Temporal transcription program of recombinant Autographa californica multiple nucleopolyhedrosis virus

Journal of Virology

Volumn 80, Issue 18, 2006, Pages 8989-8999

  Jiang, Shih Sheng ^a   Chang, I Shou ^a   Huang, Lin Wei ^a   Chen, Po Cheng ^a   Wen, Chi Chung ^a   Liu, Shu Chen ^a   Chien, Li Chu ^a   Lin, Chung Yen ^a   Hsiung, Chao A ^a   Juang, Jyh Lyh ^a  

^a NATIONAL HEALTH RESEARCH INSTITUTES   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSACTIVATOR PROTEIN; TRANSACTIVATOR PROTEIN PE38; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ARTICLE; AUTOGRAPHA CALIFORNICA; BACULOVIRUS; CELL KINETICS; CONTROLLED STUDY; DNA MICROARRAY; GENE CONTROL; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETIC ANALYSIS; GENETIC TRANSDUCTION; INSECT CELL; LEPIDOPTERA; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYHEDROSIS VIRUS; PRIORITY JOURNAL; TIME; TRANSACTIVATION; TRANSCRIPTION REGULATION; VIRUS CELL INTERACTION; VIRUS GENE; VIRUS INFECTION; VIRUS MORPHOLOGY; VIRUS RECOMBINANT; VIRUS STRAIN;

ANIMALS; BACULOVIRIDAE; CELL LINE; CLUSTER ANALYSIS; GENE EXPRESSION REGULATION, VIRAL; INSECTS; KINETICS; MOTHS; NUCLEOPOLYHEDROVIRUS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RECOMBINANT PROTEINS; TIME FACTORS; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION, GENETIC; VIRUS REPLICATION;

AUTOGRAPHA CALIFORNICA; AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; HEXAPODA; NUCLEOPOLYHEDROVIRUS;

EID: 33748490905     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.01158-06     Document Type: Article

References (54)

