GeneLibrarian: An effective gene-information summarization and visualization system

BMC Bioinformatics

Volumn 7, Issue , 2006, Pages

  Chiang, Jung Hsien ^a   Shin, Jyh Wei ^b   Liu, Heng Hui ^a   Chin, Chong Liang ^a  

^a NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

^b NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BACKGROUND INFORMATION; BIOMEDICAL LITERATURE; CLUSTERING METHODS; MICRO-ARRAY CHIPS; SEARCHABLE DATABASE; SUMMARIZATION SYSTEMS; VISUALIZATION SYSTEM; WEB APPLICATION;

ALGORITHMS; DATA MINING; NATURAL LANGUAGE PROCESSING SYSTEMS;

GENES;

ARTICLE; BIOINFORMATICS; COMPUTER INTERFACE; COMPUTER LANGUAGE; COMPUTER PROGRAM; GENE CLUSTER; GENETIC ALGORITHM; GENETIC DATABASE; INFORMATION PROCESSING; INTERNET; MICROPROCESSOR; SCIENTIFIC LITERATURE; SEMANTICS; ALGORITHM; CLUSTER ANALYSIS; GENE EXPRESSION; GENETICS; INFORMATION RETRIEVAL; PROCEDURES; REPRODUCIBILITY;

ALGORITHMS; CLUSTER ANALYSIS; DATABASES, GENETIC; GENE EXPRESSION; INFORMATION STORAGE AND RETRIEVAL; INTERNET; REPRODUCIBILITY OF RESULTS; SEMANTICS; SOFTWARE;

EID: 33748679746     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-392     Document Type: Article

References (10)

1. Camon E, Barrell D, Lee V, Dimmer E, Apweiler R: The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase. Silico Biology 2003, 4((1)1):5-6.
2. Drabkin H, Hollenbeck C, Hill D, Blake J: Ontological visualization of protein-protein interactions. BMC Bioinformatics 2005, 6:29.
3. Šarić J, Jensen LJ, Ouzounova R, Rojas I, Bork P: Extraction of regulatory gene/protein networks from Medline. Bioinformatics Advance Access published on July 26 2005. doi:10.1093 /bioinformatics/bti597
4. Lord PW, Stevens RD, Brass A, Goble CA: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 2003, 19:1275-1283.
5. Chiang JH, Yu HC, Hsu HJ: GIS: A Biomedical Text-Mining System for Gene Information Discovery. Bioinformatics 2004, 20(1):120-121.
6. Han J: Data Mining: Concepts and Techniques. Morgan Kaufmann Publishing; 2000.
7. Brill E: A simple rule-based part of speech tagger. Proceeding of the Third Conference on Applied Natural Language Processing 1992:152-155.
8. Sipser M: Introduction the Theory of Computation. Boston, MA: PWS; 1997.
9. BioRag [http://www.biorag.org]
10. Whitfield ML, Sherlock G, Saldanha AJ, Murray JI, Ball CA, Alexander KE, Matese JC, Perou CM, Hurt MM, Brown PO, Botstein D: Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumor. Molecular Biology of the Cell 2002, 13(6):1977-2000.