-
1
-
-
0037657894
-
Photoactive yellow protein: a prototypic PAS domain sensory protein and development of a common signaling mechanism
-
Cusanovich M.A., and Meyer T.E. Photoactive yellow protein: a prototypic PAS domain sensory protein and development of a common signaling mechanism. Biochemistry 42 (2003) 4759-4770
-
(2003)
Biochemistry
, vol.42
, pp. 4759-4770
-
-
Cusanovich, M.A.1
Meyer, T.E.2
-
2
-
-
0037468225
-
Photoactive yellow protein, a new type of photoreceptor protein: will this "yellow lab" bring us where we want to go?
-
Hellingwerf K.J., Hendriks J., and Gensch T. Photoactive yellow protein, a new type of photoreceptor protein: will this "yellow lab" bring us where we want to go?. J. Phys. Chem. A 107 (2003) 1082-1094
-
(2003)
J. Phys. Chem. A
, vol.107
, pp. 1082-1094
-
-
Hellingwerf, K.J.1
Hendriks, J.2
Gensch, T.3
-
3
-
-
0029110488
-
1. 4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore
-
Borgstahl G.E.O., Williams D.R., and Getzoff E.D. 1. 4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 34 (1995) 6278-6287
-
(1995)
Biochemistry
, vol.34
, pp. 6278-6287
-
-
Borgstahl, G.E.O.1
Williams, D.R.2
Getzoff, E.D.3
-
4
-
-
0037596438
-
Solution structure and backbone dynamics of the photoactive yellow protein
-
Düx P., Rubinstenn G., Vuister G.W., Boelens R., Mulder F.A.A., Hård K., et al. Solution structure and backbone dynamics of the photoactive yellow protein. Biochemistry 37 (1998) 12689-12699
-
(1998)
Biochemistry
, vol.37
, pp. 12689-12699
-
-
Düx, P.1
Rubinstenn, G.2
Vuister, G.W.3
Boelens, R.4
Mulder, F.A.A.5
Hård, K.6
-
5
-
-
0028577744
-
Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry
-
Baca M., Borgstahl G.E.O., Boissinot M., Burke P.M., Williams D.R., Slater K.A., and Getzoff E.D. Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry. Biochemistry 33 (1994) 14369-14377
-
(1994)
Biochemistry
, vol.33
, pp. 14369-14377
-
-
Baca, M.1
Borgstahl, G.E.O.2
Boissinot, M.3
Burke, P.M.4
Williams, D.R.5
Slater, K.A.6
Getzoff, E.D.7
-
6
-
-
0027940414
-
Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry
-
Hoff W.D., Düx P., Hård K., Devreese B., Nugteren-Roodzant I.M., Crielaard W., et al. Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry. Biochemistry 33 (1994) 13959-13962
-
(1994)
Biochemistry
, vol.33
, pp. 13959-13962
-
-
Hoff, W.D.1
Düx, P.2
Hård, K.3
Devreese, B.4
Nugteren-Roodzant, I.M.5
Crielaard, W.6
-
7
-
-
0023152468
-
Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin
-
Meyer T.E., Yakali E., Cusanovich M.A., and Tollin G. Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin. Biochemistry 26 (1987) 418-423
-
(1987)
Biochemistry
, vol.26
, pp. 418-423
-
-
Meyer, T.E.1
Yakali, E.2
Cusanovich, M.A.3
Tollin, G.4
-
8
-
-
0028100905
-
Measurement and global analysis of the absorbance changes in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila
-
Hoff W.D., van Stokkum I.H., van Ramesdonk H.J., van Brederode M.E., Brouwer A.M., Fitch J.C., et al. Measurement and global analysis of the absorbance changes in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila. Biophys. J. 67 (1994) 1691-1705
-
(1994)
Biophys. J.
, vol.67
, pp. 1691-1705
-
-
Hoff, W.D.1
van Stokkum, I.H.2
van Ramesdonk, H.J.3
van Brederode, M.E.4
Brouwer, A.M.5
Fitch, J.C.6
-
9
-
-
0032809454
-
Femtosecond spectroscopic observations of initial intermediates in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila
-
Devanathan S., Pacheco A., Ujj L., Cusanovich M., Tollin G., Lin S., and Woodbury N. Femtosecond spectroscopic observations of initial intermediates in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila. Biophys. J. 77 (1999) 1017-1023
-
(1999)
Biophys. J.