1. Ayres, M. D., S. C. Howard, J. Kuzio, M. Lopez-Ferber, and R. D. Possee. 1994. The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology 202:586-605.
2. Baliga, N. S., M. Pan, Y. A. Goo, E. C. Yi, D. R. Goodlett, K. Dimitrov, P. Shannon, R. Aebersold, W. V. Ng, and L. Hood. 2002. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proc. Natl. Acad. Sci. USA 99:14913-14918.
3. Blissard, G. W., P. H. Kogan, R. Wei, and G. F. Rohrmann. 1992. A synthetic early promoter from a baculovirus: roles of the TATA box and conserved start site CAGT sequence in basal levels of transcription. Virology 190:783-793.
4. Blissard, G. W., and G. F. Rohrmann. 1991. Baculovirus gp64 gene expression: analysis of sequences modulating early transcription and transactivation by IE1. J. Virol. 65:5820-5827.
5. Bonning, B. C., and B. D. Hammock. 1996. Development of recombinant baculoviruses for insect control. Annu. Rev. Entomol. 41:191-210.
6. Chambers, J., A. Angulo, D. Amaratunga, H. Guo, Y. Jiang, J. S. Wan, A. Bittner, K. Frueh, M. R. Jackson, P. A. Peterson, M. G. Erlander, and P. Ghazal. 1999. DNA microarrays of the complex human cytomegalovirus genome: profiling kinetic class with drug sensitivity of viral gene expression. J. Virol. 73:5757-5766.
7. Chang, I.-S., C. A. Hsiung, C.-C. Wen, and Y.-J. Wu. 2006. A note on the consistency in Bayesian shape-restricted regression with random Bernstein polynomials, p. 36-44. In C. H. Zhang, Z. Ying, and C. A. Hsiung (ed.), Random walks, sequential analysis and related topics: a festschrift in honor of Y. S. Chow. World Scientific, Singapore.
8. Chang, I.-S., C. A. Hsiung, Y.-J. Wu, and C.-C. Yang. 2005. Bayesian survival analysis using Bernstein polynomials. Scand. J. Stat. 32:447-466.
9. Chen, T., D. Sahri, and E. B. Carstens. 2004. Characterization of the interaction between P143 and LEF-3 from two different baculovirus species: Choristoneura fumiferana nucleopolyhedrovirus LEF-3 can complement Autographa californica nucleopolyhedrovirus LEF-3 in supporting DNA replication. J. Virol. 78:329-339.
10. Dickson, J. A., and P. D. Friesen. 1991. Identification of upstream promoter elements mediating early transcription from the 35,000-molecular-weight protein gene of Autographa californica nuclear polyhedrosis virus. J. Virol. 65:4006-4016.
11. Dittmer, D., M. Lagunoff, R. Renne, K. Staskus, A. Haase, and D. Ganem. 1998. A cluster of latently expressed genes in Kaposi's sarcoma-associated herpesvirus. J. Virol. 72:8309-8315.
12. Friesen, P. D. 1997. Regulation of baculovirus early gene expression, p. 141-166. In L. K. Miller (ed.), The baculoviruses. Plenum, New York, N.Y.
13. Friesen, P. D., and L. K. Miller. 2001. Insect viruses, p. 602-612. In D. M. Knipe, P. M. Howley, D. E. Griffin, M. A. Martin, R. A. Lamb, B. Roizman, and S. E. Straus (ed.), Fields' virology, 4th ed., vol. 1. Lippincott Williams & Wilkins, Philadelphia, Pa.
14. Gillespie, L. S., K. K. Hillesland, and D. J. Knauer. 1991. Expression of biologically active human antithrombin III by recombinant baculovirus in Spodoptera frugiperda cells. J. Biol. Chem. 266:3995-4001.
15. Grula, M. A., P. L. Buller, and R. F. Weaver. 1981. α-Amanitin- resistant viral RNA synthesis in nuclei isolated from nuclear polyhedrosis virus-infected Heliothis zea larvae and Spodoptera frugiperda cells. J. Virol. 38:916-921.
16. Guarino, L. A., and M. Smith. 1992. Regulation of delayed-early gene transcription by dual TATA boxes. J. Virol. 66:3733-3739.
17. Hall, P., and N. E. Heckman. 2002. Estimating and depicting the structure of a distribution of random functions. Biometrika 89:145-158.
18. Herniou, E. A., J. A. Olszewski, J. S. Cory, and D. R. O'Reilly. 2003. The genome sequence and evolution of baculoviruses. Annu. Rev. Entomol. 48:211-234.
19. Ho, C. K., and S. Shuman. 2002. Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains. Proc. Natl. Acad. Sci. USA 99:12709-12714.
20. Ho, Y., H. R. Lo, T. C. Lee, C. P. Wu, and Y. C. Chao. 2004. Enhancement of correct protein folding in vivo by a non-lytic baculovirus. Biochem. J. 382:695-702.
21. Huh, N. E., and R. F. Weaver. 1990. Identifying the RNA polymerases that synthesize specific transcripts of the Autographa californica nuclear polyhedrosis virus. J. Gen. Virol. 71(Pt. 1):195-201.
22. Inceoglu, A. B., S. G. Kamita, A. C. Hinton, Q. Huang, T. F. Severson, K. Kang, and B. D. Hammock. 2001. Recombinant baculoviruses for insect control. Pest Manag. Sci. 57:981-987.
23. Knebel-Mörsdorf, D., A. Kremer, and F. Jahnel. 1993. Baculovirus gene ME53, which contains a putative zinc finger motif, is one of the major early-transcribed genes. J. Virol. 67:753-758.
24. Kogan, P. H., X. Chen, and G. W. Blissard. 1995. Overlapping TATA-dependent and TATA-independent early promoter activities in the baculovirus gp64 envelope fusion protein gene. J. Virol. 69:1452-1461.
25. Kool, M., C. H. Ahrens, R. W. Goldbach, G. F. Rohrmann, and J. M. Vlak. 1994. Identification of genes involved in DNA replication of the Autographa californica baculovirus. Proc. Natl. Acad. Sci. USA 91:11212-11216.
26. Krappa, R., and D. Knebel-Mörsdorf. 1991. Identification of the very early transcribed baculovirus gene PE-38. J. Virol. 65:805-812.
