-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
2
-
-
84874645928
-
-
Current annotated genomes in GO web site
-
Current annotated genomes in GO web site [http://www.geneontology. org/ GO.current.annotations.shtml]
-
-
-
-
3
-
-
84874666716
-
-
SGD
-
SGD [http://www.yeastgenome.org/]
-
-
-
-
4
-
-
84874653041
-
-
FlyBase
-
FlyBase [http://www.fruitfly.org/]
-
-
-
-
5
-
-
84874659934
-
-
WormBase
-
WormBase [http://www.wormbase.org/]
-
-
-
-
6
-
-
84874645739
-
-
MGI
-
MGI [http://www.informatics.jax.org/]
-
-
-
-
7
-
-
84874658051
-
-
TAIR
-
TAIR [http://www.arabidopsis.org/]
-
-
-
-
8
-
-
84874661811
-
-
AMIGO
-
AMIGO [http://www.godatabase.org]
-
-
-
-
9
-
-
84874661279
-
-
GOA [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/]
-
GOA [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/]
-
-
-
-
10
-
-
9144232912
-
UniProt: The Universal Protein knowledgebase
-
32 Database issue
-
Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS: UniProt: the Universal Protein knowledgebase. Nucleic Acids Res 2004, 32 Database issue:D115-9.
-
(2004)
Nucleic Acids Res
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
11
-
-
9144252016
-
The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with Gene Ontology
-
32 Database issue
-
Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R: The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res 2004, 32 Database issue:D262-6.
-
(2004)
Nucleic Acids Res
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Lee, V.4
Dimmer, E.5
Maslen, J.6
Binns, D.7
Harte, N.8
Lopez, R.9
Apweiler, R.10
-
12
-
-
84874645348
-
-
InterPro
-
InterPro [http://www.ebi.ac.uk/interpro]
-
-
-
-
13
-
-
0037251964
-
The InterPro Database, 2003 brings increased coverage and new features
-
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res 2003, 31:315-318.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 315-318
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Barrell, D.5
Bateman, A.6
Binns, D.7
Biswas, M.8
Bradley, P.9
Bork, P.10
Bucher, P.11
Copley, R.R.12
Courcelle, E.13
Das, U.14
Durbin, R.15
Falquet, L.16
Fleischmann, W.17
Griffiths-Jones, S.18
Haft, D.19
Harte, N.20
Hulo, N.21
Kahn, D.22
Kanapin, A.23
Krestyaninova, M.24
Lopez, R.25
Letunic, I.26
Lonsdale, D.27
Silventoinen, V.28
Orchard, S.E.29
Pagni, M.30
Peyruc, D.31
Ponting, C.P.32
Selengut, J.D.33
Servant, F.34
Sigrist, C.J.35
Vaughan, R.36
Zdobnov, E.M.37
more..
-
14
-
-
0348143187
-
GoFigure: Automated Gene Ontology annotation
-
Khan S, Situ G, Decker K, Schmidt CJ: GoFigure: automated Gene Ontology annotation. Bioinformatics 2003, 19:2484-2485.
-
(2003)
Bioinformatics
, vol.19
, pp. 2484-2485
-
-
Khan, S.1
Situ, G.2
Decker, K.3
Schmidt, C.J.4
-
15
-
-
3242892059
-
GOblet: A platform for Gene Ontology annotation of anonymous sequence data
-
Groth D, Lehrach H, Hennig S: GOblet: a platform for Gene Ontology annotation of anonymous sequence data. Nucleic Acids Res 2004, 32:W313-7.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Groth, D.1
Lehrach, H.2
Hennig, S.3
-
16
-
-
0043122923
-
OntoBlast function: From sequence similarities directly to potential functional annotations by ontology terms
-
Zehetner G: OntoBlast function: From sequence similarities directly to potential functional annotations by ontology terms. Nucleic Acids Res 2003, 31:3799-3803.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3799-3803
-
-
Zehetner, G.1
-
17
-
-
13244268370
-
GOtcha: A new method for prediction of protein function assessed by the annotation of seven genomes
-
Martin DM, Berriman M, Barton GJ: GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinformatics 2004, 5:178.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 178
-
-
Martin, D.M.1
Berriman, M.2
Barton, G.J.3
-
18
-
-
24644503098
-
Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M: Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
19
-
-
0034800374
-
InterProScan - An integration platform for the signature-recognition methods in InterPro
-
Zdobnov EM, Apweiler R: InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001, 17:847-848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
20
-
-
15944404663
-
Gotrees: Predicting go associations from protein domain composition using decision trees
-
Hayete B, Bienkowska JR: Gotrees: predicting go associations from protein domain composition using decision trees. Pac Symp Biocomput 2005: 127-138.
