetic diversity of goats from Korea and China using microsatellite analysis. Asian-Aust. J. Anim. Sci. 15 (2002) 461-465
21. Kimura M., and Crow J.F. The number of alleles that can be maintained in a finite population. Genetics 49 (1964) 725-738
22. Kumar D., Dixit S.P., Sharma R., Pandey A.K., Sirohi G., Patel A.K., Aggarwal R.A.K., Verma N.K., Gour D.S., and Ahlawat S.P.S. Population structure, genetic variation and management of Marwari goats. Small Rumin. Res. 59 (2005) 41-48
23. Levene H. On a matching problem arising in genetics. Ann. Math. Stat. 20 (1949) 91-94
24. Lewontin R.C. The apportionment of human diversity. Evol. Biol. 6 (1972) 381-398
25. Luikart G., Biju-Duval M.P., Ertugrul O., Zagdsuren Y., Maudet C., and Taberlet P. Power of 22 microsatellite markers in fluorescent multiplexes for parentage testing in goats (Capra hircus). Anim. Genet. 30 (1999) 431-438
26. Manly B.F.J. The Statistics of Natural Selection (1985), Chapman and Hall, London pp. 272-282
27. Nei M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U.S.A. 70 (1973) 3321-3323
28. Nivsarkar A.E., Gupta S.C., and Vij P.K. Stemming the threat to Indian livestock. Diversity 12 (1996) 31-33
29. Ohta T., and Kimura M. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet. Res. Camb. 22 (1973) 201-204
30. Pamilo P. Effect of inbreeding on genetic relatedness. Hereditas 103 (1985) 195-200
31. Queller D.C., and Goodnight K.F. Estimating relatedness using genetic markers. Evolution 43 (1989) 258-275
32. Saitbekova N., Gaillard C., Obexer-Ruff G., and Dolf G. Genetic diversity in Swiss goat breeds based on microsatellite analysis. Anim. Genet. 30 (1999) 36-41
33. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual. second ed. (1989), Cold spring Harbour, Cold Spring Laboratory Press, NY
34. Singh H. Domestic Animals (1966), National Book Trust, India
35. Weir B.S., and Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 38 (1984) 1358-1370
36. Wright S. Evolution and the genetics of populations. Variability Within and Among Natural Populations vol. 4 (1978), University of Chicago Press, Chicago
37. Yeh, F.C., Yang, R.-C., Boyle, T.B.J., Ye, Z.-H., Mao, J.X. 1999. POPGENE Version 1.32, the User-friendly Shareware for Population Genetic Analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Canada (http://www.ualberta.ca/-fyeh/fyeh.).