-
2
-
-
0028228418
-
-
Dunitz, J. D. Science. 1994, 264, 670-671.
-
(1994)
Science.
, vol.264
, pp. 670-671
-
-
Dunitz, J.D.1
-
3
-
-
0001307815
-
-
Ladbury, J. E., Connelly, P. R., Eds.; Springer-Verlag: Berlin, Heidelberg, New York, Chapter 5
-
Connelly, P. R. Structure-Based Drug Design: Thermodynamics, Modeling and Strategy; Ladbury, J. E., Connelly, P. R., Eds.; Springer-Verlag: Berlin, Heidelberg, New York, 1997; Chapter 5, pp 143-159.
-
(1997)
Structure-Based Drug Design: Thermodynamics, Modeling and Strategy
, pp. 143-159
-
-
Connelly, P.R.1
-
7
-
-
0026189146
-
-
Wade, R.; Mazor, M.; McCammon, J.; Quiocho, F. Biopolymers 1991, 31, 919-931.
-
(1991)
Biopolymers
, vol.31
, pp. 919-931
-
-
Wade, R.1
Mazor, M.2
McCammon, J.3
Quiocho, F.4
-
8
-
-
0029757992
-
-
Roux, B.; Nina, M.; Pomès, R.; Smith, J. Biophys. J. 1996, 71, 670-681.
-
(1996)
Biophys. J.
, vol.71
, pp. 670-681
-
-
Roux, B.1
Nina, M.2
Pomès, R.3
Smith, J.4
-
9
-
-
0029937870
-
-
Zhang, L.; Hermans, J. Proteins: Struct., Funct., Genet. 1996, 24, 433-438.
-
(1996)
Proteins: Struct., Funct., Genet.
, vol.24
, pp. 433-438
-
-
Zhang, L.1
Hermans, J.2
-
12
-
-
0027474739
-
-
Kageyama, S.; Mimoto, T.; Murakawa, Y.; Nomizu, M.; Ford Jr, H.; Shirasaka, T.; Gulnik, S.; Erickson, J.; Takada, K.; Hayashi, H. Antimicrob. Agents. Chemother. 1993, 37, 810-817.
-
(1993)
Antimicrob. Agents. Chemother.
, vol.37
, pp. 810-817
-
-
Kageyama, S.1
Mimoto, T.2
Murakawa, Y.3
Nomizu, M.4
Ford Jr., H.5
Shirasaka, T.6
Gulnik, S.7
Erickson, J.8
Takada, K.9
Hayashi, H.10
-
13
-
-
0029644939
-
-
Baldwin, E. T.; Bhat, T. N.; Gulnik, S.; Liu, B.; Topol, I. A.; Kiso, Y.; Mimoto, T.; Mitsuya, H.; Erickson, J. W. Structure 1995, 3, 581-590.
-
(1995)
Structure
, vol.3
, pp. 581-590
-
-
Baldwin, E.T.1
Bhat, T.N.2
Gulnik, S.3
Liu, B.4
Topol, I.A.5
Kiso, Y.6
Mimoto, T.7
Mitsuya, H.8
Erickson, J.W.9
-
14
-
-
0030474628
-
-
Wang, Y. X.; Freedberg, D. I.; Wingfield, P. T.; Stahl, S. J.; Kaufman, J. D.; Kiso, Y.; Bhat, T. N.; Erickson, J. W.; Torchia, D. A. J. Am. Chem. Soc. 1996, 118, 12287-12290.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 12287-12290
-
-
Wang, Y.X.1
Freedberg, D.I.2
Wingfield, P.T.3
Stahl, S.J.4
Kaufman, J.D.5
Kiso, Y.6
Bhat, T.N.7
Erickson, J.W.8
Torchia, D.A.9
-
16
-
-
0028057975
-
-
Lam, P. Y. S.; et al. Science 1994. 263, 380-384.