, vol.77
, pp. 1017-1023
-
-
Devanathan, S.1
Pacheco, A.2
Ujj, L.3
Cusanovich, M.4
Tollin, G.5
Lin, S.6
Woodbury, N.7
-
10
-
-
0032568630
-
Photoactive yellow protein: a structural prototoype for the three-dimensional fold of the PAS domain superfamiliy
-
Pellequer J.-L., Wager-Smith K.A., Kay S.A., and Getzoff E.D. Photoactive yellow protein: a structural prototoype for the three-dimensional fold of the PAS domain superfamiliy. Proc. Natl Acad. Sci. USA 95 (1998) 5884-5890
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 5884-5890
-
-
Pellequer, J.-L.1
Wager-Smith, K.A.2
Kay, S.A.3
Getzoff, E.D.4
-
11
-
-
0032990441
-
PAS domains: internal sensors of oxygen, redox potential, and light
-
Taylor B.L., and Zhulin I.B. PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63 (1999) 479-506
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 479-506
-
-
Taylor, B.L.1
Zhulin, I.B.2
-
12
-
-
0043125483
-
Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation
-
Getzoff E.D., Gutwin K.N., and Genick U.K. Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation. Nature Struct. Biol. 10 (2003) 663-668
-
(2003)
Nature Struct. Biol.
, vol.10
, pp. 663-668
-
-
Getzoff, E.D.1
Gutwin, K.N.2
Genick, U.K.3
-
14
-
-
0031039399
-
Structure of a photocycle intermediate by millisecond time-resolved crystallography
-
Genick U.K., Borgstahl G.E.O., Ng K., Ren Z., Pradervand C., Burke P.M., et al. Structure of a photocycle intermediate by millisecond time-resolved crystallography. Science 275 (1997) 1471-1475
-
(1997)
Science
, vol.275
, pp. 1471-1475
-
-
Genick, U.K.1
Borgstahl, G.E.O.2
Ng, K.3
Ren, Z.4
Pradervand, C.5
Burke, P.M.6
-
15
-
-
0032510475
-
Structure at 0.85 Å resolution of an early protein photocycle intermediate
-
Genick U.K., Soltis S.M., Kuhn P., Canestrelli I.L., and Getzoff E.D. Structure at 0.85 Å resolution of an early protein photocycle intermediate. Nature 392 (1998) 206-209
-
(1998)
Nature
, vol.392
, pp. 206-209
-
-
Genick, U.K.1
Soltis, S.M.2
Kuhn, P.3
Canestrelli, I.L.4
Getzoff, E.D.5
-
16
-
-
4644242592
-
Structural heterogeneity of cryotrapped intermediates in the bacterial blue light photoreceptor, photoactive yellow protein
-
Anderson S., Srajer V., and Moffat K. Structural heterogeneity of cryotrapped intermediates in the bacterial blue light photoreceptor, photoactive yellow protein. Photochem. Photobiol. 80 (2004) 7-14
-
(2004)
Photochem. Photobiol.
, vol.80
, pp. 7-14
-
-
Anderson, S.1
Srajer, V.2
Moffat, K.3
-
17
-
-
1842738214
-
Protein kinetics: structures of intermediates and reaction mechanism from time-resolved X-ray data
-
Schmidt M., Pahl R., Srajer V., Anderson S., Ren Z., Ihee H., et al. Protein kinetics: structures of intermediates and reaction mechanism from time-resolved X-ray data. Proc. Natl Acad. Sci. USA 101 (2004) 4799-4804
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 4799-4804
-
-
Schmidt, M.1
Pahl, R.2
Srajer, V.3
Anderson, S.4
Ren, Z.5
Ihee, H.6
-
18
-
-
21044432995
-
Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds
-
Ihee H., Rajagopal S., Srajer V., Pahl R., Anderson S., Schmidt M., et al. Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds. Proc. Natl Acad. Sci. USA 102 (2005) 7145-7150
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 7145-7150
-
-
Ihee, H.1
Rajagopal, S.2
Srajer, V.3
Pahl, R.4
Anderson, S.5
Schmidt, M.6
-
19
-
-
0024730905
-
Photoactive yellow protein from the purple phototrophic bacterium, Ectothiorhodospira halophila. Qunatum yield of photobleaching and effects of temperature, alcohols, glycerol, and sucrose on kinetics of photobleaching and recovery
-
Meyer T.E., Tollin G., Hazzard J.H., and Cusanovich M.A. Photoactive yellow protein from the purple phototrophic bacterium, Ectothiorhodospira halophila. Qunatum yield of photobleaching and effects of temperature, alcohols, glycerol, and sucrose on kinetics of photobleaching and recovery. Biophys. J. 56 (1989) 559-564
-
(1989)
Biophys. J.
, vol.56
, pp. 559-564
-
-
Meyer, T.E.1
Tollin, G.2
Hazzard, J.H.3
Cusanovich, M.A.4
-
20
-
-
0029950952
-
Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein
-
van Brederode M.E., Hoff W.D., van Stokkum I.H.M., Groot M.L., and Hellingwerf K.J. Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein. Biophys. J. 71 (1996) 365-380
-
(1996)
Biophys. J.
