Erratum to "Structure of the SCAN Domain from the Tumor Suppressor Protein MZF1" [J. Mol. Biol. 363 (2006) 137-147] (DOI:10.1016/j.jmb.2006.07.063);Structure of the SCAN Domain from the Tumor Suppressor protein MZF1

Journal of Molecular Biology

Volumn 363, Issue 1, 2006, Pages 137-147

  Peterson, Francis C ^a   Hayes, Paulette L ^a   Waltner, Jeanette K ^a   Heisner, Alicia K ^a   Jensen, Davin R ^a   Sander, Tara L ^a   Volkman, Brian F ^a  

^a MEDICAL COLLEGE OF WISCONSIN   (United States)

Author keywords

fluorescence polarization; homodimer; NMR; SCAN domain; transcription factor

Indexed keywords

DIMER; MONOMER; MYELOID ZINC FINGER PROTEIN 1; TRANSCRIPTION FACTOR; TRYPTOPHAN; TUMOR SUPPRESSOR PROTEIN; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

ALPHA HELIX; ARTICLE; FLUORESCENCE POLARIZATION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN INTERACTION; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; TUMOR SUPPRESSOR GENE; ZINC FINGER MOTIF;

EID: 33748804696     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2006.07.098     Document Type: Erratum

References (46)

