메뉴 건너뛰기




Volumn 32, Issue 6, 2006, Pages 437-442

New version of Monte Carlo expanded ensemble method for precise calculations of free energy difference

Author keywords

Expanded ensemble; Free energy calculation; Helmholz FED; Monte Carlo

Indexed keywords

ALGORITHMS; COMPUTER SIMULATION; MOLECULAR STRUCTURE; MONTE CARLO METHODS;

EID: 33748564618     PISSN: 08927022     EISSN: 10290435     Source Type: Journal    
DOI: 10.1080/08927020600788898     Document Type: Article
Times cited : (6)

References (16)
  • 1
    • 0042640726 scopus 로고
    • Some topics in the theory of fluids
    • B. Widom. Some topics in the theory of fluids. J. Chem. Phys., 39, 2808 (1963).
    • (1963) J. Chem. Phys. , vol.39 , pp. 2808
    • Widom, B.1
  • 2
    • 36849102835 scopus 로고
    • Monte Carlo estimation of the free energy by multistage sampling
    • J.P. Valleau, D.N. Card. Monte Carlo estimation of the free energy by multistage sampling. J. Chem. Phys., 57, 5457 (1972).
    • (1972) J. Chem. Phys. , vol.57 , pp. 5457
    • Valleau, J.P.1    Card, D.N.2
  • 3
    • 5244304444 scopus 로고
    • Efficient estimation of free energy differences from Monte Carlo data
    • C.H. Bennet. Efficient estimation of free energy differences from Monte Carlo data. J. Comput. Phys., 22, 245 (1976).
    • (1976) J. Comput. Phys. , vol.22 , pp. 245
    • Bennet, C.H.1
  • 4
    • 0342929614 scopus 로고
    • Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling
    • G.M. Torrie, J.P. Valleau. Nonphysical sampling distributions in Monte Carlo free-energy estimation: umbrella sampling, J. Comput. Phys., 23, 187(1977).
    • (1977) J. Comput. Phys. , vol.23 , pp. 187
    • Torrie, G.M.1    Valleau, J.P.2
  • 6
    • 36549104841 scopus 로고
    • Free energy of hydrophobic hydration: A molecular dynamics study of noble gases in water
    • T.P. Straatsma, H.J.C. Berendsen, J.P.M. Postma. Free energy of hydrophobic hydration: a molecular dynamics study of noble gases in water. J. Chem. Phys., 85, 6720 (1986).
    • (1986) J. Chem. Phys. , vol.85 , pp. 6720
    • Straatsma, T.P.1    Berendsen, H.J.C.2    Postma, J.P.M.3
  • 8
    • 0000521710 scopus 로고    scopus 로고
    • Quantitative comparison and optimization of methods for evaluating the chemical potential by molecular simulation
    • D.A. Kofke, P.T. Cummings. Quantitative comparison and optimization of methods for evaluating the chemical potential by molecular simulation. Mol. Phys., 92, 973 (1997).
    • (1997) Mol. Phys. , vol.92 , pp. 973
    • Kofke, D.A.1    Cummings, P.T.2
  • 9
    • 0035600220 scopus 로고    scopus 로고
    • Extended ensemble Monte Carlo
    • Y. Iba. Extended ensemble Monte Carlo. Int. J. Modern Phys. C, 12, 623 (2001).
    • (2001) Int. J. Modern Phys. C , vol.12 , pp. 623
    • Iba, Y.1
  • 11
    • 7544220942 scopus 로고
    • Analysis of classical statistical mechanics by means of collective coordinates
    • J.K. Percus, G.J. Yevick. Analysis of classical statistical mechanics by means of collective coordinates. Phys, Rev, 110, 1 (1958).
    • (1958) Phys, Rev , vol.110 , pp. 1
    • Percus, J.K.1    Yevick, G.J.2
  • 12
    • 0001117617 scopus 로고
    • Equation of state for nonattracting rigid spheres
    • N.F. Carnahan, K.E. Starling. Equation of state for nonattracting rigid spheres. J. Chem. Phys., 51, 635 (1969).
    • (1969) J. Chem. Phys. , vol.51 , pp. 635
    • Carnahan, N.F.1    Starling, K.E.2
  • 13
    • 0012002071 scopus 로고
    • Studies in molecular dynamics. II. Behavior of a small number of elastic spheres
    • B.J. Alder, T.E. Wainwright. Studies in molecular dynamics. II. Behavior of a small number of elastic spheres. J. Chem. Phys., 33, 1439 (1960).
    • (1960) J. Chem. Phys. , vol.33 , pp. 1439
    • Alder, B.J.1    Wainwright, T.E.2
  • 15
    • 0002061484 scopus 로고
    • New Monte Carlo algorithm: Entropie sampling
    • J. Lee. New Monte Carlo algorithm: entropie sampling. Phys. Rev. Lew., 71, 211 (1993).
    • (1993) Phys. Rev. Lew. , vol.71 , pp. 211
    • Lee, J.1
  • 16
    • 6644221271 scopus 로고    scopus 로고
    • Efficient, multiple-range random walk algorithm to calculate the density of states
    • F. Wang, D.P. Landau. Efficient, multiple-range random walk algorithm to calculate the density of states. Phys. Rev. Lett., 86, 2050 (2001).
    • (2001) Phys. Rev. Lett. , vol.86 , pp. 2050
    • Wang, F.1    Landau, D.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.