, vol.71
, pp. 365-380
-
-
van Brederode, M.E.1
Hoff, W.D.2
van Stokkum, I.H.M.3
Groot, M.L.4
Hellingwerf, K.J.5
-
21
-
-
0033579823
-
Global conformational changes upon receptor stimulation in photoactive yellow protein
-
Hoff W.D., Xie A., van Stokkum I.H.M., Tang X.J., Gural J., Kroon A.R., and Hellingwerf K.J. Global conformational changes upon receptor stimulation in photoactive yellow protein. Biochemistry 38 (1999) 1009-1017
-
(1999)
Biochemistry
, vol.38
, pp. 1009-1017
-
-
Hoff, W.D.1
Xie, A.2
van Stokkum, I.H.M.3
Tang, X.J.4
Gural, J.5
Kroon, A.R.6
Hellingwerf, K.J.7
-
22
-
-
0028801885
-
Photobleaching of the photoactive yellow protein from Ectothiorhodospira halophila promotes binding to lipid bilayers-Evidence from surface plasmon resonance spectroscopy
-
Salamon Z., Meyer T.E., and Tollin G. Photobleaching of the photoactive yellow protein from Ectothiorhodospira halophila promotes binding to lipid bilayers-Evidence from surface plasmon resonance spectroscopy. Biophys. J. 68 (1995) 648-654
-
(1995)
Biophys. J.
, vol.68
, pp. 648-654
-
-
Salamon, Z.1
Meyer, T.E.2
Tollin, G.3
-
23
-
-
0031821274
-
Structural and dynamic changes of photoactive yellow protein during its photocyclce in solution
-
Rubinstenn G., Vuister G.W., Mulder F.A.A., Düx P.E., Boelens R., Hellingwerf K.J., and Kaptein R. Structural and dynamic changes of photoactive yellow protein during its photocyclce in solution. Nature Struct. Biol. 5 (1998) 568-570
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 568-570
-
-
Rubinstenn, G.1
Vuister, G.W.2
Mulder, F.A.A.3
Düx, P.E.4
Boelens, R.5
Hellingwerf, K.J.6
Kaptein, R.7
-
24
-
-
0034727659
-
Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies
-
Craven C.J., Derix N.M., Hendriks J., Boelens R., Hellingwerf K.J., and Kaptein R. Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies. Biochemistry 39 (2000) 14392-14399
-
(2000)
Biochemistry
, vol.39
, pp. 14392-14399
-
-
Craven, C.J.1
Derix, N.M.2
Hendriks, J.3
Boelens, R.4
Hellingwerf, K.J.5
Kaptein, R.6
-
25
-
-
0034745934
-
Structure of the I1 early intermediate of photoactive yellow protein by FTIR spectroscopy
-
Brudler R., Rammelsberg R., Woo T.T., Getzoff E.D., and Gerwert K. Structure of the I1 early intermediate of photoactive yellow protein by FTIR spectroscopy. Nature Struct. Biol. 8 (2001) 265-270
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 265-270
-
-
Brudler, R.1
Rammelsberg, R.2
Woo, T.T.3
Getzoff, E.D.4
Gerwert, K.5
-
26
-
-
0035852878
-
Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation
-
Xie A., Kelemen L., Hendriks J., White B.J., Hellingwerf K.J., and Hoff W.D. Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation. Biochemistry 40 (2001) 1510-1517
-
(2001)
Biochemistry
, vol.40
, pp. 1510-1517
-
-
Xie, A.1
Kelemen, L.2
Hendriks, J.3
White, B.J.4
Hellingwerf, K.J.5
Hoff, W.D.6
-
27
-
-
0035877707
-
PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation
-
Lee B.C., Croonquist P.A., Sosnick T.R., and Hoff W.D. PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation. J. Biol. Chem. 276 (2001) 20821-20823
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 20821-20823
-
-
Lee, B.C.1
Croonquist, P.A.2
Sosnick, T.R.3
Hoff, W.D.4
-
28
-
-
0037065717
-
Light-induced unfolding of photoactive yellow protein mutant M100L
-
Sasaki J., Kumauchi M., Hamada N., Oka T., and Tokunaga F. Light-induced unfolding of photoactive yellow protein mutant M100L. Biochemistry 41 (2002) 1915-1922
-
(2002)
Biochemistry
, vol.41
, pp. 1915-1922
-
-
Sasaki, J.1
Kumauchi, M.2
Hamada, N.3
Oka, T.4
Tokunaga, F.5
-
29
-
-
0344990168
-
Dynamics of protein and chromophore structural changes in the photocycle of photoactive yellow protein monitored by time-resolved optical rotatory dispersion
-
