-
1
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary dna microarray
-
Schena M., Shalon D., and Brown R. Quantitative monitoring of gene expression patterns with a complementary dna microarray. Science 270 (1995) 467-470
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Brown, R.3
-
2
-
-
0003614273
-
-
The MIT Press, Cambridge
-
Spirtes P., Glymour C., and Scheines R. Causation, Prediction, and Search (2000), The MIT Press, Cambridge
-
(2000)
Causation, Prediction, and Search
-
-
Spirtes, P.1
Glymour, C.2
Scheines, R.3
-
4
-
-
0004047518
-
-
Oxford University Press, Oxford
-
Lauritzen S. Graphical Models (1996), Oxford University Press, Oxford
-
(1996)
Graphical Models
-
-
Lauritzen, S.1
-
7
-
-
33748436877
-
-
Z. Szallasi, Genetic network analysis in light of massively parallel biological data acquisitions, in: Proceedings of Pacific Symposium on Biocomputing, 1999, pp. 234-243.
-
-
-
-
8
-
-
0033691754
-
-
N. Friedman, M. Linial, I. Nachman, D. Peer, Using bayesian networks to analyze expression data, in: Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000.
-
-
-
-
9
-
-
33748430271
-
-
K. Murphy, S. Mian, Modeling gene expression data using dynamic bayesian networks, Technical Report, CS Department, University of California at Berkeley, 1999.
-
-
-
-
10
-
-
0037941585
-
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
-
Segal E., Shapira M., Regev A., Peer D., Botstein D., Koller D., and Friedman N. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat. Gene. 34 (2003) 166-176
-
(2003)
Nat. Gene.
, vol.34
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Peer, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
12
-
-
0032728081
-
Clustering gene expression patterns
-
Ben-Dor A., Shamir R., and Yakhini Z. Clustering gene expression patterns. J. Comput. Biol. 6 3/4 (1999) 281-297
-
(1999)
J. Comput. Biol.
, vol.6
, Issue.3-4
, pp. 281-297
-
-
Ben-Dor, A.1
Shamir, R.2
Yakhini, Z.3
-
13
-
-
0034515528
-
A clustering algorithm based on graph connectivity
-
Hartuv E., and Shamir R. A clustering algorithm based on graph connectivity. Inf. Process. Lett. 76 4-6 (2000) 175-181
-
(2000)
Inf. Process. Lett.
, vol.76
, Issue.4-6
, pp. 175-181
-
-
Hartuv, E.1
Shamir, R.2
-
14
-
-
33748426415
-
-
R. Shamir, R. Shamir, Click: a clustering algorithm for gene expression analysis, in: Proceedings of the Eighth International Conference on Intelligent System for Molecular Biology (ISMB00), 2000.
-
-
-
-
15
-
-
0035999974
-
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees
-
Xu Y., Olman V., and Xu D. Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics 18 4 (2002) 536-545
-
(2002)
Bioinformatics
, vol.18
, Issue.4
, pp. 536-545
-
-
Xu, Y.1
Olman, V.2
Xu, D.3
-
16
-
-
0037245822
-
Mining gene expression databases for association rules
-
Creighton C., and Hanash S. Mining gene expression databases for association rules. Bioinformatics 19-1 (2003) 79-86
-
(2003)
Bioinformatics
, vol.19-1
, pp. 79-86
-
-
Creighton, C.1
Hanash, S.2
-
19
-
-
26944501359
-
Graphical modeling based gene interaction analysis for microarray data
-
Wu X., Ye Y., and Zhang L. Graphical modeling based gene interaction analysis for microarray data. KDD Explor. 5 2 (2003) 91-100
-
(2003)
KDD Explor.
, vol.5
, Issue.2
, pp. 91-100
-
-
Wu, X.1
Ye, Y.2
Zhang, L.3
-
20
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: a literature review
-
Jong H.D. Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol. 9 1 (2002) 67-103
-
(2002)
J. Comput. Biol.
, vol.9
, Issue.1
, pp. 67-103
-
-
Jong, H.D.1
-
21
-
-
0034570871
-
Correspondence analysis of genes and tissue types and finding genetic links from microarray data
-
Kishino H., and Waddell P.J. Correspondence analysis of genes and tissue types and finding genetic links from microarray data. Genome Inf. 11 (2000) 83-95
-
(2000)
Genome Inf.
, vol.11
, pp. 83-95
-
-
Kishino, H.1
Waddell, P.J.2
-
22
-
-
0034575477
-
Cluster inference methods and graphical models evaluated on nci60 microarray gene expression data
-
Waddell P.J., and Kishino H. Cluster inference methods and graphical models evaluated on nci60 microarray gene expression data. Genome Inf. 11 (2000) 129-140
-
(2000)
Genome Inf.