-
(2005)
Pac Symp Biocomput
, pp. 127-138
-
-
Hayete, B.1
Bienkowska, J.R.2
-
21
-
-
10744232966
-
The sequence and analysis of Trypanosoma brucei chromosome II
-
El-Sayed NM, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S, Tweedie A, Biteau N, Khalak HG, Lin X, Mason T, Hannick L, Caler E, Blandin G, Bartholomeu D, Simpson AJ, Kaul S, Zhao H, Pai G, Van Aken S, Utterback T, Haas B, Koo HL, Umayam L, Suh B, Gerrard C, Leech V, Qi R, Zhou S, Schwartz D, Feldblyum T, Salzberg S, Tait A, Turner CM, Ullu E, White O, Melville S, Adams MD, Fraser CM, Donelson JE: The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic Acids Res 2003, 31:4856-4863.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4856-4863
-
-
El-Sayed, N.M.1
Ghedin, E.2
Song, J.3
MacLeod, A.4
Bringaud, F.5
Larkin, C.6
Wanless, D.7
Peterson, J.8
Hou, L.9
Taylor, S.10
Tweedie, A.11
Biteau, N.12
Khalak, H.G.13
Lin, X.14
Mason, T.15
Hannick, L.16
Caler, E.17
Blandin, G.18
Bartholomeu, D.19
Simpson, A.J.20
Kaul, S.21
Zhao, H.22
Pai, G.23
Van Aken, S.24
Utterback, T.25
Haas, B.26
Koo, H.L.27
Umayam, L.28
Suh, B.29
Gerrard, C.30
Leech, V.31
Qi, R.32
Zhou, S.33
Schwartz, D.34
Feldblyum, T.35
Salzberg, S.36
Tait, A.37
Turner, C.M.38
Ullu, E.39
White, O.40
Melville, S.41
Adams, M.D.42
Fraser, C.M.43
Donelson, J.E.44
more..
-
22
-
-
0041335630
-
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
-
Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Daugherty S, Brinkac L, Beanan MJ, Haft DH, Nelson WC, Davidsen T, Zafar N, Zhou L, Liu J, Yuan Q, Khouri H, Fedorova N, Tran B, Russell D, Berry K, Utterback T, Van Aken SE, Feldblyum TV, D'Ascenzo M, Deng WL, Ramos AR, Alfano JR, Cartinhour S, Chatterjee AK, Delaney TP, Lazarowitz SG, Martin GB, Schneider DJ, Tang X, Bender CL, White O, Fraser CM, Collmer A: The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc Natl Acad Sci U S A 2003, 100:10181-10186.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 10181-10186
-
-
Buell, C.R.1
Joardar, V.2
Lindeberg, M.3
Selengut, J.4
Paulsen, I.T.5
Gwinn, M.L.6
Dodson, R.J.7
Deboy, R.T.8
Durkin, A.S.9
Kolonay, J.F.10
Madupu, R.11
Daugherty, S.12
Brinkac, L.13
Beanan, M.J.14
Haft, D.H.15
Nelson, W.C.16
Davidsen, T.17
Zafar, N.18
Zhou, L.19
Liu, J.20
Yuan, Q.21
Khouri, H.22
Fedorova, N.23
Tran, B.24
Russell, D.25
Berry, K.26
Utterback, T.27
Van Aken, S.E.28
Feldblyum, T.V.29
D'Ascenzo, M.30
Deng, W.L.31
Ramos, A.R.32
Alfano, J.R.33
Cartinhour, S.34
Chatterjee, A.K.35
Delaney, T.P.36
Lazarowitz, S.G.37
Martin, G.B.38
Schneider, D.J.39
Tang, X.40
Bender, C.L.41
White, O.42
Fraser, C.M.43
Collmer, A.44
more..
