메뉴 건너뛰기




Volumn 67, Issue 2, 2006, Pages 273-280

Rapid characterization of microbial biodegradation pathways by FT-IR spectroscopy

Author keywords

Biodegradation; Classification; FT IR; Genetic algorithm; Metabolic profile; Pathway; Pseudomonas putida NCIMB 9869

Indexed keywords

3 HYDROXYBENZOIC ACID; CARBON; CARBOXYLIC ACID; GENTISIC ACID; META CRESOL;

EID: 33748914092     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2006.04.009     Document Type: Article
Times cited : (35)

References (30)
  • 1
    • 0020361441 scopus 로고
    • The plasmid-coded metabolism of naphthalene and 2-methylnaphthalene in Pseudomonas strains-phenotypic changes correlated with structural modification of the plasmid Pww60-1
    • Cane P.A., and Williams P.A. The plasmid-coded metabolism of naphthalene and 2-methylnaphthalene in Pseudomonas strains-phenotypic changes correlated with structural modification of the plasmid Pww60-1. Journal of General Microbiology 128 (1982) 2281-2290
    • (1982) Journal of General Microbiology , vol.128 , pp. 2281-2290
    • Cane, P.A.1    Williams, P.A.2
  • 3
    • 0039136118 scopus 로고    scopus 로고
    • Purification and characterization of gentisate 1,2-dioxygenases from Pseudomonas alcaligenes NCIB 9867 and Pseudomonas putida NCIB 9869
    • Feng Y.M., Khoo H.E., and Poh C.L. Purification and characterization of gentisate 1,2-dioxygenases from Pseudomonas alcaligenes NCIB 9867 and Pseudomonas putida NCIB 9869. Applied and Environmental Microbiology 65 (1999) 946-950
    • (1999) Applied and Environmental Microbiology , vol.65 , pp. 946-950
    • Feng, Y.M.1    Khoo, H.E.2    Poh, C.L.3
  • 4
    • 0034959944 scopus 로고    scopus 로고
    • Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks
    • Fiehn O. Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks. Comparative and Functional Genomics 2 (2001) 155-168
    • (2001) Comparative and Functional Genomics , vol.2 , pp. 155-168
    • Fiehn, O.1
  • 5
    • 0031781727 scopus 로고    scopus 로고
    • Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks
    • Goodacre R., Timmins E.M., Burton R., Kaderbhai N., Woodward A.M., Kell D.B., and Rooney P.J. Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks. Microbiology-UK 144 (1998) 1157-1170
    • (1998) Microbiology-UK , vol.144 , pp. 1157-1170
    • Goodacre, R.1    Timmins, E.M.2    Burton, R.3    Kaderbhai, N.4    Woodward, A.M.5    Kell, D.B.6    Rooney, P.J.7
  • 6
    • 0033970940 scopus 로고    scopus 로고
    • Detection of the dipicolinic acid biomarker in Bacillus spores using Curie-point pyrolysis mass spectrometry and Fourier transform infrared spectroscopy
    • Goodacre R., Shann B., Gilbert R.J., Timmins E.M., McGovern A.C., Alsberg B.K., Kell D.B., and Logan N.A. Detection of the dipicolinic acid biomarker in Bacillus spores using Curie-point pyrolysis mass spectrometry and Fourier transform infrared spectroscopy. Analytical Chemistry 72 (2000) 119-127
    • (2000) Analytical Chemistry , vol.72 , pp. 119-127
    • Goodacre, R.1    Shann, B.2    Gilbert, R.J.3    Timmins, E.M.4    McGovern, A.C.5    Alsberg, B.K.6    Kell, D.B.7    Logan, N.A.8
  • 8
    • 0016659231 scopus 로고
    • Pathways for the degradation of m-cresol and p-cresol by Pseudomonas putida
    • Hopper D.J., and Taylor D.G. Pathways for the degradation of m-cresol and p-cresol by Pseudomonas putida. Journal of Bacteriology 122 (1975) 1-6
    • (1975) Journal of Bacteriology , vol.122 , pp. 1-6
    • Hopper, D.J.1    Taylor, D.G.2
  • 9
    • 0018942997 scopus 로고
    • Regulation of enzymes of the 3,5-xylenol-degradative pathway in Pseudomonas putida: evidence for a plasmid
    • Hopper D.J., and Kemp P.D. Regulation of enzymes of the 3,5-xylenol-degradative pathway in Pseudomonas putida: evidence for a plasmid. Journal of Bacteriology 142 (1980) 21-26
    • (1980) Journal of Bacteriology , vol.142 , pp. 21-26
    • Hopper, D.J.1    Kemp, P.D.2
  • 12
  • 13
    • 0025785284 scopus 로고
    • Specific deletion of a large segment of pRA500-A 3,5-xylenol degradative plasmid
    • Jain R.K., Bayly R.C., and Skurray R.A. Specific deletion of a large segment of pRA500-A 3,5-xylenol degradative plasmid. Letters in Applied Microbiology 12 (1991) 216-220
    • (1991) Letters in Applied Microbiology , vol.12 , pp. 216-220
    • Jain, R.K.1    Bayly, R.C.2    Skurray, R.A.3
  • 14
    • 0346100346 scopus 로고    scopus 로고
    • Discrimination of bacteria using surface-enhanced Raman spectroscopy
    • Jarvis R.M., and Goodacre R. Discrimination of bacteria using surface-enhanced Raman spectroscopy. Analytical Chemistry 76 (2004) 40-47
    • (2004) Analytical Chemistry , vol.76 , pp. 40-47
    • Jarvis, R.M.1    Goodacre, R.2
  • 15
    • 1842430981 scopus 로고    scopus 로고
    • Ultra-violet resonance Raman spectroscopy for the rapid discrimination of urinary tract infection bacteria