, vol.11
, pp. 129-140
-
-
Waddell, P.J.1
Kishino, H.2
-
24
-
-
0033518256
-
Synexpression groups in eukaryotes
-
Niehrs C., and Pollet N. Synexpression groups in eukaryotes. Nature 402 (1999) 483-487
-
(1999)
Nature
, vol.402
, pp. 483-487
-
-
Niehrs, C.1
Pollet, N.2
-
25
-
-
0035279936
-
Towards an understanding of complex protein networks
-
Tucker C.L., Gera J.F., and Uetz P. Towards an understanding of complex protein networks. Trends Cell Biol. 11 (2001) 102-106
-
(2001)
Trends Cell Biol.
, vol.11
, pp. 102-106
-
-
Tucker, C.L.1
Gera, J.F.2
Uetz, P.3
-
26
-
-
0000455611
-
Decomposition by clique separators
-
Tarjan R. Decomposition by clique separators. Discrete Math. 55 (1985) 221-232
-
(1985)
Discrete Math.
, vol.55
, pp. 221-232
-
-
Tarjan, R.1
-
27
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
Hughes T., Marton M., Jones A.R., Roberts C., Stoughton R., Armour C., Bennett H., Coffey E., Dai H., He Y., Kidd M.J., and King A.M. Functional discovery via a compendium of expression profiles. Cell 102 (2000) 109-126
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.1
Marton, M.2
Jones, A.R.3
Roberts, C.4
Stoughton, R.5
Armour, C.6
Bennett, H.7
Coffey, E.8
Dai, H.9
He, Y.10
Kidd, M.J.11
King, A.M.12
-
28
-
-
20744456475
-
Correlation between the gene expression profiles and the protein-protein interactions within and across different genomes
-
Bhardwaj N., and Lu H. Correlation between the gene expression profiles and the protein-protein interactions within and across different genomes. Bioinformatics 21 (2005) 2730-2738
-
(2005)
Bioinformatics
, vol.21
, pp. 2730-2738
-
-
Bhardwaj, N.1
Lu, H.2
-
29
-
-
33748416103
-
-
J. Ellson, S. North, Graph visualization project (graphviz) 〈http://www.graphviz.org〉.
-
-
-
-
30
-
-
33748419556
-
-
B. Spitzak, et al., The fast light toolkit(fltk) 〈http://www.fltk.org〉.
-
-
-
-
31
-
-
33748434530
-
-
C. Borgelt, Association rule induction 〈http://fuzzy.cs.uni-magdeburg.de/∼borgelt/software.html〉.
-
-
-
-
32
-
-
33748436742
-
-
M. Eisen, Cluster analysis and visualization 〈http://rana.lbl.gov〉.
-
-
-
-
33
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin A., Bosche M., Krause R., et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415 (2002) 141-147
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.1
Bosche, M.2
Krause, R.3
-
34
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia Coli
-
Butland G., Peregrin-Alvarez J.M., Li J., et al. Interaction network containing conserved and essential protein complexes in Escherichia Coli. Nature 433 (2005) 531-537
-
(2005)
Nature
, vol.433
, pp. 531-537
-
-
Butland, G.1
Peregrin-Alvarez, J.M.2
Li, J.3
-
35
-
-
33748435110
-
-
I. Tsamardinos, C.A. Aliferis, A. Statnikov, L.E. Brown, Scaling-up bayesian network learning to thousands of variables using local learning techniques, Technical Report, DSL TR-03-02, Vanderbilt University, March 2003.
-
-
-
-
36
-
-
0024357814
-
Arginine restriction induced by delta-n-(phosphonacetyl)-l-ornithine signals increased expression of his3, trp5, cpa1, and cpa2 in saccharomyces cerevisiae
-
Kinney D., and Lusty C. Arginine restriction induced by delta-n-(phosphonacetyl)-l-ornithine signals increased expression of his3, trp5, cpa1, and cpa2 in saccharomyces cerevisiae. Mol. Cell Biol. 9 11 (1989) 4882-4888
-
(1989)
Mol. Cell Biol.
, vol.9
, Issue.11
, pp. 4882-4888
-
-
Kinney, D.1
Lusty, C.2
-
37
-
-
0002460150
-
The ALARM monitoring system: a case study with two probabilistic inference techniques for belief networks
-
Springer, Berlin
-
Beinlich I., Suermondt G., Chavez R., and Cooper G. The ALARM monitoring system: a case study with two probabilistic inference techniques for belief networks. Proceedings of the Second European Conference on AI and Medicine vol. 38 (1989), Springer, Berlin 247-256
-
(1989)
Proceedings of the Second European Conference on AI and Medicine
, vol.38
, pp. 247-256
-
-
Beinlich, I.1
Suermondt, G.2
Chavez, R.3
Cooper, G.4
-
38
-
-
33748438303
-
-
N. Friedman, G. Elidan, Libb, a tool for learning bayesian network 〈http://www.cs.huji.ac.il/labs/compbio/LibB〉.
-
-
-
|