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Volumn 88, Issue 4, 2006, Pages 443-451

Use of HAPPY mapping for the higher order assembly of the Tetrahymena genome

Author keywords

Assembly closure; Chromosome breakage sequence; Germ line nucleus; Internally eliminated sequence; Link validation; Macronuclear chromosomes; Sequence scaffolds; Somatic nucleus; Telomeres; Whole genome shotgun sequence

Indexed keywords

ARTICLE; BIOLOGY; CELL NUCLEUS; CELL TYPE; CHROMOSOME; CHROMOSOME SIZE; CILIATE; CONTROLLED STUDY; DIPLOIDY; EUKARYOTE; FERTILIZATION; GENE MAPPING; GENETIC LINKAGE; GENOME; GENOMICS; GENOTYPE; GERM LINE; INHERITANCE; MACRONUCLEUS; MEIOSIS; METAZOON; MICRONUCLEUS; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROGENY; PROTEIN ASSEMBLY; REPRODUCTION; SOMATIC CELL; TETRAHYMENA THERMOPHILA;

EID: 33748696966     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2006.05.002     Document Type: Article
Times cited : (13)

References (21)
  • 1
    • 0037841805 scopus 로고    scopus 로고
    • The deep roots of eukaryotes
    • Baldauf S.L. The deep roots of eukaryotes. Science 300 (2003) 1703-1706
    • (2003) Science , vol.300 , pp. 1703-1706
    • Baldauf, S.L.1
  • 2
    • 0000536476 scopus 로고
    • Sur la nutrition des infusoires
    • Lwoff A. Sur la nutrition des infusoires. C. R. Acad. Sci. Paris 176 (1923) 928-930
    • (1923) C. R. Acad. Sci. Paris , vol.176 , pp. 928-930
    • Lwoff, A.1
  • 3
    • 0036138203 scopus 로고    scopus 로고
    • Functional genomics: the coming of age for Tetrahymena thermophila
    • Turkewitz A.P., Orias E., and Kapler G. Functional genomics: the coming of age for Tetrahymena thermophila. Trends Genet. 18 (2002) 35-40
    • (2002) Trends Genet. , vol.18 , pp. 35-40
    • Turkewitz, A.P.1    Orias, E.2    Kapler, G.3
  • 4
    • 0001562450 scopus 로고
    • La rejeunissement karyogamique chez les cilies
    • Maupas E. La rejeunissement karyogamique chez les cilies. Arch. Zool. Exp. Genet. 7 (1889) 149-517
    • (1889) Arch. Zool. Exp. Genet. , vol.7 , pp. 149-517
    • Maupas, E.1
  • 5
    • 0000900673 scopus 로고
    • Recent advances in the genetics of Paramecium and Euplotes
    • Sonneborn T.M. Recent advances in the genetics of Paramecium and Euplotes. Adv. Genet. 1 (1947) 263-358
    • (1947) Adv. Genet. , vol.1 , pp. 263-358
    • Sonneborn, T.M.1
  • 6
    • 0026665577 scopus 로고
    • Rate of phenotypic assortment in Tetrahymena thermophila
    • Doerder F.P., Deak J.C., and Lief J.H. Rate of phenotypic assortment in Tetrahymena thermophila. Dev. Genet. 13 (1992) 126-132
    • (1992) Dev. Genet. , vol.13 , pp. 126-132
    • Doerder, F.P.1    Deak, J.C.2    Lief, J.H.3
  • 7
    • 0002242459 scopus 로고
    • Site-specific chromosome breakage and DNA deletion in ciliates
    • Berg D.E., and Howe M.M. (Eds), Am. Soc. Microbiol., Washington, DC
    • Yao M.-C. Site-specific chromosome breakage and DNA deletion in ciliates. In: Berg D.E., and Howe M.M. (Eds). Mobile DNA (1989), Am. Soc. Microbiol., Washington, DC 715-734
    • (1989) Mobile DNA , pp. 715-734
    • Yao, M.-C.1
  • 8
    • 25444478572 scopus 로고    scopus 로고
    • Genome-wide characterization of Tetrahymena thermophila chromosome breakage sites: II. Physical and genetic mapping
    • Cassidy-Hanley D., et al. Genome-wide characterization of Tetrahymena thermophila chromosome breakage sites: II. Physical and genetic mapping. Genetics 170 (2005) 1623-1631
    • (2005) Genetics , vol.170 , pp. 1623-1631
    • Cassidy-Hanley, D.1
  • 9
    • 33646229291 scopus 로고    scopus 로고
    • The highly conserved family of Tetrahymena thermophila chromosome breakage elements contains an invariant 10 base pair core
    • Hamilton E., et al. The highly conserved family of Tetrahymena thermophila chromosome breakage elements contains an invariant 10 base pair core. Eukaryotic Cell 5 (2006) 771-780
    • (2006) Eukaryotic Cell , vol.5 , pp. 771-780
    • Hamilton, E.1
  • 10