Chen E., Gensch T., Gross A.B., Hendriks J., Hellingwerf K.J., and Kliger D.S. Dynamics of protein and chromophore structural changes in the photocycle of photoactive yellow protein monitored by time-resolved optical rotatory dispersion. Biochemistry 42 (2003) 2062-2071
-
(2003)
Biochemistry
, vol.42
, pp. 2062-2071
-
-
Chen, E.1
Gensch, T.2
Gross, A.B.3
Hendriks, J.4
Hellingwerf, K.J.5
Kliger, D.S.6
-
30
-
-
0345707600
-
Role of an N-terminal loop in the secondary structural change of photoactive yellow protein
-
Harigai M., Imamoto Y., Kamikubo H., Yamazaki Y., and Kataoka M. Role of an N-terminal loop in the secondary structural change of photoactive yellow protein. Biochemistry 42 (2003) 13893-13900
-
(2003)
Biochemistry
, vol.42
, pp. 13893-13900
-
-
Harigai, M.1
Imamoto, Y.2
Kamikubo, H.3
Yamazaki, Y.4
Kataoka, M.5
-
31
-
-
0037137227
-
Light-induced global conformational change of photoactive yellow protein in solution
-
Imamoto Y., Kamikubo H., Harigai M., Shimizu N., and Kataoka M. Light-induced global conformational change of photoactive yellow protein in solution. Biochemistry 41 (2002) 13595-13601
-
(2002)
Biochemistry
, vol.41
, pp. 13595-13601
-
-
Imamoto, Y.1
Kamikubo, H.2
Harigai, M.3
Shimizu, N.4
Kataoka, M.5
-
32
-
-
0036685014
-
Effect of organic anions on the photoreaction of photoactive yellow protein
-
Shimizu N., Kamikubo H., Mihara K., Imamoto Y., and Kataoka M. Effect of organic anions on the photoreaction of photoactive yellow protein. J. Biochem. 132 (2002) 257-263
-
(2002)
J. Biochem.
, vol.132
, pp. 257-263
-
-
Shimizu, N.1
Kamikubo, H.2
Mihara, K.3
Imamoto, Y.4
Kataoka, M.5
-
33
-
-
0037031251
-
Kinetics of proton uptake and dye binding by photoactive yellow protein in wild type and in the E46Q and E46A mutants
-
Borucki B., Devanathan S., Otto H., Cusanovich M.A., Tollin G., and Heyn M.P. Kinetics of proton uptake and dye binding by photoactive yellow protein in wild type and in the E46Q and E46A mutants. Biochemistry 41 (2002) 10026-10037
-
(2002)
Biochemistry
, vol.41
, pp. 10026-10037
-
-
Borucki, B.1
Devanathan, S.2
Otto, H.3
Cusanovich, M.A.4
Tollin, G.5
Heyn, M.P.6
-
34
-
-
0036199841
-
Transient exposure of hydrophobic surface in the photoactive yellow protein monitored with nile red
-
Hendriks J., Gensch T., Hviid L., van der Horst M.A., Hellingwerf K.J., and van Thor J.J. Transient exposure of hydrophobic surface in the photoactive yellow protein monitored with nile red. Biophys. J. 82 (2002) 1632-1643
-
(2002)
Biophys. J.
, vol.82
, pp. 1632-1643
-
-
Hendriks, J.1
Gensch, T.2
Hviid, L.3
van der Horst, M.A.4
Hellingwerf, K.J.5
van Thor, J.J.6
-
35
-
-
6944227839
-
Dynamical transition and proteinquake in photoactive yellow protein
-
Itoh K., and Sasai M. Dynamical transition and proteinquake in photoactive yellow protein. Proc. Natl Acad. Sci. USA 101 (2004) 14736-14741
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 14736-14741
-
-
Itoh, K.1
Sasai, M.2
-
37
-
-
21744460380
-
The solution structure of a transient photoreceptor intermediate: Δ25 photoactive yellow protein
-
Bernard C., Houben K., Derix N.M., Marks D., van der Horst M.A., Hellingwerf K.J., et al. The solution structure of a transient photoreceptor intermediate: Δ25 photoactive yellow protein. Structure 13 (2005) 953-962
-
(2005)
Structure
, vol.13
, pp. 953-962
-
-
Bernard, C.1
Houben, K.2
Derix, N.M.3
Marks, D.4
van der Horst, M.A.5
Hellingwerf, K.J.6
-
38
-
-
2942533032
-
Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein
-
Anderson S., Srajer V., Pahl R., Rajagopal S., Schotte F., Anfinrud P., et al. Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein. Structure 12 (2004) 1039-1045
-
(2004)
Structure
, vol.12
, pp. 1039-1045
-
-
Anderson, S.1
Srajer, V.2
Pahl, R.3
Rajagopal, S.4
Schotte, F.5
Anfinrud, P.6
-
39
-
-
11844294715
-
A structural pathway for signaling in the E46Q mutant of photoactive yellow protein
-
Rajagopal S., Anderson S., Srajer V., Schmidt M., Pahl R., and Moffat K. A structural pathway for signaling in the E46Q mutant of photoactive yellow protein. Structure 13 (2005) 55-63