-
(1994)
Science
, vol.263
, pp. 380-384
-
-
Lam, P.Y.S.1
-
18
-
-
0029757151
-
-
Wang, Y. X.; Freedberg, D. I.; Yamazaki, T.; Wingfield, P. T.; Stahl, S. J.; Kaufman, J. D.; Kiso, Y.; Torchia, D. A. Biochemistry 1996, 35, 9945-9950.
-
(1996)
Biochemistry
, vol.35
, pp. 9945-9950
-
-
Wang, Y.X.1
Freedberg, D.I.2
Yamazaki, T.3
Wingfield, P.T.4
Stahl, S.J.5
Kaufman, J.D.6
Kiso, Y.7
Torchia, D.A.8
-
21
-
-
0026047763
-
-
Ferguson, D. M.; Radmer, R. J.; Kollman, P. A. J. Med. Chem. 1991, 34, 2654-2659.
-
(1991)
J. Med. Chem.
, vol.34
, pp. 2654-2659
-
-
Ferguson, D.M.1
Radmer, R.J.2
Kollman, P.A.3
-
22
-
-
0031058541
-
-
Gilson, M. K.; Given, J. A.; Bush, B. L.; McCammon, J. A. Biophys. J. 1997, 72, 1047-1069.
-
(1997)
Biophys. J.
, vol.72
, pp. 1047-1069
-
-
Gilson, M.K.1
Given, J.A.2
Bush, B.L.3
McCammon, J.A.4
-
23
-
-
0029757992
-
-
Roux, B.; Nina, M.; Pomès R.; Smith J. C. Biophys. J. 1996, 71, 670-681.
-
(1996)
Biophys. J.
, vol.71
, pp. 670-681
-
-
Roux, B.1
Nina, M.2
Pomès, R.3
Smith, J.C.4
-
24
-
-
9244260409
-
-
University of California: San Francisco
-
Case, D. A.; et al. AMBER 8; University of California: San Francisco, 2004.
-
(2004)
AMBER 8
-
-
Case, D.A.1
-
25
-
-
0004195760
-
-
University of California: San Francisco
-
Case, D. A.; et al. AMBER 7; University of California: San Francisco, 2002.
-
(2002)
AMBER 7
-
-
Case, D.A.1
-
26
-
-
0033954256
-
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne P. E. Nucleic Acids Res. 2000, 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
27
-
-
0025991290
-
-
Hyland, L. J.; et al. Biochemistry 1991, 30, 8441-8453.
-
(1991)
Biochemistry
, vol.30
, pp. 8441-8453
-
-
Hyland, L.J.1
-
28
-
-
0023434194
-
-
Suguna, K.; Padlan, E. A.; Simth, C. W.; Carlson, W. D. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 7009-7013.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 7009-7013
-
-
Suguna, K.1
Padlan, E.A.2
Simth, C.W.3
Carlson, W.D.4
-
29
-
-
3042524904
-
-
Bayly, C. I.; Cieplak, P.; Cornell, W. D.; Kollman, P. A. J. Phys. Chem. 1993, 97, 10269-10280.
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 10269-10280
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.D.3
Kollman, P.A.4
-
30
-
-
0000667030
-
-
Cornell, W. D.; Cieplak, P.; Balyl, C. I.; Kollman, P. A. J. Am. Chem. Soc. 1993, 115, 9620-9631.
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 9620-9631
-
-
Cornell, W.D.1
Cieplak, P.2
Balyl, C.I.3
Kollman, P.A.4
-
32
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Could, I. R.; Merz, K. M.; Ferguson, D. M., Jr.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Could, I.R.4
Merz, K.M.5
Ferguson Jr., D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
33
-
-
0001398008
-
-
Wang, J.; Cieplak, P.; Kollman, P. A. J. Comput. Chem. 2000, 21, 1049-1074.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
34
-
-
0004016501
-
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. J. Chem. Phys. 1983, 79, 926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
35
-
-
33750587438
-
-
Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.; DiNola, A. J. Chem. Phys 1984, 81, 3684-3690.