    • 0030443678 scopus 로고    scopus 로고
    • Genome downsizing during ciliate development: nuclear division of labor through chromosome restructuring
    • Coyne R.S., Chalker D.L., and Yao M.-C. Genome downsizing during ciliate development: nuclear division of labor through chromosome restructuring. Annu. Rev. Genet. 30 (1996) 557-578
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 557-578
    • Coyne, R.S.1    Chalker, D.L.2    Yao, M.-C.3
  • 11
    • 0036013984 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags (ESTs) in the ciliated protozoan Tetrahymena thermophila
    • Fillingham J.S., et al. Analysis of expressed sequence tags (ESTs) in the ciliated protozoan Tetrahymena thermophila. J. Eukaryotic Microbiol. 49 (2002) 99-107
    • (2002) J. Eukaryotic Microbiol. , vol.49 , pp. 99-107
    • Fillingham, J.S.1
  • 12
    • 0041523961 scopus 로고    scopus 로고
    • Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum
    • Bankier A.T., et al. Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum. Genomics 1 (2003) 1787-1799
    • (2003) Genomics , vol.1 , pp. 1787-1799
    • Bankier, A.T.1
  • 13
    • 18344395923 scopus 로고    scopus 로고
    • The genome of the social amoeba Dictyostelium discoideum
    • Eichinger L., et al. The genome of the social amoeba Dictyostelium discoideum. Nature 435 (2005) 43-57
    • (2005) Nature , vol.435 , pp. 43-57
    • Eichinger, L.1
  • 14
    • 0037015625 scopus 로고    scopus 로고
    • Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13
    • Hall N., et al. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Nature 419 (2002) 527-531
    • (2002) Nature , vol.419 , pp. 527-531
    • Hall, N.1
  • 16
    • 0033926879 scopus 로고    scopus 로고
    • Autonomously replicating macronuclear DNA pieces are the physical basis of coassortment groups in Tetrahymena thermophila
    • Wong L., et al. Autonomously replicating macronuclear DNA pieces are the physical basis of coassortment groups in Tetrahymena thermophila. Genetics 155 (2000) 1119-1125
    • (2000) Genetics , vol.155 , pp. 1119-1125
    • Wong, L.1
  • 17
    • 1942535718 scopus 로고    scopus 로고
    • Small RNAs in genome rearrangement in Tetrahymena
    • Mochizuki K., and Gorovsky M.A. Small RNAs in genome rearrangement in Tetrahymena. Curr. Opin. Genet. Dev. 14 (2004) 181-187
    • (2004) Curr. Opin. Genet. Dev. , vol.14 , pp. 181-187
    • Mochizuki, K.1    Gorovsky, M.A.2
  • 18
    • 11844263265 scopus 로고    scopus 로고
    • A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase
    • Mochizuki K., and Gorovsky M.A. A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase. Genes Dev. 19 (2005) 77-89
    • (2005) Genes Dev. , vol.19 , pp. 77-89
    • Mochizuki, K.1    Gorovsky, M.A.2
  • 19
    • 0032964297 scopus 로고    scopus 로고
    • Blast 2 sequences-A new tool for comparing protein and nucleotide sequences
    • Tatusova T.A., and Madden T.L. Blast 2 sequences-A new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174 (1999) 247-250
    • (1999) FEMS Microbiol. Lett. , vol.174 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 20
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Krawetz S., and Misener S. (Eds), Humana Press, Totowa, NJ
    • Rozen S., and Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S., and Misener S. (Eds). Bioinformatics Methods and Protocols: Methods in Molecular Biology (2000), Humana Press, Totowa, NJ 365-386
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 21
    • 25444530605 scopus 로고    scopus 로고
    • Genome-wide characterization of Tetrahymena thermophila chromosome breakage sites. I. Cloning and identification of function sites
    • Hamilton E.P., et al. Genome-wide characterization of Tetrahymena thermophila chromosome breakage sites. I. Cloning and identification of function sites. Genetics 170 (2005) 1611-1621
    • (2005) Genetics , vol.170 , pp. 1611-1621
    • Hamilton, E.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.