-
(2005)
Structure
, vol.13
, pp. 55-63
-
-
Rajagopal, S.1
Anderson, S.2
Srajer, V.3
Schmidt, M.4
Pahl, R.5
Moffat, K.6
-
40
-
-
0346850583
-
Lack of negative charge in the E46Q mutant of photoactive yellow protein prevents partial unfolding of the blue-shifted intermediate
-
Derix N.M., Wechselberger R.W., van der Horst M.A., Hellingwerf K.J., Boelens R., Kaptein R., and van Nuland N.A.J. Lack of negative charge in the E46Q mutant of photoactive yellow protein prevents partial unfolding of the blue-shifted intermediate. Biochemistry 42 (2003) 14501-14506
-
(2003)
Biochemistry
, vol.42
, pp. 14501-14506
-
-
Derix, N.M.1
Wechselberger, R.W.2
van der Horst, M.A.3
Hellingwerf, K.J.4
Boelens, R.5
Kaptein, R.6
van Nuland, N.A.J.7
-
41
-
-
0035753065
-
High resolution, high-throughput amide deuterium exchange- mass spectrometry (DXMS) determination of protein binding site structure and dynamics: utility in pharmaceutical design
-
Woods Jr. V.L., and Hamuro Y. High resolution, high-throughput amide deuterium exchange- mass spectrometry (DXMS) determination of protein binding site structure and dynamics: utility in pharmaceutical design. J. Cell. Biochem. 37 (2001) 89-98
-
(2001)
J. Cell. Biochem.
, vol.37
, pp. 89-98
-
-
Woods Jr., V.L.1
Hamuro, Y.2
-
42
-
-
0036965184
-
Domain organization of D-AKAP2 revealed by deuterium exchange-mass spectrometry (DXMS)
-
Hamuro Y., Burns L.L., Canaves J.M., Hoffman R.C., Taylor S.S., and Woods Jr. V.L. Domain organization of D-AKAP2 revealed by deuterium exchange-mass spectrometry (DXMS). J. Mol. Biol. 321 (2002) 703-714
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 703-714
-
-
Hamuro, Y.1
Burns, L.L.2
Canaves, J.M.3
Hoffman, R.C.4
Taylor, S.S.5
Woods Jr., V.L.6
-
43
-
-
0036428762
-
Phosphorylation-driven motions in the COOH-terminal Src kinase, CSK, revealed through enhanced hydrogen-deuterium exchange and mass spectrometry (DXMS)
-
Hamuro Y., Wong L., Shaffer J., Kim J.S., Stranz D.D., Jennings P.A., et al. Phosphorylation-driven motions in the COOH-terminal Src kinase, CSK, revealed through enhanced hydrogen-deuterium exchange and mass spectrometry (DXMS). J. Mol. Biol. 323 (2002) 871-881
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 871-881
-
-
Hamuro, Y.1
Wong, L.2
Shaffer, J.3
Kim, J.S.4
Stranz, D.D.5
Jennings, P.A.6
-
44
-
-
0038810081
-
Protein structure change studied by hydrogen-deuterium exchange, functional labeling, and mass spectrometry
-
Englander J.J., Del Mar C., Li W., Englander S.W., Kim J.S., Stranz D.D., et al. Protein structure change studied by hydrogen-deuterium exchange, functional labeling, and mass spectrometry. Proc. Natl Acad. Sci. USA 100 (2003) 7057-7062
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 7057-7062
-
-
Englander, J.J.1
Del Mar, C.2
Li, W.3
Englander, S.W.4
Kim, J.S.5
Stranz, D.D.6
-
45
-
-
0344405702
-
Dynamics of cAPK type II beta activation revealed by enhanced amide H/2H exchange mass spectrometry (DXMS)
-
Hamuro Y., Zawadzki K.M., Kim J.S., Stranz D.D., Taylor S.S., and Woods Jr. V.L. Dynamics of cAPK type II beta activation revealed by enhanced amide H/2H exchange mass spectrometry (DXMS). J. Mol. Biol. 327 (2003) 1065-1076
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 1065-1076
-
-
Hamuro, Y.1
Zawadzki, K.M.2
Kim, J.S.3
Stranz, D.D.4
Taylor, S.S.5
Woods Jr., V.L.6
-
46
-
-
0042010184
-
Dissecting interdomain communication within cAPK regulatory subunit type IIbeta using enhanced amide hydrogen/deuterium exchange mass spectrometry (DXMS)
-
Zawadzki K.M., Hamuro Y., Kim J.S., Garrod S., Stranz D.D., Taylor S.S., and Woods Jr. V.L. Dissecting interdomain communication within cAPK regulatory subunit type IIbeta using enhanced amide hydrogen/deuterium exchange mass spectrometry (DXMS). Protein. Sci. 12 (2003) 1980-1990
-
(2003)
Protein. Sci.