-
23
-
-
0141905891
-
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
-
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RKJ, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O: Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids Res 2003, 31:5654-5666.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5654-5666
-
-
Haas, B.J.1
Delcher, A.L.2
Mount, S.M.3
Wortman, J.R.4
Smith, R.K.J.5
Hannick, L.I.6
Maiti, R.7
Ronning, C.M.8
Rusch, D.B.9
Town, C.D.10
Salzberg, S.L.11
White, O.12
-
24
-
-
0038797803
-
Annotation of the Arabidopsis genome
-
Wortman JR, Haas BJ, Hannick LI, Smith RKJ, Maiti R, Ronning CM, Chan AP, Yu C, Ayele M, Whitelaw CA, White OR, Town CD: Annotation of the Arabidopsis genome. Plant Physiol 2003, 132:461-468.
-
(2003)
Plant Physiol
, vol.132
, pp. 461-468
-
-
Wortman, J.R.1
Haas, B.J.2
Hannick, L.I.3
Smith, R.K.J.4
Maiti, R.5
Ronning, C.M.6
Chan, A.P.7
Yu, C.8
Ayele, M.9
Whitelaw, C.A.10
White, O.R.11
Town, C.D.12
-
25
-
-
29144490099
-
Automated methods of predicting the function of biological sequences using GO and BLAST
-
Jones CE, Baumann U, Brown AL: Automated methods of predicting the function of biological sequences using GO and BLAST. BMC Bioinformatics 2005, 6:272.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 272
-
-
Jones, C.E.1
Baumann, U.2
Brown, A.L.3
-
26
-
-
1542563409
-
Initial sequencing comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigo R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, et al.: Initial sequencing and comparative analysis of the mouse genome. Nature 2002, 420:520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal P. Agarwala, R.6
Ainscough, R.7
Alexandersson, M.8
An, P.9
Antonarakis, S.E.10
Attwood, J.11
Baertsch, R.12
Bailey, J.13
Barlow, K.14
Beck, S.15
Berry, E.16
Birren, B.17
Bloom, T.18
Bork, P.19
Botcherby, M.20
Bray, N.21
Brent, M.R.22
Brown, D.G.23
Brown, S.D.24
Bult, C.25
Burton, J.26
Butler, J.27
Campbell, R.D.28
Carninci, P.29
Cawley, S.30
Chiaromonte, F.31
Chinwalla, A.T.32
Church, D.M.33
Clamp, M.34
Clee, C.35
Collins, F.S.36
Cook, L.L.37
Copley, R.R.38
Coulson, A.39
Couronne, O.40
Cuff, J.41
Curwen, V.42
Cutts, T.43
Daly, M.44
David, R.45
Davies, J.46
Delehaunty, K.D.47
Deri, J.48
Dermitzakis, E.T.49
Dewey, C.50
Dickens, N.J.51
Diekhans, M.52
Dodge, S.53
Dubchak, I.54
Dunn, D.M.55
Eddy, S.R.56
Elnitski, L.57
Emes, R.D.58
Eswara, P.59
Eyras, E.60
Felsenfeld, A.61
Fewell, G.A.62
Flicek, P.63
Foley, K.64
Frankel, W.N.65
Fulton, L.A.66
Fulton, R.S.67
Furey, T.S.68
Gage, D.69
Gibbs, R.A.70
Glusman, G.71
Gnerre, S.72
Goldman, N.73
Goodstadt, L.74
Grafham, D.75
Graves, T.A.76
Green, E.D.77
Gregory, S.78
Guigo, R.79
Guyer, M.80
Hardison, R.C.81
Haussler, D.82
Hayashizaki, Y.83
Hillier, L.W.84
Hinrichs, A.85
Hlavina, W.86
Holzer, T.87
Hsu, F.88
Hua, A.89
Hubbard, T.90
Hunt, A.91
Jackson, I.92
Jaffe, D.B.93
Johnson, L.S.94
Jones, M.95
Jones, T.A.96
Joy, A.97
Kamal, M.98
more..
-
27
-
-
84874663811
-
-
GOslim
-
GOslim [http://geneontology.org/GO.slims.shtml]
-
-
-
-
28
-
-
9444261296
-
Analysis and functional classification of transcripts from the nematode Meloidogyne incognita
-
McCarter JP, Mitreva MD, Martin J, Dante M, Wylie T, Rao U, Pape D, Bowers Y, Theising B, Murphy CV, Kloek AP, Chiapelli BJ, Clifton SW, Bird DM, Waterston RH: Analysis and functional classification of transcripts from the nematode Meloidogyne incognita. Genome Biol 2003, 4:R26.
