Fundamental and biotechnological applications of neutron scattering measurements for macromolecular dynamics

European Biophysics Journal

Volumn 35, Issue 7, 2006, Pages 551-558

  Tehei, Moeava ^a   Daniel, Roy ^b   Zaccai, Giuseppe ^a,c  

^a INSTITUT LAUE LANGEVIN   (France)

^b UNIVERSITY OF WAIKATO   (New Zealand)

^c INSTITUT DE BIOLOGIE STRUCTURALE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DIHYDROFOLATE REDUCTASE; LACTATE DEHYDROGENASE; MALATE DEHYDROGENASE;

ARTICLE; BIOTECHNOLOGY; ENZYME ACTIVITY; ENZYME IMMOBILIZATION; ENZYME STABILITY; ESCHERICHIA COLI; HIGH TEMPERATURE; MACROMOLECULE; METHANOCOCCUS JANNASCHII; MOLECULAR DYNAMICS; MOLECULAR MECHANICS; MUSCLE; NEUTRON SCATTERING; NONHUMAN; RIGIDITY; SPECTROSCOPY; TEMPERATURE ACCLIMATIZATION; THERMOPHILIC BACTERIUM;

ANIMALS; ENZYME STABILITY; ESCHERICHIA COLI; HEAT; HOT TEMPERATURE; KINETICS; L-LACTATE DEHYDROGENASE; MALATE DEHYDROGENASE; METHANOCOCCUS; MODELS, MOLECULAR; MUSCLES; NEUTRONS; PROTEIN CONFORMATION; RABBITS; SCATTERING, RADIATION; TETRAHYDROFOLATE DEHYDROGENASE; THERMODYNAMICS;

ESCHERICHIA COLI; METHANOCALDOCOCCUS JANNASCHII; ORYCTOLAGUS;

EID: 33748559079     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00249-006-0082-6     Document Type: Article

References (38)