, vol.12
, pp. 1980-1990
-
-
Zawadzki, K.M.1
Hamuro, Y.2
Kim, J.S.3
Garrod, S.4
Stranz, D.D.5
Taylor, S.S.6
Woods Jr., V.L.7
-
47
-
-
3242884785
-
Structural determinants for generating centromeric chromatin
-
Black B.E., Foltz D.R., Chakravarthy S., Luger K., Woods Jr. V.L., and Cleveland D.W. Structural determinants for generating centromeric chromatin. Nature 430 (2004) 578-582
-
(2004)
Nature
, vol.430
, pp. 578-582
-
-
Black, B.E.1
Foltz, D.R.2
Chakravarthy, S.3
Luger, K.4
Woods Jr., V.L.5
Cleveland, D.W.6
-
48
-
-
1842508816
-
Mapping intersubunit interactions of the regulatory subunit (RIalpha) in the type I holoenzyme of protein kinase A by amide hydrogen/deuterium exchange mass spectrometry (DXMS)
-
Hamuro Y., Anand G.S., Kim J.S., Juliano C., Stranz D.D., Taylor S.S., and Woods Jr. V.L. Mapping intersubunit interactions of the regulatory subunit (RIalpha) in the type I holoenzyme of protein kinase A by amide hydrogen/deuterium exchange mass spectrometry (DXMS). J. Mol. Biol. 340 (2004) 1185-1196
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 1185-1196
-
-
Hamuro, Y.1
Anand, G.S.2
Kim, J.S.3
Juliano, C.4
Stranz, D.D.5
Taylor, S.S.6
Woods Jr., V.L.7
-
49
-
-
1642514905
-
Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS
-
Pantazatos D., Kim J.S., Klock H.E., Stevens R.C., Wilson I.A., Lesley S.A., and Woods Jr. V.L. Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS. Proc. Natl Acad. Sci. USA 101 (2004) 751-756
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 751-756
-
-
Pantazatos, D.1
Kim, J.S.2
Klock, H.E.3
Stevens, R.C.4
Wilson, I.A.5
Lesley, S.A.6
Woods Jr., V.L.7
-
50
-
-
4143118969
-
Dynamic coupling between the SH2 domain and active site of the COOH terminal Src kinase, Csk
-
Wong L., Lieser S., Chie-Leon B., Miyashita O., Aubol B., Shaffer J., et al. Dynamic coupling between the SH2 domain and active site of the COOH terminal Src kinase, Csk. J. Mol. Biol. 341 (2004) 93-106
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 93-106
-
-
Wong, L.1
Lieser, S.2
Chie-Leon, B.3
Miyashita, O.4
Aubol, B.5
Shaffer, J.6
-
51
-
-
28844504497
-
Distinct interaction modes of an AKAP bound to two regulatory subunit isoforms of protein kinase A revealed by amide hydrogen/deuterium exchange
-
Burns-Hamuro L.L., Hamuro Y., Kim J.S., Sigala P., Fayos R., and Stranz Jr. D.D. Distinct interaction modes of an AKAP bound to two regulatory subunit isoforms of protein kinase A revealed by amide hydrogen/deuterium exchange. Protein Sci. 14 (2005) 2982-2992
-
(2005)
Protein Sci.
, vol.14
, pp. 2982-2992
-
-
Burns-Hamuro, L.L.1
Hamuro, Y.2
Kim, J.S.3
Sigala, P.4
Fayos, R.5
Stranz Jr., D.D.6
-
52
-
-
27344436619
-
Structure and properties of {alpha}-synuclein and other amyloids determined at the amino acid level
-
Del Mar C., Greenbaum E.A., Mayne L., Englander S.W., and Woods Jr. V.L. Structure and properties of {alpha}-synuclein and other amyloids determined at the amino acid level. Proc. Natl Acad. Sci. USA 102 (2005) 15477-15482
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 15477-15482
-
-
Del Mar, C.1
Greenbaum, E.A.2
Mayne, L.3
Englander, S.W.4
Woods Jr., V.L.5
-
53
-
-
15744389578
-
Molecular interactions between matrilysin and the matrix metalloproteinase inhibitor doxycycline investigated by deuterium exchange mass spectrometry
-
Garcia R.A., Pantazatos D.P., Gessner C.R., Go K.V., Woods Jr. V.L., and Villarreal F.J. Molecular interactions between matrilysin and the matrix metalloproteinase inhibitor doxycycline investigated by deuterium exchange mass spectrometry. Mol. Pharmacol. 67 (2005) 1128-1136
-
(2005)
Mol. Pharmacol.
