Assessing primary and bacterial production rates in biofilms on pebbles in Ishite Stream, Japan

Microbial Ecology

Volumn 52, Issue 1, 2006, Pages 1-9

  Fukuda, Miwa ^a   Matsuyama, Junya ^a   Katano, Toshiya ^a,b   Nakano, Shin Ichi ^a   Dazzo, Frank ^c  

^a EHIME UNIVERSITY   (Japan)

^b Hanyang University   (South Korea)

^c Michigan State University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASSESSMENT METHOD; AUTOCHTHON; BIOFILM; EXPERIMENTAL STUDY; FOOD WEB; MICROBIAL ACTIVITY; ORGANIC MATTER; PEBBLE; PRIMARY PRODUCTION; SEASONAL VARIATION; STREAM BED;

ASIA; EURASIA; FAR EAST; JAPAN;

BACTERIA (MICROORGANISMS);

CHLOROPHYLL; CHLOROPHYLL A;

ARTICLE; BACTERIUM; BIOFILM; ECOSYSTEM; FOOD CHAIN; GROWTH, DEVELOPMENT AND AGING; JAPAN; METABOLISM; MICROBIOLOGY; RIVER; SEDIMENT;

BACTERIA; BIOFILMS; CHLOROPHYLL; ECOSYSTEM; FOOD CHAIN; GEOLOGIC SEDIMENTS; JAPAN; RIVERS;

EID: 33748441221     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-006-9114-0     Document Type: Article

References (55)