-
(2003)
Genome Biol
, vol.4
-
-
McCarter, J.P.1
Mitreva, M.D.2
Martin, J.3
Dante, M.4
Wylie, T.5
Rao, U.6
Pape, D.7
Bowers, Y.8
Theising, B.9
Murphy, C.V.10
Kloek, A.P.11
Chiapelli, B.J.12
Clifton, S.W.13
Bird, D.M.14
Waterston, R.H.15
-
29
-
-
10744220169
-
Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans
-
Mitreva M, McCarter JP, Martin J, Dante M, Wylie T, Chiapelli B, Pape D, Clifton SW, Nutman TB, Waterston RH: Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans. Genome Res 2004, 14:209-220.
-
(2004)
Genome Res
, vol.14
, pp. 209-220
-
-
Mitreva, M.1
McCarter, J.P.2
Martin, J.3
Dante, M.4
Wylie, T.5
Chiapelli, B.6
Pape, D.7
Clifton, S.W.8
Nutman, T.B.9
Waterston, R.H.10
-
30
-
-
4243088097
-
The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics
-
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, Griffiths-Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullikin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stalich JE, Wei C, Willey D, Wilson RK, Durbin R, Waterston RH: The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol 2003, 1:E45.
-
(2003)
PLoS Biol
, vol.1
-
-
Stein, L.D.1
Bao, Z.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
Chen, N.6
Chinwalla, A.7
Clarke, L.8
Clee, C.9
Coghlan, A.10
Coulson, A.11
D'Eustachio, P.12
Fitch, D.H.13
Fulton, L.A.14
Fulton, R.E.15
Griffiths-Jones, S.16
Harris, T.W.17
Hillier, L.W.18
Kamath, R.19
Kuwabara, P.E.20
Mardis, E.R.21
Marra, M.A.22
Miner, T.L.23
Minx, P.24
Mullikin, J.C.25
Plumb, R.W.26
Rogers, J.27
Schein, J.E.28
Sohrmann, M.29
Spieth, J.30
Stalich, J.E.31
Wei, C.32
Willey, D.33
Wilson, R.K.34
Durbin, R.35
Waterston, R.H.36
more..
-
31
-
-
0035704901
-
Profiling gene expression using onto-express
-
Khatri P, Draghici S, Ostermeier GC, Krawetz SA: Profiling gene expression using onto-express. Genomics 2002, 79:266-270.
-
(2002)
Genomics
, vol.79
, pp. 266-270
-
-
Khatri, P.1
Draghici, S.2
Ostermeier, G.C.3
Krawetz, S.A.4
-
32
-
-
1542399989
-
FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes
-
Al-Shahrour F, Diaz-Uriarte R, Dopazo J: FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics 2004, 20:578-580.
-
(2004)
Bioinformatics
, vol.20
, pp. 578-580
-
-
Al-Shahrour, F.1
Diaz-Uriarte, R.2
Dopazo, J.3
-
33
-
-
24644470505
-
Ontological analysis of gene expression data: Current tools, limitations, and open problems
-
Khatri P, Draghici S: Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics 2005, 21:3587-3595.
-
(2005)
Bioinformatics
, vol.21
, pp. 3587-3595
-
-
Khatri, P.1
Draghici, S.2
-
34
-
-
1942440433
-
The evolutionary development of the protein complement of photosystem 2
-
Raymond J, Blankenship RE: The evolutionary development of the protein complement of photosystem 2. Biochim Biophys Acta 2004, 1655:133-139.
-
(2004)
Biochim Biophys Acta
, vol.1655
, pp. 133-139
-
-
Raymond, J.1
Blankenship, R.E.2
-
37
-
-
0037388041
-
Nitrogen fixation and photosynthetic oxygen evolution in cyanobacteria
-
Berman-Frank I, Lundgren P, Falkowski P: Nitrogen fixation and photosynthetic oxygen evolution in cyanobacteria. Res Microbiol 2003, 154:157-164.
-
(2003)
Res Microbiol
, vol.154
, pp. 157-164
-
-
Berman-Frank, I.1
Lundgren, P.2
Falkowski, P.3
-
38
-
-
0033485273
-
Endosymbiosis and evolution of the plant cell
-
McFadden GI: Endosymbiosis and evolution of the plant cell. Curr Opin Plant Biol 1999, 2:513-519.