, vol.67
, pp. 1128-1136
-
-
Garcia, R.A.1
Pantazatos, D.P.2
Gessner, C.R.3
Go, K.V.4
Woods Jr., V.L.5
Villarreal, F.J.6
-
54
-
-
22044451713
-
Coupled motions in the SH2 and kinase domains of Csk control Src phosphorylation
-
Wong L., Lieser S.A., Miyashita O., Miller M., Tasken K., Onuchic J.N., et al. Coupled motions in the SH2 and kinase domains of Csk control Src phosphorylation. J. Mol. Biol. 351 (2005) 131-143
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 131-143
-
-
Wong, L.1
Lieser, S.A.2
Miyashita, O.3
Miller, M.4
Tasken, K.5
Onuchic, J.N.6
-
55
-
-
12344334691
-
Allosteric network of cAMP-dependent protein kinase revealed by mutation of Tyr204 in the P+1 loop
-
Yang J., Garrod S.M., Deal M.S., Anand G.S., Woods Jr. V.L., and Taylor S. Allosteric network of cAMP-dependent protein kinase revealed by mutation of Tyr204 in the P+1 loop. J. Mol. Biol. 346 (2005) 191-201
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 191-201
-
-
Yang, J.1
Garrod, S.M.2
Deal, M.S.3
Anand, G.S.4
Woods Jr., V.L.5
Taylor, S.6
-
56
-
-
0035814881
-
Light induces destabilization of photoactive yellow protein
-
Ohishi S., Shimizu N., Mihara K., Imamoto Y., and Kataoka M. Light induces destabilization of photoactive yellow protein. Biochemistry 40 (2001) 2854-2859
-
(2001)
Biochemistry
, vol.40
, pp. 2854-2859
-
-
Ohishi, S.1
Shimizu, N.2
Mihara, K.3
Imamoto, Y.4
Kataoka, M.5
-
58
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of alpha helices
-
Richardson J.S., and Richardson D.C. Amino acid preferences for specific locations at the ends of alpha helices. Science 240 (1988) 1648-1652
-
(1988)
Science
, vol.240
, pp. 1648-1652
-
-
Richardson, J.S.1
Richardson, D.C.2
-
59
-
-
3242791807
-
Tryptophan fluorescence monitors structural changes accompanying signalling state formation in the photocycle of photoactive yellow protein
-
Gensch T., Hendriks J., and Hellingwerf K.J. Tryptophan fluorescence monitors structural changes accompanying signalling state formation in the photocycle of photoactive yellow protein. Photochem. Photobiol. Sci. 3 (2004) 531-536
-
(2004)
Photochem. Photobiol. Sci.
, vol.3
, pp. 531-536
-
-
Gensch, T.1
Hendriks, J.2
Hellingwerf, K.J.3
-
60
-
-
29344435548
-
Time-resolved single tryptophan fluorescence in photoactive yellow protein monitors changes in the chromophore structure during the photocycle via energy transfer
-
Otto H., Hoersch D., Meyer T.E., Cusanovich M.A., and Heyn M.P. Time-resolved single tryptophan fluorescence in photoactive yellow protein monitors changes in the chromophore structure during the photocycle via energy transfer. Biochemistry 44 (2005) 16804-16816
-
(2005)
Biochemistry
, vol.44
, pp. 16804-16816
-
-
Otto, H.1
Hoersch, D.2
Meyer, T.E.3
Cusanovich, M.A.4
Heyn, M.P.5
-
61
-
-
0034911722
-
Amino acids in the N-terminal region regulate the photocycle of photoactive yellow protein
-
Harigai M., Yasuda S., Imamoto Y., Yoshihara F., Tokunaga F., and Kataoka M. Amino acids in the N-terminal region regulate the photocycle of photoactive yellow protein. J. Biochem. 130 (2001) 51-56
-
(2001)
J. Biochem.
, vol.130
, pp. 51-56
-
-
Harigai, M.1
Yasuda, S.2
Imamoto, Y.3
Yoshihara, F.4
Tokunaga, F.5
Kataoka, M.6
-
62
-
-
0035906913
-
The role of the N-terminal domain of photoactive yellow protein in the transient partial unfolding during signaling state formation
-
van der Horst M.A., van Stokkum I.H., Crielaard W., and Hellingwerf K.J. The role of the N-terminal domain of photoactive yellow protein in the transient partial unfolding during signaling state formation. FEBS Letters 497 (2001) 26-30
-
(2001)
FEBS Letters
, vol.497
, pp. 26-30
-
-
van der Horst, M.A.1
van Stokkum, I.H.2
Crielaard, W.3
Hellingwerf, K.J.4
-
63
-
-
78651189765
-
On the nature of allosteric transitions: a plausible model
-
Monod J., Wyman J., and Changeux J.P. On the nature of allosteric transitions: a plausible model. J. Mol. Biol. 12 (1965) 88-118
-
(1965)
