Signatures of ecological resource availability in the animal and plant proteomes

Molecular Biology and Evolution

Volumn 23, Issue 10, 2006, Pages 1946-1951

  Elser, James J ^a   Fagan, William F ^b   Subramanian, Sankar ^a,c   Kumar, Sudhir ^a,c  

^a ARIZONA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF MARYLAND   (United States)

^c ARIZONA STATE UNIVERSITY   (United States)

Author keywords

Animal; Nitrogen; Plant; Proteome; Stoichiometry

Indexed keywords

NITROGEN; PROTEOME;

AMINO ACID SEQUENCE; ANOPHELES GAMBIAE; ARABIDOPSIS; ARTICLE; BARLEY; BINDING SITE; CAENORHABDITIS ELEGANS; CHEMICAL COMPOSITION; CHICKEN; CHLAMYDOMONAS REINHARDTII; DANIO RERIO; DROSOPHILA MELANOGASTER; ECOLOGICAL RESOURCE AVAILABILITY; ELEMENTAL COMPOSITION; GENE EXPRESSION REGULATION; GENE FUNCTION; GENETIC CONSERVATION; HUMAN; MAIZE; MOLECULAR BIOLOGY; NONHUMAN; PLANT ECOLOGY; POTATO; PROTEIN CONTENT; PROTEIN STRUCTURE; PROTEOMICS; RESOURCE PARTITIONING; RICE; SOYBEAN; STATISTICAL SIGNIFICANCE; TOMATO; WHEAT; XENOPUS LAEVIS;

AMINO ACIDS; ANIMALS; ECOSYSTEM; GENE EXPRESSION; HUMANS; NITROGEN; PLANTS; PROTEINS; PROTEOME; SPECIES SPECIFICITY;

ANIMALIA;

EID: 33748761394     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl068     Document Type: Article

References (19)

1. Aerts R, Chapin FS. 2000. The mineral nutrition of wild plants revisited: a re-evaluation of processes and patterns. Adv Ecol Res 30:1-67.
2. Akashi H. 2003. Translational selection and yeast proteome evolution. Genetics 164:1291-303.
3. Akashi H, Gojobori T. 2002. Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci USA 99:3695-700.
4. Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-402.
5. Baudouin-Cornu P, Schuerer K, Marlie P, Thomas D. 2004. Intimate evolution of proteins: proteonome atomic content correlates with genome base composition. J Biol Chem 279:5421-8.
6. Baudouin-Cornu P, Surdin-Kerjan Y, Marliere P, Thomas D. 2001. Molecular evolution of protein atomic composition. Science 293:297-300.
7. Bragg JG, Hyder CL. 2004. Nitrogen versus carbon use in prokaryotic genomes and proteomes. Proc R Soc Lond B 271:S374-7.
8. Duret L, Mouchiroud D. 1999. Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc Natl Acad Sci USA 96:4482-7.
9. Elser JJ, Fagan WF, Denno RF, et al. (12 co-authors). 2000. Nutritional constraints in terrestrial and freshwater food webs. Nature 408:578-80.
10. Hilborn R, Mangel M. 1997. The ecological detective: confronting models with data. Princeton, NJ: Princeton University Press.
11. Lehninger AL, Nelson DL, Cox MM. 1993. Principles of biochemistry. New York: Worth Publishers.
12. Lercher MJ, Urrutia AO, Hurst LD. 2002. Clustering of housekeeping genes provides a unified model of gene order in the human genome. Nat Genet 31:180-3.
13. Sokal RR, Rohlf FJ. 1994. Biometry: the principles and practice of statistics in biological research. New York, NY: W.H. Freeman & Company.
14. Sonnhammer EL, Koonin EV. 2002. Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet 18:619-20.
15. Sterner RW, Elser JJ. 2002. Ecological stoichiometry: the biology of elements from molecules to the biosphere. Princeton, NJ: Princeton University Press.
16. Subramanian S, Kumar S. 2004. Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome. Genetics 168:373-81.
17. Thompson JD, Higgins DG, Gibson TJ. 1994. Clustal-W-improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-80.
18. Waterston RH, Lindblad-Toh K, Birney E, et al. (222 co-authors). 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-62.
19. White TCR. 1993. The inadequate environment: nitrogen and the abundance of animals. New York: Springer-Verlag.