    • Jarvis R.M., and Goodacre R. Ultra-violet resonance Raman spectroscopy for the rapid discrimination of urinary tract infection bacteria. FEMS Microbiology Letters 232 (2004) 127-132
    • (2004) FEMS Microbiology Letters , vol.232 , pp. 127-132
    • Jarvis, R.M.1    Goodacre, R.2
  • 16
    • 16444371874 scopus 로고    scopus 로고
    • Genetic algorithm optimization for pre-processing and variable selection of spectroscopic data
    • Jarvis R.M., and Goodacre R. Genetic algorithm optimization for pre-processing and variable selection of spectroscopic data. Bioinformatics 21 (2005) 860-868
    • (2005) Bioinformatics , vol.21 , pp. 860-868
    • Jarvis, R.M.1    Goodacre, R.2
  • 18
    • 0014503154 scopus 로고
    • Transformation of Acinetobacter calcoaceticus (Bacterium anitratum)
    • Juni E., and Janik A. Transformation of Acinetobacter calcoaceticus (Bacterium anitratum). Journal of Bacteriology 98 (1969) 281-288
    • (1969) Journal of Bacteriology , vol.98 , pp. 281-288
    • Juni, E.1    Janik, A.2
  • 20
    • 0024099724 scopus 로고
    • Bacterial oxidation of chemical carcinogens-formation of polycyclic aromatic-acids from benz-a-anthracene
    • Mahaffey W.R., Gibson D.T., and Cerniglia C.E. Bacterial oxidation of chemical carcinogens-formation of polycyclic aromatic-acids from benz-a-anthracene. Applied and Environmental Microbiology 54 (1988) 2415-2423
    • (1988) Applied and Environmental Microbiology , vol.54 , pp. 2415-2423
    • Mahaffey, W.R.1    Gibson, D.T.2    Cerniglia, C.E.3
  • 25
    • 0036263746 scopus 로고    scopus 로고
    • Intraspecific diversity of Brevibacterium linens, Corynebacterium glutamicum and Rhodococcus erythropolis based on partial 16S rDNA sequence analysis and Fourier-transform infrared (FT-IR) spectroscopy
    • Oberreuter H., Charzinski J., and Scherer S. Intraspecific diversity of Brevibacterium linens, Corynebacterium glutamicum and Rhodococcus erythropolis based on partial 16S rDNA sequence analysis and Fourier-transform infrared (FT-IR) spectroscopy. Microbiology-Sgm 148 (2002) 1523-1532
    • (2002) Microbiology-Sgm , vol.148 , pp. 1523-1532
    • Oberreuter, H.1    Charzinski, J.2    Scherer, S.3
  • 26
    • 0034669676 scopus 로고    scopus 로고
    • Multidimensional information on the chemical composition of single bacterial cells by confocal Raman microspectroscopy
    • Schuster K.C., Reese I., Urlaub E., Gapes J.R., and Lendl B. Multidimensional information on the chemical composition of single bacterial cells by confocal Raman microspectroscopy. Analytical Chemistry 72 (2000) 5529-5534
    • (2000) Analytical Chemistry , vol.72 , pp. 5529-5534
    • Schuster, K.C.1    Reese, I.2    Urlaub, E.3    Gapes, J.R.4    Lendl, B.5
  • 27
    • 0033805289 scopus 로고    scopus 로고
    • Single-cell analysis of bacteria by Raman microscopy: spectral information on the chemical composition of cells and on the heterogeneity in a culture
    • Schuster K.C., Urlaub E., and Gapes J.R. Single-cell analysis of bacteria by Raman microscopy: spectral information on the chemical composition of cells and on the heterogeneity in a culture. Journal of Microbiological Methods 42 (2000) 29-38
    • (2000) Journal of Microbiological Methods , vol.42 , pp. 29-38
    • Schuster, K.C.1    Urlaub, E.2    Gapes, J.R.3
  • 28
    • 12144274032 scopus 로고    scopus 로고
    • Insight into pollutant bioavailability and toxicity through Raman confocal microscopy
    • Singer A.C., Huang W.E., Helm J., and Thompson I.P. Insight into pollutant bioavailability and toxicity through Raman confocal microscopy. Journal of Microbiological Methods 60 (2005) 417-422
    • (2005) Journal of Microbiological Methods , vol.60 , pp. 417-422
    • Singer, A.C.1    Huang, W.E.2    Helm, J.3    Thompson, I.P.4
  • 29
    • 3042772559 scopus 로고    scopus 로고
    • Proteome analysis of gentisate-induced response in Pseudomonas alcaligenes NCIB 9867
    • Zhao B., Yeo C.C., Lee C.C., Geng A., Chew F.T., and Poh C.L. Proteome analysis of gentisate-induced response in Pseudomonas alcaligenes NCIB 9867. Proteomics 4 (2004) 2028-2036
    • (2004) Proteomics , vol.4 , pp. 2028-2036
    • Zhao, B.1    Yeo, C.C.2    Lee, C.C.3    Geng, A.4    Chew, F.T.5    Poh, C.L.6
  • 30
    • 18844410520 scopus 로고    scopus 로고
    • Proteome investigation of the global regulatory role of sigma(54) in response to gentisate induction in Pseudomonas alcaligenes NCIMB 9867
    • Zhao B., Yeo C.C., and Poh C.L. Proteome investigation of the global regulatory role of sigma(54) in response to gentisate induction in Pseudomonas alcaligenes NCIMB 9867. Proteomics 5 (2005) 1868-1876
    • (2005) Proteomics , vol.5 , pp. 1868-1876
    • Zhao, B.1    Yeo, C.C.2    Poh, C.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.