J. Mol. Biol.
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.P.3
-
64
-
-
0346220393
-
The role of dynamics in allosteric regulation
-
Kern D., and Zuiderweg E.R. The role of dynamics in allosteric regulation. Curr. Opin. Struct. Biol. 13 (2003) 748-757
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 748-757
-
-
Kern, D.1
Zuiderweg, E.R.2
-
65
-
-
20344370764
-
Allosteric mechanisms of signal transduction
-
Changeux J.-P., and Edelstein S.J. Allosteric mechanisms of signal transduction. Science 308 (2005) 1424-1428
-
(2005)
Science
, vol.308
, pp. 1424-1428
-
-
Changeux, J.-P.1
Edelstein, S.J.2
-
66
-
-
0037452676
-
Crystal structure of a photoactive yellow protein from a sensor histidine kinase: conformational variability and signal transduction
-
Rajagopal S., and Moffat K. Crystal structure of a photoactive yellow protein from a sensor histidine kinase: conformational variability and signal transduction. Proc. Natl Acad. Sci. USA 100 (2003) 1649-1654
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 1649-1654
-
-
Rajagopal, S.1
Moffat, K.2
-
67
-
-
0033575370
-
Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes
-
Jiang Z.Y., Swem L.R., Rushing B.G., Devanathan S., Tollin G., and Bauer C.E. Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes. Science 285 (1999) 406-409
-
(1999)
Science
, vol.285
, pp. 406-409
-
-
Jiang, Z.Y.1
Swem, L.R.2
Rushing, B.G.3
Devanathan, S.4
Tollin, G.5
Bauer, C.E.6
-
68
-
-
19944426818
-
Crystal structure and interactions of the PAS repeat region of the Drosophila clock protein PERIOD
-
Yildiz O., Doi M., Yujnovsky I., Cardone L., Bernt A., Hennig S., et al. Crystal structure and interactions of the PAS repeat region of the Drosophila clock protein PERIOD. Mol. Cell 17 (2005) 69-82
-
(2005)
Mol. Cell
, vol.17
, pp. 69-82
-
-
Yildiz, O.1
Doi, M.2
Yujnovsky, I.3
Cardone, L.4
Bernt, A.5
Hennig, S.6
-
69
-
-
0037435618
-
The LOV domain family: photoresponsive signaling modules coupled to diverse output domains
-
Crosson S., Rajagopal S., and Moffat K. The LOV domain family: photoresponsive signaling modules coupled to diverse output domains. Biochemistry 42 (2003) 2-10
-
(2003)
Biochemistry
, vol.42
, pp. 2-10
-
-
Crosson, S.1
Rajagopal, S.2
Moffat, K.3
-
70
-
-
0141707094
-
Structural basis of a phototropin light switch
-
Harper S.M., Neil L.C., and Gardner K.H. Structural basis of a phototropin light switch. Science 301 (2003) 1541-1544
-
(2003)
Science
, vol.301
, pp. 1541-1544
-
-
Harper, S.M.1
Neil, L.C.2
Gardner, K.H.3
-
71
-
-
0346734132
-
Structural basis for PAS domain heterodimerization in the basic helix-loop-helix transcription factor hypoxia-inducible factor
-
Erbel P.J., Card P.B., Karakuzu O., Bruick R.K., and Gardner K.H. Structural basis for PAS domain heterodimerization in the basic helix-loop-helix transcription factor hypoxia-inducible factor. Proc. Natl Acad. Sci. USA 100 (2003) 15504-15509
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15504-15509
-
-
Erbel, P.J.1
Card, P.B.2
Karakuzu, O.3
Bruick, R.K.4
Gardner, K.H.5
-
72
-
-
0031021311
-
Active site mutants implicate key residues for control of color and light cycle kinetics of photoactive yellow protein
-
Genick U.K., Devanathan S., Meyer T.E., Canestrelli I.L., Williams E., Cusanovich M.A., et al. Active site mutants implicate key residues for control of color and light cycle kinetics of photoactive yellow protein. Biochemistry 36 (1997) 8-14
-
(1997)
Biochemistry
, vol.36
, pp. 8-14
-
-
Genick, U.K.1
Devanathan, S.2
Meyer, T.E.3
Canestrelli, I.L.4
Williams, E.5
Cusanovich, M.A.6
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