-
(1999)
Curr Opin Plant Biol
, vol.2
, pp. 513-519
-
-
McFadden, G.I.1
-
39
-
-
0034544458
-
Cyanobacterial-bacterial mat consortia: Examining the functional unit of microbial survival and growth in extreme environments
-
Paerl HW, Pinckney JL, Steppe TF: Cyanobacterial-bacterial mat consortia: examining the functional unit of microbial survival and growth in extreme environments. Environ Microbiol 2000, 2:11-26.
-
(2000)
Environ Microbiol
, vol.2
, pp. 11-26
-
-
Paerl, H.W.1
Pinckney, J.L.2
Steppe, T.F.3
-
40
-
-
14644411763
-
Photosynthetic microbes in freezing deserts
-
Thomas DN: Photosynthetic microbes in freezing deserts. Trends Microbiol 2005, 13:87-88.
-
(2005)
Trends Microbiol
, vol.13
, pp. 87-88
-
-
Thomas, D.N.1
-
42
-
-
0030606607
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
-
Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y, Miyajima N, Hirosawa M, Sugiura M, Sasamoto S, Kimura T, Hosouchi T, Matsuno A, Muraki A, Nakazaki N, Naruo K, Okumura S, Shimpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res 1996, 3:109-136.
-
(1996)
DNA Res
, vol.3
, pp. 109-136
-
-
Kaneko, T.1
Sato, S.2
Kotani, H.3
Tanaka, A.4
Asamizu, E.5
Nakamura, Y.6
Miyajima, N.7
Hirosawa, M.8
Sugiura, M.9
Sasamoto, S.10
Kimura, T.11
Hosouchi, T.12
Matsuno, A.13
Muraki, A.14
Nakazaki, N.15
Naruo, K.16
Okumura, S.17
Shimpo, S.18
Takeuchi, C.19
Wada, T.20
Watanabe, A.21
Yamada, M.22
Yasuda, M.23
Tabata, S.24
more..
-
43
-
-
0035980822
-
Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120
-
205-13
-
Kaneko T, Nakamura Y, Wolk CP, Kuritz T, Sasamoto S, Watanabe A, Iriguchi M, Ishikawa A, Kawashima K, Kimura T, Kishida Y, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakazaki N, Shimpo S, Sugimoto M, Takazawa M, Yamada M, Yasuda M, Tabata S: Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res 2001, 8:205-13; 227-53.
-
(2001)
DNA Res
, vol.8
, pp. 227-253
-
-
Kaneko, T.1
Nakamura, Y.2
Wolk, C.P.3
Kuritz, T.4
Sasamoto, S.5
Watanabe, A.6
Iriguchi, M.7
Ishikawa, A.8
Kawashima, K.9
Kimura, T.10
Kishida, Y.11
Kohara, M.12
Matsumoto, M.13
Matsuno, A.14
Muraki, A.15
Nakazaki, N.16
Shimpo, S.17
Sugimoto, M.18
Takazawa, M.19
Yamada, M.20
Yasuda, M.21
Tabata, S.22
more..
-
44
-
-
0032529472
-
Survey, analysis and genetic organization of genes encoding eukaryotic-like signaling proteins on a cyanobacterial genome
-
Zhang CC, Gonzalez L, Phalip V: Survey, analysis and genetic organization of genes encoding eukaryotic-like signaling proteins on a cyanobacterial genome. Nucleic Acids Res 1998, 26:3619-3625.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3619-3625
-
-
Zhang, C.C.1
Gonzalez, L.2
Phalip, V.3
-
45
-
-
0042697730
-
From genome to enzyme: Analysis of key glycolytic and oxidative pentose-phosphate pathway enzymes in the cyanobacterium Synechocystis sp. PCC 6803
-
Knowles VL, Plaxton WC: From genome to enzyme: analysis of key glycolytic and oxidative pentose-phosphate pathway enzymes in the cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol 2003, 44:758-763.
-
(2003)
Plant Cell Physiol
, vol.44
, pp. 758-763
-
-
Knowles, V.L.1
Plaxton, W.C.2
-
46
-
-
0031735058
-
Lessons from Sequencing of the Genome of a Unicellular Cyanobacterium, Synechocystis Sp. Pcc6803
-
Kotani H, Tabata S: Lessons from Sequencing of the Genome of a Unicellular Cyanobacterium, Synechocystis Sp. Pcc6803. Annu Rev Plant Physiol Plant Mol Biol 1998, 49:151-171.
