Discriminating between effects of metals and natural variables in terrestrial bacterial communities

Applied Soil Ecology

Volumn 34, Issue 2-3, 2006, Pages 103-113

  Boivin, M E Y ^a,b   Greve, G D ^a,b   Kools, S A E ^b   van der Wurff, A W G ^c   Leeflang, P ^a   Smit, E ^a   Breure, A M ^a   Rutgers, M ^a   van Straalen, N M ^b  

^a NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^b VU UNIVERSITY AMSTERDAM   (Netherlands)

^c WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Bacterial communities; Community level physiological profile; Denaturing gradient gel electrophoresis; Metals; Pollution induced community tolerance

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 33748417845     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2006.03.009     Document Type: Article

References (32)

1. Almås A.R., Bakken L.R., and Mulder J. Changes in tolerance of soil microbial communities in Zn and Cd contaminated soils. Soil Biol. Biochem. 36 (2004) 805-813
2. Bååth E., Dìaz-Raviña M., Fröstegard A., and Campbell C.D. Effect of metal-rich sludge amendments on the soil microbial community. Appl. Environ. Microbiol. 64 (1998) 238-245
3. Bååth E., and Anderson T.H. Comparison of soil fungal/bacterial ratios in a pH gradient using physiological and PFLA-based techniques. Soil Biol. Biochem. 35 (2003) 955-963
4. Blanck H., Wängberg S.A., and Molander S. Pollution-induced community tolerance. In: Cairns J.J., and Pratt J.R. (Eds). A New Ecotoxicological Tool vol. 988 (1988), ASTM STP 219-230
5. Bloem J., Lebbink G., Zwart K.B., Bouwman L.A., Burgers S.L.G.E., Vos de J.A., and Ruiter de P.C. Dynamics of microorganisms, microbivores and nitrogen mineralization in winter wheat fields under conventional and integrated management. Agric. Ecosyst. Environ. 51 (1994) 129-143
6. Bloem J., de Ruiter P.C., and Bouwman L.A. Food webs and nutrient cycling in agro-ecosystems. In: Van Elsas J.D., Trevors J.T., and Wellinton E. (Eds). Modern Soil Microbiology (1997), Marcel Dekker, New York 245-278
7. Boivin M.E.Y., Breure A.M., Posthuma L., and Rutgers M. Determination of field effects of contaminants-significance of pollution-induced community tolerance. Hum. Ecol. Risk Asses. 8 (2002) 1035-1055
8. Boivin M.E.Y., Massieux B., Breure A.M., Van Den Ende F.P., Greve G.D., Rutgers M., and Admiraal W. Effects of copper and temperature on structural and functional traits of aquatic bacterial communities. Aquat. Toxicol. 71 (2005) 345-356
9. Bosveld, A.T.C., Kolk, T.C., Bodt, J.M., Rutgers, M., 2000. Ecologische risico's van bodemverontreinigingen in toemaakdek in de gemeente De Ronde Venen. Report, vol. 151. Wageningen, Alterra, pp. 27-31 (in Dutch).
10. Bouwman L.A., Bloem J., van den Boogert P.H.J.F., Bremer F., Hoenderboom G.H.J., and de Ruiter P.C. Short-term and long-term effects of bacterivorous nematodes and nematophagous fungi on carbon and nitrogen mineralization in microcosms. Biol. Fertil. Soils 17 (1994) 249-256
11. Brookes P.C., and Mcgrath S.P. Effects of metal toxicity on the size of the soil microbial biomass. J. Soil Sci. 35 (1984) 341-346
12. Davis M.R.H., Zhao F., and McGrath S.P. Pollution-induced community tolerance of soil microbes in response to a zinc gradient. Environ. Toxicol. Chem. 23 (2004) 2665-2672
13. Dìaz-Raviña M., and Bååth E. Influence of different temperatures on metal tolerance measurements and growth response in bacterial communities from unpolluted and polluted soils. Biol. Fertil. Soils 21 (1996) 233-238