1. Aizaki, M (1980) Changes in standing crop and photosynthetic rate attendant on the film development of periphyton in a shallow eutrophic river. Jpn J Limnol 41: 225-234 (in Japanese)
2. Allan, JD (1995) Physical factors of importance to the biota. In: Allan, JD (Ed.) Stream Ecology. Kluwer Academic Publishers, Dordrecht, pp 45-82
3. Austin, HK, Findlay, EG (1989) Benthic bacterial biomass and production in the Hudson River Estuary. Microb Ecol 18: 105-116
4. Benner, R, Lay, J, K'nees, E, Hodson, RE (1988) Carbon conversion efficiency for bacterial growth on lignocellulose: implications for detritus-based food webs. Limnol Oceanogr 33: 1514-1526
5. Bott, TL (1996) Primary productivity and community respiration. In: Hauer, FR, Lamberti, GA (Eds.) Methods in Stream Ecology. Academic Press, San Diego, pp 533-556
6. Bott, TL, Brock, JT, Cushing, CE, Gregory, SV, King, D, Petersen, RC (1978) A comparison of methods for measuring primary productivity and community respiration in streams. Hydrobiologia 60: 3-12
7. Cole, JJ, Findlay, S, Pace, ML (1988) Bacterial production in fresh and saltwater ecosystems: a cross-system overview. Mar Ecol Prog Ser 43: 1-10
8. Coveney, MF, Cronberg, G, Enell, M, Larsson, K, Olofsson, L (1977) Phytoplankton, zooplankton and bacteria standing crop and relationships in a eutrophic lake. Oikos 29: 5-21
9. Dazzo, FB, Liu, J, Jain, A, Prabhu, A, Reddy, C, Wadekar, M, Peretz, R, Bollempalli, R, Trione, D, Marshall, E, Zurdo, J, Hammoud, H, Wang, J, Li, M, McGarrell, D, Maya-Flores, J, Gantner, S, Dowling, C, Gomaa, AB, Yanni, Y (2004) CMEIAS v3.0 upgrade: Advanced image analysis software to strengthen microscopy-based approaches for understanding microbial ecology. The KBS LTER Site, Long-Term Ecological Research in Row-Crop Agriculture, http://lter.kbs.msu.edu/Meetings/2004ASM/Abstracts/Dazzo.htm
10. Eguchi, M, Nishikawa, T, MacDonald, K, Cavicchioli, R, Gottschal, JC, Kjelleberg, S (1996) Responses to stress and nutrient availability by the marine ultramicrobacterium Sphingomonas sp. strain RB2256. Appl Environ Microbiol 62: 1287-1294
11. Findlay, S, Meyer, JL, Risley, R (1986) Benthic bacterial biomass and production in two blackwater rivers. Can J Fish Aquat Sci 43: 1271-1276
12. Fischer, H, Pusch, M (2001) Comparison of bacterial production in sediments, epiphyton and the pelagic zone of a lowland river. Freshw Biol 46: 1335-1348
13. Fukuda, M, Ashida, A, Tomaru, Y, Nakano, S (2004) An improved method for collecting heterotrophic microorganisms inhabiting on pebbles in streams. Limnology 5: 41-46
14. Hagström, A, Larsson, U, Horstedt, P, Normark, S (1979) Frequency of dividing cells, a new approach to the determination of bacterial growth rates in aquatic environments. Appl Environ Microbiol 37: 805-812
15. Hanson, RB, Shafer, D, Ryan, T, Pope, DH, Lowery, HK (1983) Bacterioplankton in Antarctic ocean waters during late Austral winter: abundance, frequency of dividing cells, and estimates of production. Appl Environ Microbiol 45: 1622-1632
16. Hirotani, H, Matsui, Y, Sese, C, Kagawa, H (1992) Positive correlations between catchment areas and densities of bacteria in the upper reaches of a river. Water Sci Technol 26: 1965-1972
17. Hirotani, H, Sese, C, Kagawa, H (1999) Correlations of Aeromonas hydrophila with indicator bacteria of water quality and environmental factors in a mountain stream. Water Environ Res 71: 132-138
18. Hori, M, Morikawa, K (2000) Studies on the dynamics of the protozoa in epilithon at Nishiaokidaira in the Akigawa River. Jpn J Limnol 61: 223-231 (in Japanese)
19. Hudson, JJ, Roff, JC, Burnison, BK (1992) Bacterial productivity in forested and open streams in Southern Ontario. Can J Fish Aquat Sci 49: 2412-2422
20. Kaplan, LA, Bott, TL (1989) Diurnal fluctuations in bacterial activity on streambed substrata during vernal algal blooms: effects of temperature, water chemistry, and habitat. Limnol Oceanogr 34: 718-733
21. Kirchman, D (1983) The production of bacteria attached to particles suspended in a freshwater pond. Limnol Oceanogr 28: 858-872
22. Kjelleberg, S, Albertson, N, Flardh, K, Holmquist, L, Jouper-Jaan, A, Marouga, R, Ostling, J, Svenblad, B, Weichart, D (1993) How do non-differentiating bacteria adapt to starvation? Antonie van Leeuwenhoek 63: 333-341
23. Kobayashi, T (1950) Japan local geological journal. Shikoku, Asakura Publications, Japan, pp 96-98 (in Japanese)
24. Lee, S, Fuhrman, JA (1987) Relationships between biovolume and biomass of naturally derived marine bacterioplankton. Appl Environ Microbiol 53: 1298-1303
25. Liu, J, Dazzo, FB, Glagoleva, O, Yu, B, Jain, AK (2001) CMEIAS: A computer-aided system for the image analysis of bacterial morphotypes in microbial communities. Microb Ecol 41: 173-194. http://cme.msu.edu/cmeias/〉