-
(1998)
Annu Rev Plant Physiol Plant Mol Biol
, vol.49
, pp. 151-171
-
-
Kotani, H.1
Tabata, S.2
-
47
-
-
0036198693
-
Hydrogenases and hydrogen metabolism of cyanobacteria
-
table of contents
-
Tamagnini P, Axelsson R, Lindberg P, Oxelfelt F, Wunschiers R, Lindblad P: Hydrogenases and hydrogen metabolism of cyanobacteria. Microbiol Mol Biol Rev 2002, 66:1-20, table of contents.
-
(2002)
Microbiol Mol Biol Rev
, vol.66
, pp. 1-20
-
-
Tamagnini, P.1
Axelsson, R.2
Lindberg, P.3
Oxelfelt, F.4
Wunschiers, R.5
Lindblad, P.6
-
48
-
-
0037044474
-
Analysis of the hli gene family in marine and freshwater cyanobacteria
-
Bhaya D, Dufresne A, Vaulot D, Grossman A: Analysis of the hli gene family in marine and freshwater cyanobacteria. FEMS Microbiol Lett 2002, 215:209-219.
-
(2002)
FEMS Microbiol Lett
, vol.215
, pp. 209-219
-
-
Bhaya, D.1
Dufresne, A.2
Vaulot, D.3
Grossman, A.4
-
49
-
-
25144464549
-
Comparative genomics analysis of NtcA regulons in cyanobacteria: Regulation of nitrogen assimilation and its coupling to photosynthesis
-
Su Z, Olman V, Mao F, Xu Y: Comparative genomics analysis of NtcA regulons in cyanobacteria: regulation of nitrogen assimilation and its coupling to photosynthesis. Nucleic Acids Res 2005, 33:5156-5171.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5156-5171
-
-
Su, Z.1
Olman, V.2
Mao, F.3
Xu, Y.4
-
50
-
-
0038043254
-
Cyanobacterial signature genes
-
Martin KA, Siefert JL, Yerrapragada S, Lu Y, McNeill TZ, Moreno PA, Weinstock GM, Widger WR, Fox GE: Cyanobacterial signature genes. Photosynth Res 2003, 75:211-221.
-
(2003)
Photosynth Res
, vol.75
, pp. 211-221
-
-
Martin, K.A.1
Siefert, J.L.2
Yerrapragada, S.3
Lu, Y.4
McNeill, T.Z.5
Moreno, P.A.6
Weinstock, G.M.7
Widger, W.R.8
Fox, G.E.9
-
51
-
-
0034352940
-
POWER_SAGE: Comparing statistical tests for SAGE experiments
-
Man MZ, Wang X, Wang Y: POWER_SAGE: comparing statistical tests for SAGE experiments. Bioinformatics 2000, 16:953-959.
-
(2000)
Bioinformatics
, vol.16
, pp. 953-959
-
-
Man, M.Z.1
Wang, X.2
Wang, Y.3
-
52
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini YYH: Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Statist Soc B 1995, 57:289-300.
-
(1995)
J Roy Statist Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.Y.H.1
-
53
-
-
0035369115
-
Histidine kinases and response regulator proteins in two-component signaling systems
-
West AH, Stock AM: Histidine kinases and response regulator proteins in two-component signaling systems. Trends Biochem Sci 2001, 26:369-376.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 369-376
-
-
West, A.H.1
Stock, A.M.2
-
54
-
-
0035026466
-
The molecular puzzle of two-component signaling cascades
-
Foussard M, Cabantous S, Pedelacq J, Guillet V, Tranier S, Mourey L, Birck C, Samama J: The molecular puzzle of two-component signaling cascades. Microbes Infect 2001, 3:417-424.
-
(2001)
Microbes Infect
, vol.3
, pp. 417-424
-
-
Foussard, M.1
Cabantous, S.2
Pedelacq, J.3
Guillet, V.4
Tranier, S.5
Mourey, L.6
Birck, C.7
Samama, J.8
-
55
-
-
0036400593
-
Histidine protein kinases: Key signal transducers outside the animal kingdom
-
REVIEWS3013
-
Wolanin PM, Thomason PA, Stock JB: Histidine protein kinases: key signal transducers outside the animal kingdom. Genome Biol 2002, 3:REVIEWS3013.