-
(1984)
J. Chem. Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
DiNola, A.4
-
36
-
-
33645961739
-
-
Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G. J. Chem. Phys. 1995, 103, 8577-8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
37
-
-
0041754408
-
Free energy calculations
-
Becker, O., MacKerell, A. D., Roux, B., Watanabe, M., Eds.; New York: Marcel Dekker
-
Simonson, T. Free energy calculations. In Computational Biochemistry and Biophysics; Becker, O., MacKerell, A. D., Roux, B., Watanabe, M., Eds.; New York: Marcel Dekker: 2001; pp 169-197.
-
(2001)
Computational Biochemistry and Biophysics
, pp. 169-197
-
-
Simonson, T.1
-
39
-
-
0000542804
-
-
Jorgensen, W. L.; Blake, J. F.; Buckner, J. K. Chem. Phys. 1989, 129, 193-200.
-
(1989)
Chem. Phys.
, vol.129
, pp. 193-200
-
-
Jorgensen, W.L.1
Blake, J.F.2
Buckner, J.K.3
-
40
-
-
0032501383
-
-
Luo, X.; Kato, R.; Collins, J. R. J. Am. Chem. Soc. 1998, 120, 12410-12418.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 12410-12418
-
-
Luo, X.1
Kato, R.2
Collins, J.R.3
-
41
-
-
0028328704
-
-
Hosur, M. V.; Bhat, T. N.; Kempf, D. J.; Baldwin, E. T.; Liu, B. S.; Gulnik, S.; Wideburg, N. E.; Norbeck, D. W.; Appell, K.; Erickson, J. W. J. Am. Chem. Soc. 1994, 116, 847-855.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 847-855
-
-
Hosur, M.V.1
Bhat, T.N.2
Kempf, D.J.3
Baldwin, E.T.4
Liu, B.S.5
Gulnik, S.6
Wideburg, N.E.7
Norbeck, D.W.8
Appell, K.9
Erickson, J.W.10
-
43
-
-
0027943157
-
-
Chen, Z.; Li, Y.; Chen, E.; Hall, D. L.; Darke, P. L.; Culberson, C.; Shafer, J. A.; Kuo, L. C. J. Biol. Chem. 1994, 269, 26344-26348.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 26344-26348
-
-
Chen, Z.1
Li, Y.2
Chen, E.3
Hall, D.L.4
Darke, P.L.5
Culberson, C.6
Shafer, J.A.7
Kuo, L.C.8
-
44
-
-
4143081344
-
-
Fornabaio, M.; Spyrakis, F.; Mozzarelli, A.; Cozzini, P.; Abraham, D. J.; Kellogg, G. E. J. Med. Chem. 2004, 47, 4507-4516.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 4507-4516
-
-
Fornabaio, M.1
Spyrakis, F.2
Mozzarelli, A.3
Cozzini, P.4
Abraham, D.J.5
Kellogg, G.E.6
-
45
-
-
0035055493
-
-
Kellogg, G. E.; Burnett, J. C.; Abraham, D. J. J. Comput.-Aided Mol. Des. 2001, 15, 381-393.
-
(2001)
J. Comput.-Aided Mol. Des.
, vol.15
, pp. 381-393
-
-
Kellogg, G.E.1
Burnett, J.C.2
Abraham, D.J.3
-
47
-
-
2142813682
-
-
van Gunsteren, W. F.; Berendsen, H. J. C. Angew. Chem., Int. Ed. Engl. 1990, 29, 992-1023.
-
(1990)
Angew. Chem., Int. Ed. Engl.
, vol.29
, pp. 992-1023
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
49
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M., Jr.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
50
-
-
0001398008
-
-
Wang, J.; Cieplak, P.; Kollman, P. A. J. Comput. Chem. 2000, 21, 1049-1074.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
|