27. Lagreid, A., T. R. Hvidsten, H. Midelfart, J. Komorowski, and A. K. Sandvik. 2003. Predicting gene ontology biological process from temporal gene expression patterns. Genome Res. 13:965-979.
28. Lee, D. F., C. C. Chen, T. A. Hsu, and J. L. Juang. 2000. A baculovirus superinfection system: efficient vehicle for gene transfer into Drosophila S2 cells. J. Virol. 74:11873-11880.
29. Lewin, B. 2000. The operon. Oxford University Press, New York, N.Y.
30. Li, L., S. H. Harwood, and G. F. Rohrmann. 1999. Identification of additional genes that influence baculovirus late gene expression. Virology 255:9-19.
31. Li, Y., A. L. Passarelli, and L. K. Miller. 1993. Identification, sequence, and transcriptional mapping of lef-3, a baculovirus gene involved in late and very late gene expression. J. Virol. 67:5260-5268.
32. Lin, G., and G. W. Blissard. 2002. Analysis of an Autographa californica nucleopolyhedrovirus lef-11 knockout: LEF-11 is essential for viral DNA replication. J. Virol. 76:2770-2779.
33. Lu, A., and E. B. Carstens. 1993. Immediate-early baculovirus genes transactivate the p143 gene promoter of Autographa californica nuclear polyhedrosis virus. Virology 195:710-718.
34. Lu, A., and E. B. Carstens. 1991. Nucleotide sequence of a gene essential for viral DNA replication in the baculovirus Autographa californica nuclear polyhedrosis virus. Virology 181:336-347.
35. Lu, A., and L. K. Miller. 1997. Regulation of baculovirus late and very late gene expression, p. 193-211. In L. K. Miller (ed.), The baculoviruses. Plenum, New York, N.Y.
36. Lu, A., and L. K. Miller. 1995. The roles of eighteen baculovirus late expression factor genes in transcription and DNA replication. J. Virol. 69:975-982.
37. Mans, R. M., and D. Knebel-Morsdorf. 1998. In vitro transcription of pe38/polyhedrin hybrid promoters reveals sequences essential for recognition by the baculovirus-induced RNA polymerase and for the strength of very late viral promoters. J. Virol. 72:2991-2998.
38. McDonald, M. J., and M. Rosbash. 2001. Microarray analysis and organization of circadian gene expression in Drosophila. Cell 107:567-578.
39. Milks, M. L., J. O. Washburn, L. G. Willis, L. E. Volkman, and D. A. Theilmann. 2003. Deletion of pe38 attenuates AcMNPV genome replication, budded virus production, and virulence in heliothis virescens. Virology 310:224-234.
40. Miller, L. K. 1995. Genetically engineered insect virus pesticides: present and future. J. Invertebr. Pathol. 65:211-216.
41. Nielsen, H. B., and S. Knudsen. 2002. Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays. Bioinformatics 18:321-322.
42. Ohresser, M., N. Morin, M. Cerutti, and C. Delsert. 1994. Temporal regulation of a complex and unconventional promoter by viral products. J. Virol. 68:2589-2597.
43. Paulose-Murphy, M., N. K. Ha, C. Xiang, Y. Chen, L. Gillim, R. Yarchoan, P. Meltzer, M. Bittner, J. Trent, and S. Zeichner. 2001. Transcription program of human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus). J. Virol. 75:4843-4853.
44. Pullen, S. S., and P. D. Friesen. 1995. The CAGT motif functions as an initiator element during early transcription of the baculovirus transregulator ie-1. J. Virol. 69:3575-3583.
45. Pullen, S. S., and P. D. Friesen. 1995. Early transcription of the ie-1 transregulator gene of Autographa californica nuclear polyhedrosis virus is regulated by DNA sequences within its 5′ noncoding leader region. J. Virol. 69:156-165.
46. Rapp, J. C., J. A. Wilson, and L. K. Miller. 1998. Nineteen baculovirus open reading frames, including LEF-12, support late gene expression. J. Virol. 72:10197-10206.
47. Smith, G. E., M. D. Summers, and M. J. Fraser. 1983. Production of human beta interferon in insect cells infected with a baculovirus expression vector. Mol. Cell. Biol. 3:2156-2165.
48. Stewart, L. M., M. Hirst, M. Lopez Ferber, A. T. Merryweather, P. J. Cayley, and R. D. Possee. 1991. Construction of an improved baculovirus insecticide containing an insect-specific toxin gene. Nature 352:85-88.
49. Stingley, S. W., J. J. Ramirez, S. A. Aguilar, K. Simmen, R. M. Sandri-Goldin, P. Ghazal, and E. K. Wagner. 2000. Global analysis of herpes simplex virus type 1 transcription using an oligonucleotide-based DNA microarray. J. Virol. 74:9916-9927.
50. Szewczyk, B., L. Hoyos-Carvajal, M. Paluszek, I. Skrzecz, and M. Lobo de Souza. 2005. Baculoviruses-re-emerging biopesticides. Biotechnol. Adv. 24(2):143-160.
51. Talbot, S. J., R. A. Weiss, P. Kellam, and C. Boshoff. 1999. Transcriptional analysis of human herpesvirus-8 open reading frames 71, 72, 73, K14, and 74 in a primary effusion lymphoma cell line. Virology 257:84-94.
52. Taylor, A. L., A. Haze-Filderman, A. Blumenfeld, B. Shay, L. Dafni, E. Rosenfeld, Y. Leiser, E. Fermon, Y. Gruenbaum-Cohen, and D. Deutsch. 2006. High yield of biologically active recombinant human amelogenin using the baculovirus expression system. Protein Expr. Purif. 45:43-53.
53. Tomalski, M. D., J. G. Wu, and L. K. Miller. 1988. The location, sequence, transcription, and regulation of a baculovirus DNA polymerase gene. Virology 167:591-600.
54. Tureci, O., H. Bian, F. O. Nestle, L. Raddrizzani, J. A. Rosinski, A. Tassis, H. Hilton, M. Walstead, U. Sahin, and J. Hammer. 2003. Cascades of transcriptional induction during dendritic cell maturation revealed by genome-wide expression analysis. FASEB J. 17:836-847.