14. Doelman P., Jansen E., Michels M., and van Til M. Effects of heavy metals in soil on microbial diversity and activity as shown by the sensitivity-resistance index, an ecologically relevant parameter. Biol. Fertil. Soils 17 (1994) 177-184
15. Gong P., Gasparrini P., Rho D., Hawari J., Thiboutot S., Ampleman G., and Sunahara G.I. An in situ respirometric technique to measure pollution-induced microbial community tolerance in soils contaminated with 2,4,6-trinitrotoluene. Ecotoxicol. Environ. Saf. 47 (2000) 96-103
16. Jordan M.J., and Lechevalier M.P. Effects of zinc smelter emissions on forest soil microflora. Can. J. Microbiol. 21 (1975) 1855-1865
17. Kandeler E., Tscherko D., Bruce K.D., Stemmer M., Hobbs P.J., Bardgett R.D., and Amelung W. Structure and function of the soil microbial community in microhabitats of a heavy metal polluted soil. Biol. Fertil. Soils 32 (2000) 390-400
18. Kelly J.J., and Tate R.L. Use of Biolog for the analysis of microbial communities from zinc-contaminated soils. J. Environ. Qual. 27 (1998) 600-608
19. Konert M., and van den Berghe J. Comparison of laser grain size analysis with pipette and sieve analysis: a solution for the underestimation of the clay fraction. Sedimentology 44 (1997) 523-535
20. 3H]leucine incorporation. Soil Biol. Biochem. 25 (1993) 943-950
21. Muyzer G., Dewaal E.C., and Uitterlinden A.G. Profiling of complex microbial-populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal-RNA. Appl. Environ. Microbiol. 59 (1993) 695-700
22. Nübel U., Engelen B., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., and Backhaus H. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178 (1996) 5636-5643
23. Peeters E.T.H.M., Gylstra R., and Vos J.H. Benthic macroinvertebrate community structure in relation to food and environmental variables. Hydrobiologia 519 (2004) 103-115
24. Posthuma L., Traas T.P., de Zwart D., and Suter II G.W. Conceptual and technical outlook on species sensitivity distributions. In: Posthuma L., Suter II G.W.I., and Traas T.P. (Eds). Species sensitivity distributions in ecotoxicology (2002), Lewis, CRC Press, Boca Raton 475-508
25. Rutgers M., Breure A.M., and Insam H. Substrate utilization in Biolog tm plates for analysis of CLPP. In: Bloem J., Benedetti A., and Hopkins D.W. (Eds). Microbiological Methods for Assessing Soil Quality (2006), CABI, Wallingford, Oxfordshire, UK 212-227
26. Schouten, A.J., Brussaard, L., de Ruiter, P.C., Siepel, H., van Straalen, N.M., 1997. An indicator for life support functions in relation to soil biodiversity. RIVM rapport 712910005, Bilthoven (in Dutch).
27. Swartjes F.A. Risk-based assessment of soil and groundwater quality in The Netherlands: standards and remediation urgency. Risk Anal. 19 (1999) 1235-1249
28. Ter Braak C.J.F. Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis. Ecology (1986) 1167-1179
29. Ter Braak, C.J.F., Smilauer, P., 1998. Canoco reference manual and user's guide to Canoco for Windows: software for canonical community ordination (version 4). Centre for Biometry, Wageningen.
30. Traas T.P., Van de Meent D., Posthuma L., Hamers T.H.M., Kater B.J., Zwart D., and Aldenberg T. The potentially affected fraction as a measure of ecological risk. In: Posthuma L., Suter II G.W.I., and Traas T.P. (Eds). Species Sensitivity Distributions in Ecotoxicology (2002), Lewis, CRC Press, Boca Raton 315-344
31. van Beelen P., Wouterse M., Posthuma L., and Rutgers M. Location-specific ecotoxicological risk assessment of metal-polluted soils. Environ. Toxicol. Chem. 23 (2004) 2769-2779
32. Winding A., Hund-Rindke K., and Rutgers M. The use of microorganisms in ecological soil classification and assessment concepts. Ecotoxicol. Environ. Saf. 62 (2005) 230-248