Genetic variability analysis of elite upland rice genotypes with SSR markers

Crop Breeding and Applied Biotechnology

Volumn 6, Issue 1, 2006, Pages 9-17

  Brondani, Claudio ^a   Caldeira, Kamylla Da Silva ^a   Borba, Tereza Cristina Oliveira ^a   Rangel, Priscila Nascimento ^a   De Morais, Orlando Peixoto ^a   De Castro, Emílio Da Maia ^a   Rangel, Paulo Hideo Nakano ^a   Mendonça, João Antônio ^a   Brondani, Rosana Vianello ^a  

^a EMBRAPA ARROZ E FEIJÃO   (Brazil)

Author keywords

Genetic distance; Genetic resources; Microsatellite markers; Oryza sativa

Indexed keywords

ORYZA SATIVA;

EID: 33748694112     PISSN: 15187853     EISSN: None     Source Type: Journal    
DOI: 10.12702/1984-7033.v06n01a02     Document Type: Article

References (27)

1. Akagi H, Yokozeki Y, Inugaki A and Fujimura T (1996) Microsatellite DNA markers for rice chromosomes. Theoretical and Applied Genetics 93: 1071-1077.
2. Bassam BJ, Caetano-Anolles G and Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrilamide gels. Analytical Biochemistry 196: 80-83.
3. Brondani C, Brondani RPV, Rangel PHN and Ferreira ME (2001) Development and mapping of Oryza glumaepatula SSR markers at the interspecific cross O. glumaepatula x O. sativa. Hereditas 134: 59-71.
4. Brondani C, Brondani RPV and Rangel PHN (2003) Utilização de marcadores moleculares em programas de ampliação da base genética de espécies cultivadas. Embrapa Arroz e Feijão, Santo Antônio de Goiás, 36p.
5. Castro EM, Vieira NRA, Rabelo RR and Silva S.A. (1999) Qualidade de grãos em arroz. Embrapa Arroz e Feijão, Santo Antônio de Goiás, 30p.
6. Chen X, Temnykh S, Xu Y, Cho YG and McCouch SR (1997) Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L). Theoretical and Applied Genetics 95: 553-567.
7. Coelho ASG (2000) Bood Software Version 3.04. Available upon request at coelho@icb.ufg.br.
8. Efron B, Halloran E and Holmes S (1996) Bootstrap confidence levels for phylogenetic trees. Proceedings of the National Academy of Sciences 93: 13429-13434.
9. Ford-Lloyd BV, Jackson MT and Newbury HJ (1997) Molecular markers and the management of genetic resources in seed genebanks: a case study of rice. In: Callow JA, Ford-Lloyd BV and Newbury HJ (eds.) Biotechnology and plant genetic resources - conservation and use. CAB, Wallingford, p. 103-118.
10. Han B and Xue Y (2003) Genome-wide intraspecific DNA-sequence variations in rice. Current Opinion in Plant Biology 6: 134-138.
11. Lewis PO and Zaykin D (2000) Genetic Data Analysis: Computer program for the analysis of allelic data. Version 1.0 (d15). Available at http://alleyn.ceb.uconn.edu/gda/2000.
12. Li YC, Korol AB, Fahima T, Beiles A and Nevo E (2002) Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Molecular Ecology 11: 2453-2465.
13. Lu H, Redus MA, Coburn JR, Rutger JN, McCouch SR and Tai TH (2005) Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis. Crop Science 45: 66-76.
14. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerk G, Schneider D, Cartinhour S, Ware D and Stein L (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Research 9: 199-207.
15. Ni J, Colowit PM and Mackill DJ (2002) Evaluation of genetic diversity in rice subspecies using microsatellite markers. Crop Science 42: 601-607.
16. Morais OP, Rangel PHN, Fagundes PRR, Castro HM, Neves PCF, Brondani C, Prabhu AS and Magalhães AM (2005) Avanços do Melhoramento Genético do Arroz no Brasil. Anais do III Congresso Brasileiro de Melhoramento de Plantas. SBMP, Viçosa, p. 1-37. (CD-ROM).
17. Powell W, Orozco-Castillo C, Chalmers KJ, Provan J and Waugh R (1995) Polymerase chain reaction-based assays for the characterization of plant genetic resources. Electrophoresis 16: 1726-1730.
18. Rohlf FJ (1989) NTSys-Pc: Numerical Taxonomy and Multivariate Analysis System. Exeter Publisher, New York, 130p.
19. Sefe KM, Steinkellner H, Wagner HW, Glössl J and Regner F (1997) Application of microsatellite markers to parentage studies in grapevine. Vitis 36: 179-183.
20. Singh RK, Sharma RK, Singh AK, Singh VP, Singh NK, Tiwari SP and Mohapatra T (2004). Suitability of mapped sequence tagged microsatellite markers for establishing distinctness, uniformity and stability in aromatic rice. Euphytica 135: 135-143.
21. Spada A, Mantegazza R, Biloni M, Caporali E and Sala F (2004) Italian rice varieties: historical data, molecular markers and pedigrees to reveal their genetic relationships. Plant Breeding 123: 105-111.
22. Virk PS, Ford-Lloyd BV, Jackson MT, Pooni HS, Clemeno TP and Newbury HJ (1996) Predicting quantitative variation within rice germplasm using molecular markers. Heredity 76: 296-304.
23. Xu Y, Beachell H and McCouch SR (2004) A marker-based approach to broadening lhe genetic base of rice in the USA. Crop Science 44: 1947-1959.
24. Yang GP, Saghai Maroof MA, Xu CG, Zhang Q and Biyashev RM (1994) Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Molecular and General Genetics 245: 187-194.
25. Yokoyama LP, Rucatti EG and Kluthcouski J (1999) Economia da produção: conjuntura, mercado e custos. In: Vieira NR, Santos AB and Sant'ana EP (eds.) A cultura do arroz no Brasil. Embrapa Arroz e Feijão, Santo Antônio de Goiás, p. 37-57.
26. Weber JL and May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the Polymerase Chain Reaction. American Journal of Human Genetics 44: 388-396.
27. Wright S (1978) Evolution and the genetics of populations (vol 4). Variability within and among natural populations. University of Chicago, Chicago, 254p.