1. Agarwal PK, Billeter SR, Rajagopalan PT, Benkovic SJ, Hammes-Schiffer S (2002) Network of coupled promoting motions in enzyme catalysis. Proc Natl Acad Sci USA 99:2794-2799
2. Baccanari D, Phillips A, Smith S, Sinski D, Burchall J (1975) Purification and properties of Escherichia coli dihydrofolate reductase. Biochemistry 14:5267-5273
3. Bée M (1988) Quasielastic neutron scattering: principles and applications in solid state chemistry, biology and materials science. Adam Hilger, Bristol
4. Bellissent-Funel M-C, Zanotti J-M, Chen S-H (1996) Slow dynamics of water molecules on the surface of a globular protein. Faraday Discuss 103:281-294
5. Bicout DJ, Zaccai G (2001) Protein flexibility from the dynamical transition: a force constant analysis. Biophys J 80:1115-1123
6. Blun LJ, Coulet PR (1990) Biosensors: principles and applications. Dekker, New York
7. Bu Z, Neumann DA, Lee SH, Brown CM, Engelman DM, Han CC (2000) A view of dynamics changes in the molten globule-native folding step by quasielastic neutron scattering. J Mol Biol 301:525-536
8. Chen SH (1991) Hydrogen bonded liquids. In: Dore JC, Teixeira J (eds) NATO ASI Series, vol 329. Kluwer, Dordrecht
9. Dalhus B, Saarinen M, Sauer UH, Eklund P, Johansson K, Karlsson A, Ramaswamy S, Bjork A, Synstad B, Naterstad K, Sirevag R, Eklund H (2002) Structural basis for thermophilic protein stability: structures of thermophilic and mesophilic malate dehydrogenases. J Mol Biol 318:707-721
10. Egelstaff PA (1972) Quasielastic neutron scattering for the investigation of diffusive motions in solids and liquids. Springer, Berlin Heidelberg, New York
11. Eggers DK, Valentine JS (2001) Molecular confinement influences protein structure and enhances thermal protein stability. Protein Sci 10:250-261
12. Gabel F (2005) Protein dynamics in solution and powder measured by incoherent elastic neutron scattering: the influence of Q-range and energy resolution. Eur Biophys J 34:1-12
13. Gabel F, Bicout D, Lehnert U, Tehei M, Weik M, Zaccai G (2002) Protein dynamics studied by neutron scattering. Q Rev Biophys 35:327-367
14. Guinier A, Fournet G (1955) Small angle scattering of X-rays. Wiley, New York
15. Hall PL, Ross DK (1981) Incoherent neutron scattering functions for random jump diffusion in bounded and infinite media. Mol Phys 42:673-682
16. Huennekens FM (1994) The methotrexate story: a paradigm for development of cancer chemotherapeutic agents. Adv Enzyme Regul 34:397-419
17. Irimia A, Vellieux FM, Madern D, Zaccai G, Karshikoff A, Tibbelin G, Ladenstein R, Lien T, Birkeland NK (2004) The 2.9A resolution crystal structure of malate dehydrogenase from Archaeoglobus fulgidus: mechanisms of oligomerisation and thermal stabilisation. J Mol Biol 335:343-356
18. Jaenicke R (1991) Protein stability and molecular adaptation to extreme conditions. Eur J Biochem 202:715-728
19. Katchalski-Katzir E (1993) Immobilized enzymes - learning from past successes and failures. Trends Biotechnol 11:471-478
20. Klibanov AM (1983) Immobilized enzymes and cells as practical catalysts. Science 219:722-727
21. Lee BI, Chang C, Cho SJ, Eom SH, Kim KK, Yu YG, Suh SW (2001) Crystal structure of the MJ0490 gene product of the hyperthermophilic archaebacterium Methanococcus jannaschii, a novel member of the lactate/malate family of dehydrogenases. J Mol Biol 307:1351-1362
22. Lehnert U, Reat V, Weik M, Zaccai G, Pfister C (1998) Thermal motions in bacteriorhodopsin at different hydration levels studied by neutron scattering: correlation with kinetics and light-induced conformational changes. Biophys J 75:1945-1952
23. Longeville S, Doster W, Kali G (2003) Myoglobin in crowded solutions: structure and diffusion. Chem Phys 292:413-424
24. Madern D (2000) The putative L-lactate dehydrogenase from methanococcus jannaschii is an NADPH-dependent L-malate dehydrogenase (in process citation). Mol Microbiol 37:1515-1520
25. Madern D (2002) Molecular evolution within the L-malate and L-lactate dehydrogenase super-family. J Mol Evol 54:825-840
26. Moreno JM, Sinisterra JV (1994) Immobilization of lipase from Candida cylindracea on inorganic supports. J Mol Catal 93:357-369
27. Réat V, Zaccai G, Ferrand M, Pfister C (1997) Biological macromolecular dynamics. Adenine Press, Schenectady, NY, USA
28. Riveros-Moreno V, Wittenberg JB (1972) The self-diffusion coefficients of myoglobin and hemoglobin in concentrated solutions. J Biol Chem 247:895-901
29. Simpson HD, Haufler UR, Daniel RM (1991) An extremely thermostable xylanase from the thermophilic eubacterium Thermotoga. Biochem J 277(Pt 2):413-417
30. Sinisterra JV (1997) Immobilization of enzymes on inorganic supports by covalent methods. In: Bickerstaff GF (ed) Immobilization of enzymes and cells. Humana Press, Totowa
31. Smith JC (1991) Protein dynamics: comparison of simulations with inelastic neutron scattering experiments. Q Rev Biophys 24:227-291
32. Tanaka A, Tosa T, Kobayashi T (1993) Industrial applications of immobilized biocatalysts, vol 21. Dekker, New York
33. Tehei M, Madern D, Pfister C, Zaccai G (2001) Fast dynamics of halophilic malate dehydrogenase and BSA measured by neutron scattering under various solvent conditions influencing protein stability. Proc Natl Acad Sci USA 98:14356-14361
34. Tehei M, Madern D, Franzetti B, Zaccai G (2005) Neutron scattering reveals the dynamic basis of protein adaptation to extreme temperature. J Biol Chem 280:40974-40979
35. Tehei M, Smith JC, Monk C, Ollivier J, Oettl M, Kurkal V, Finney JL, Daniel RM (2006) Dynamics of immobilized and native Escherichia coli dihydrofolate reductase by quasi-elastic neutron scattering. Biophys J 90:1090-1097
36. Volino F, Dianoux AJ (1980) Neutron incoherent scattering law for diffusion in a potential of spherical symmetry: general formalism and application to diffusion inside a sphere. Mol Phys 41:271-279
37. Zaccai G (2000) How soft is a protein? A protein dynamics force constant measured by neutron scattering. Science 288:1604-1607
38. Zhou HX, Dill KA (2001) Stabilization of proteins in confined spaces. Biochemistry 40:11289-11293