26. Lock, MA, Wallace, RR, Costerton, JW, Ventullo, RM, Charlton, SE (1984) River epilithon: toward a structural-functional model. Oikos 42: 10-22
27. Marxsen, J (1999) Importance of bacterial production in the carbon flow of an upland stream, the Breitenbach. Arch Hydrobiol Spec Issues Adv Limnol 54: 135-145
28. Matsuyama local weather station (2004) Weather data in Ehime Prefecture. http://www.osaka-jma.go.jp/matuyama/matuyama.htm
29. Meyer, JL (1988) Benthic bacterial biomass and production in a blackwater river. Verh Int Verein Limnol 23: 1832-1838
30. Moran, R, Porath, D (1980) Chlorophyll determination in intact tissues using N,N-dimethylformamide. Plant Physiol 65: 478-479
31. Nagata, T (1987) Production rate of planktonic bacteria in the North Basin of Lake Biwa, Japan. Appl Environ Microbiol 53: 2872-2882
32. Nagata, T, Watanabe, Y (1990) Carbon- and nitrogen-to-volume ratios of bacterioplankton grown under different nutritional conditions. Appl Environ Microbiol 56: 1303-1309
33. Nakano, S (1992) Changes in bacterioplankton production and dominant algal species in the North Basin of Lake Biwa. Jpn J Limnol 53: 145-149
34. Nakano, A, Ban, S (2003) Microbial communities in oligotrophic Lake Toya, Japan. Limnology 4: 19-24
35. Newell, SY, Christian, RR (1981) Frequency of dividing cells as an estimator of bacterial productivity. Appl Environ Microbiol 42: 23-31
36. Paul, EA, Harris, D, Klug, M, Ruess, R (1999) The determination of microbial biomass. In: Robertson, GP, Bledsoe, CS, Coleman, DC, Sollins, P (Eds.) Standard Soil Methods for Long-Term Ecological Research. Oxford University Press, New York, pp 291-317
37. Riemann, B, Sondergaard, M, Schierup, HH, Bosselmann, S, Christensen, G, Hansen, J, Nielsen, B (1982) Carbon metabolism during a spring diatom bloom in the eutrophic Lake Mosso. Int Rev Ges Hydrobiol 67: 145-185
38. Rier, ST, Stevenson, RJ (2002) Effects of light, dissolved organic carbon, and inorganic nutrients on the relationship between algae and heterotrophic bacteria in stream periphyton. Hydrobiologia 489: 179-184
39. 3H]-thymidine? In: Jones, JG (Ed.) Advances in Microbial Ecology. Plenum Press, New York, pp 371-425
40. Romani, AM, Sabater, S (2001) Structure and activity of rock and sand biofilms in a Mediterranean stream. Ecology 82: 3232-3245
41. Rosenfeld, JS, Hudson, JJ (1997) Primary production, bacterial production, and invertebrate biomass in pools and riffles in southern Ontario streams. Arch Hydrobiol 139: 301-316
42. Seitzinger, SP, Hartnett, H, Lauck, R, Mazurek, M, Minegishi, T, Spyres, G, Styles, R (2005) Molecular-level chemical characterization and bioavailability of dissolved organic matter in stream water using electrospray-ionization mass spectrometry. Limnol Oceanogr 50: 1-12
43. Silvester, NR, Sleigh, MA (1985) The forces on microorganisms at surfaces in flowing water. Freshw Biol 15: 433-448
44. Someya, T (1995) Three-dimensional observation of soil bacteria in organic debris with a confocal laser scanning microscope. Soil Microorganisms 46: 61-69
45. Steinman, AD, Lamberti, GA (1996) Biomass and pigments of benthic algae. In: Hauer FR, Lamberti, GA (Eds.) Methods in Stream Ecology. Academic Press, San Diego, pp 295-313
46. Strickland, JD, Parsons TR (1972) A Practical Handbook of Seawater Analysis, 2nd ed. Fisheries Research Board of Canada Ottawa, Canada
47. Suehiro, S, Tezuka, Y (1981) Seasonal change in ciliate populations in the bottom sediment of a polluted river. Jpn J Limnol 42: 1-7
48. Tanaka, N, Nakanishi, M, Kadota, H (1974) The excretion of photosynthetic product by natural phytoplankton population in Lake Biwa. Jpn J Limnol 35: 91-98
49. Tanaka, N, Nakanishi, M, Kadota, H (1975) Seasonal variation of glycollate-utilizing bacteria in the water column of Lake Biwa. Bull Jpn Soc Sci Fish 41: 1129-1134
50. Torella, F, Morita, RY (1986) Microcultural study of bacterial size changes and microcolony and ultramicrocolony formation by heterotrophic bacteria in seawater. Appl Environ Microbiol 41: 518-527
51. Vadstein, O, Harkjerr, BO, Jensen, A, Olsen, Y, Reinertsen, H (1989) Cycling of organic carbon in the photic zone of a eutrophic lake with special reference to the heterotrophic bacteria. Limnol Oceanogr 34: 840-855
52. Vogel, S (1994) Life in Moving Fluids. Princeton University Press, Princeton, NJ
53. Watanabe, Y (2000) Determination of photosynthetic productivity in riverine environments. In: The Tama River Ecological Research Group (Ed.) Comprehensive Study of The Tama River, pp 33-36
54. Wetzel, RG, Likens, GE (1990) Primary productivity of phytoplankton In: Wetzel, RG, Likens, GE (Eds.) Limnological Analysis. Springer-Verlag, New York, pp 207-226
55. White, PA, Kalff, J, Rasmussen, JB, Gasol, JM (1991) The effect of temperature and algal biomass on bacterial production and specific growth rate in freshwater and marine habitats. Microb Ecol 21: 99-118