1. Pengue G., Calabro V., Bartoli P.C., Pagliuca A., and Lania L. Repression of transcriptional activity at a distance by the evolutionarily conserved KRAB domain present in a subfamily of zinc finger proteins. Nucl. Acids Res. 22 (1994) 2908-2914
2. Williams A.J., Khachigian L.M., Shows T., and Collins T. Isolation and characterization of a novel zinc-finger protein with transcription repressor activity. J. Biol. Chem. 270 (1995) 22143-22152
3. Williams A.J., Blacklow S.C., and Collins T. The zinc finger-associated SCAN box is a conserved oligomerization domain. Mol. Cell. Biol. 19 (1999) 8526-8535
4. Sander T.L., Haas A.L., Peterson M.J., and Morris J.F. Identification of a novel SCAN box-related protein that interacts with MZF1B. The leucine-rich SCAN box mediates hetero- and homoprotein associations. J. Biol. Chem. 275 (2000) 12857-12867
5. Schumacher C., Wang H., Honer C., Ding W., Koehn J., Lawrence Q., et al. The SCAN domain mediates selective oligomerization. J. Biol. Chem. 275 (2000) 17173-17179
6. Stone J.R., Maki J.L., Blacklow S.C., and Collins T. The SCAN domain of ZNF174 is a dimer. J. Biol. Chem. 277 (2002) 5448-5452
7. Collins T., and Sander T.L. The superfamily of SCAN domain containing zinc finger transcription factors. In: Iuchi S., and Kuldell N. (Eds). Zinc Finger Proteins: From Atomic Contact to Cellular Function vol. 22 (2004), Landes Bioscience, Georgetown, TX 154-165
8. Sander T.L., Stringer K.F., Maki J.L., Szauter P., Stone J.R., and Collins T. The SCAN domain defines a large family of zinc finger transcription factors. Gene 310 (2003) 29-38
9. Nam K., Honer C., and Schumacher C. Structural components of SCAN-domain dimerizations. Proteins: Struct. Funct. Genet. 56 (2004) 685-692
10. Ivanov D., Stone J.R., Maki J.L., Collins T., and Wagner G. Mammalian SCAN domain dimer is a domain-swapped homolog of the HIV capsid C-terminal domain. Mol. Cell 17 (2005) 137-143
11. Hromas R., Collins S.J., Hickstein D., Raskind W., Deaven L.L., O'Hara P., et al. A retinoic acid-responsive human zinc finger gene, MZF-1, preferentially expressed in myeloid cells. J. Biol. Chem. 266 (1991) 14183-14187
12. Peterson M.J., and Morris J.F. Human myeloid zinc finger gene MZF produces multiple transcripts and encodes a SCAN box protein. Gene 254 (2000) 105-118
13. Bavisotto L., Kaushansky K., Lin N., and Hromas R. Antisense oligonucleotides from the stage-specific myeloid zinc finger gene MZF-1 inhibit granulopoiesis in vitro. J. Exp. Med. 174 (1991) 1097-1101
14. Gaboli M., Kotsi P.A., Gurrieri C., Cattoretti G., Ronchetti S., Cordon-Cardo C., et al. Mzf1 controls cell proliferation and tumorigenesis. Genes Dev. 15 (2001) 1625-1630
15. Gamble T.R., Yoo S., Vajdos F.F., von Schwedler U.K., Worthylake D.K., Wang H., et al. Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein. Science 278 (1997) 849-853
16. Sampson D.A., Wang M., and Matunis M.J. The small ubiquitin-like modifier-1 (SUMO-1) consensus sequence mediates Ubc9 binding and is essential for SUMO-1 modification. J. Biol. Chem. 276 (2001) 21664-21669
17. Altieri A.S., Hinton D.P., and Byrd R.A. Association of biomolecular Systems via pulsed field gradient NMR self-diffusion measurements. J. Am. Chem. Soc. 117 (1995) 7566-7567
18. Veldkamp C.T., Peterson F.C., Pelzek A.J., and Volkman B.F. The monomer-dimer equilibrium of stromal cell-derived factor-1 (CXCL 12) is altered by pH, phosphate, sulfate, and heparin. Protein Sci. 14 (2005) 1071-1081
19. Walters K.J., Ferentz A.E., Hare B.J., Hidalgo P., Jasanoff A., Matsuo H., and Wagner G. Characterizing protein-protein complexes and oligomers by nuclear magnetic resonance spectroscopy. Methods Enzymol. 339 (2001) 238-258
20. 13C scalar coupling constants in isotope-filtered NMR experiments. J. Am. Chem. Soc. 121 (1999) 5346-5347
21. Ye Y., and Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics 19 (2003) ii246-ii255
22. Krissinel E., and Henrick K. Detection of Protein Assemblies in Crystals (2005), Lecture Notes in Computer Science, Springer-Verlag, Berlin/Heidelberg
23. Ding F., Prutzman K.C., Campbell S.L., and Dokholyan N.V. Topological determinants of protein domain swapping. Structure 14 (2006) 5-14
24. Lamb P., and McKnight S.L. Diversity and specificity in transcriptional regulation: the benefits of heterotypic dimerization. Trends Biochem. Sci. 16 (1991) 417-422
25. Vinson C., Myakishev M., Acharya A., Mir A.A., Moll J.R., and Bonovich M. Classification of human B-ZIP proteins based on dimerization properties. Mol. Cell. Biol. 22 (2002) 6321-6335
26. Halazonetis T.D., Georgopoulos K., Greenberg M.E., and Leder P. c-Jun dimerizes with itself and with c-Fos, forming complexes of different DNA binding affinities. Cell 55 (1988) 917-924
27. Ogawa H., Ueda T., Aoyama T., Aronheim A., Nagata S., and Fukunaga R. A SWI2/SNF2-type ATPase/helicase protein, mDomino, interacts with myeloid zinc finger protein 2A (MZF-2A) to regulate its transcriptional activity. Genes Cells 8 (2003) 325-339
28. Murai K., Murakami H., and Nagata S. Myeloid-specific transcriptional activation by murine myeloid zinc-finger protein 2. Proc. Natl Acad. Sci. USA 95 (1998) 3461-3466
29. Ogawa H., Murayama A., Nagata S., and Fukunaga R. Regulation of myeloid zinc finger protein 2A transactivation activity through phosphorylation by mitogen-activated protein kinases. J. Biol. Chem. 278 (2003) 2921-2927
30. Sander T.L., and Morris J.F. Characterization of the SCAN box encoding RAZ1 gene: analysis of cDNA transcripts, expression, and cellular localization. Gene 296 (2002) 53-64
31. Porsch-Ozcurumez M., Langmann T., Heimerl S., Borsukova H., Kaminski W.E., Drobnik W., et al. The zinc finger protein 202 (ZNF202) is a transcriptional repressor of ATP binding cassette transporter A1 (ABCA1) and ABCG1 gene expression and a modulator of cellular lipid efflux. J. Biol. Chem. 276 (2001) 12427-12433
32. Castillo G., Brun R.P., Rosenfield J.K., Hauser S., Park C.W., Troy A.E., et al. An adipogenic cofactor bound by the differentiation domain of PPARgamma. EMBO J. 18 (1999) 3676-3687
33. Babb R., and Bowen B.R. SDP1 is a peroxisome-proliferator-activated receptor gamma 2 co-activator that binds through its SCAN domain. Biochem. J. 370 (2003) 719-727
34. Suzawa M., Takada I., Yanagisawa J., Ohtake F., Ogawa S., Yamauchi T., et al. Cytokines suppress adipogenesis and PPAR-gamma function through the TAK1/TAB1/NIK cascade. Nature Cell. Biol. 5 (2003) 224-230
35. Waltner J.K., Peterson F.C., Lytle B.L., and Volkman B.F. Structure of the B3 domain from Arabidopsis thaliana protein At1g16640. Protein Sci. 14 (2005) 2478-2483
36. Maniatis T., Fritsch E.F., and Sambrook J. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press (1986), Cold Spring Harbor, NY
37. Lytle B.L., Peterson F.C., Qiu S.H., Luo M., Zhao Q., Markley J.L., and Volkman B.F. Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B. J. Biol. Chem. 279 (2004) 46787-46793
38. Delaglio F., Grzesiek S., Vuister G.W., Zhu G., Pfeifer J., and Bax A. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6 (1995) 277-293
39. Bartels C., Billeter M., Güntert P., and Wüthrich K. Automated Sequence-specific NMR assignments of homologous proteins using the program GARANT. J. Biomol. NMR 7 (1996) 207-213
40. Bartels C., Xia T.-H., Billeter M., Güntert P., and Wüthrich K. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR 5 (1995) 1-10
41. Cornilescu G., Delaglio F., and Bax A. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13 (1999) 289-302
42. Herrmann T., Guntert P., and Wuthrich K. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol. 319 (2002) 209-227
43. Linge J.P., Williams M.A., Spronk C.A., Bonvin A.M., and Nilges M. Refinement of protein structures in explicit solvent. Proteins: Struct. Funct. Genet. 50 (2003) 496-506
44. Strait B.J., and Dewey T.G. The Shannon information entropy of protein sequences. Biophys. J. 71 (1996) 148-155
45. Valdar W.S. Scoring residue conservation. Proteins 48 (2002) 227-241
46. Koradi R., Billeter M., and Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graphics 14 (1996) 51-55