-
(2002)
Genome Biol
, vol.3
-
-
Wolanin, P.M.1
Thomason, P.A.2
Stock, J.B.3
-
56
-
-
0041620215
-
Automated Gene Ontology annotation for anonymous sequence data
-
Hennig S, Groth D, Lehrach H: Automated Gene Ontology annotation for anonymous sequence data. Nucleic Acids Res 2003, 31:3712-3715.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3712-3715
-
-
Hennig, S.1
Groth, D.2
Lehrach, H.3
-
57
-
-
33746664765
-
Can sequence determine function?
-
REVIEWS0005
-
Gerlt JA, Babbitt PC: Can sequence determine function? Genome Biol 2000, 1:REVIEWS0005.
-
(2000)
Genome Biol
, vol.1
-
-
Gerlt, J.A.1
Babbitt, P.C.2
-
58
-
-
0032568596
-
Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
-
Brenner SE, Chothia C, Hubbard TJ: Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships. Proc Natl Acad Sci U S A 1998, 95:6073-6078.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 6073-6078
-
-
Brenner, S.E.1
Chothia, C.2
Hubbard, T.J.3
-
59
-
-
84860501618
-
A procedure for assessing GO annotation consistency
-
Dolan ME, Ni L, Camon E, Blake JA: A procedure for assessing GO annotation consistency. Bioinformatics 2005, 21 Suppl 1:i136-i143.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Dolan, M.E.1
Ni, L.2
Camon, E.3
Blake, J.A.4
-
60
-
-
27544472676
-
Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
-
Mao X, Cai T, Olyarchuk JG, Wei L: Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics 2005, 21:3787-3793.
-
(2005)
Bioinformatics
, vol.21
, pp. 3787-3793
-
-
Mao, X.1
Cai, T.2
Olyarchuk, J.G.3
Wei, L.4
-
61
-
-
12344269924
-
GO::TermFinder - Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
Boyle EI, Weng S, Gollub J, Jin H, Botstein D, Cherry JM, Sherlock G: GO::TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004, 20:3710-3715.
-
(2004)
Bioinformatics
, vol.20
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.2
Gollub, J.3
Jin, H.4
Botstein, D.5
Cherry, J.M.6
Sherlock, G.7
-
62
-
-
0242721216
-
Controlling the familywise error rate in functional neuroimaging: A comparative review
-
Nichols T, Hayasaka S: Controlling the familywise error rate in functional neuroimaging: a comparative review. Stat Methods Med Res 2003, 12:419-446.
-
(2003)
Stat Methods Med Res
, vol.12
, pp. 419-446
-
-
Nichols, T.1
Hayasaka, S.2
-
63
-
-
0037433040
-
Identifying differentially expressed genes using false discovery rate controlling procedures
-
Reiner A, Yekutieli D, Benjamini Y: Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics 2003, 19:368-375.
-
(2003)
Bioinformatics
, vol.19
, pp. 368-375
-
-
Reiner, A.1
Yekutieli, D.2
Benjamini, Y.3
-
64
-
-
33644505189
-
Comparison of false discovery rate methods in identifying genes with differential expression
-
Qian HR, Huang S: Comparison of false discovery rate methods in identifying genes with differential expression. Genomics 2005, 86:495-503.
-
(2005)
Genomics
, vol.86
, pp. 495-503
-
-
Qian, H.R.1
Huang, S.2
-
65
-
-
0036899286
-
From patterns to pathways: Gene expression data analysis comes of age
-
Slonim DK: From patterns to pathways: gene expression data analysis comes of age. Nat Genet 2002, 32 Suppl:502-508.
-
(2002)
Nat Genet
, vol.32
, Issue.SUPPL.
, pp. 502-508
-
-
Slonim, D.K.1
-
66
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey JD, Tibshirani R: Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 2003, 100:9440-9445.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
67
-
-
84874659653
-
-
GO annotation file format
-
GO annotation file format [http://www.geneontology.org/ GO.annotation.html#file]
-
-
-
-
68
-
-
84874661900
-
-
Cyanobase
-
Cyanobase [http://www.kazusa.or.jp/cyanobase/]
-
-
-
-
70
-
-
84874651336
-
-
GenTS
-
GenTS [http://www.strimmerlab.org/software/genets/]
-
-
-
-
71
-
-
84874646293
-
-
GO TermFinder package
-
GO TermFinder package [http://search.cpan.org/~sherlock/ GO-TermFinder-0.64/]
-
-
-
|