Analysis of mercuric reductase (merA) gene diversity in an anaerobic mercury-contaminated sediment enrichment

Environmental Microbiology

Volumn 8, Issue 10, 2006, Pages 1746-1752

  Ní Chadhain, Sinéad M ^a   Schaefer, Jeffra K ^a,b   Crane, Sharron ^a   Zylstra, Gerben J ^a   Barkay, Tamar ^a  

^a RUTGERS UNIVERSITY   (United States)

^b PRINCETON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; MERCURY; MERCURY (II) REDUCTASE; OXIDOREDUCTASE;

ANAEROBIC GROWTH; ARTICLE; CHEMISTRY; DNA SEQUENCE; ENZYMOLOGY; GENETIC VARIABILITY; GENETICS; GRAM NEGATIVE BACTERIUM; METABOLISM; MICROBIOLOGY; PHYLOGENY; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SEDIMENT; UNITED STATES; WATER POLLUTANT;

ANAEROBIOSIS; DNA, BACTERIAL; GEOLOGIC SEDIMENTS; GRAM-NEGATIVE BACTERIA; MERCURY; NEW JERSEY; OXIDOREDUCTASES; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS); WATER MICROBIOLOGY; WATER POLLUTANTS, CHEMICAL;

NEGIBACTERIA;

EID: 33748317824     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2006.01114.x     Document Type: Article

References (39)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
2. +2 stress. Appl Environ Microbiol 53: 2725-2732.
3. Barkay, T., and Wagner-Döbler, I. (2005) Microbial transformations of mercury: potentials, challenges, and achievements in controlling mercury toxicity in the environment. Adv Appl Microbiol 57: 1-52.
4. Barkay, T., Miller, S.M., and Summers, A.O. (2003) Bacterial mercury resistance from atoms to ecosystems. FEMS Microbiol Rev 27: 355-384.
5. Benoit, J.M., Gilmour, C.C., Heyes, A., Mason, R.P., and Miller, C.L. (2003) Geochemical and biological controls over methylmercury production and degradation in aquatic ecosystems. In Biogeochemistry of Environmentally Important Trace Elements. Chai, Y. and Braids, D.C. (eds). Washington, DC: American Chemical Society, pp. 262-297.
6. Chao, A. (1984) Non-parametric estimation of the number of classes in a population. Scand J Stat 11: 265-270.
7. Chao, A., and Lee, S.M. (1992) Estimating the number of classes via sample coverage. J Am Stat Assoc 87: 210-217.
8. Compeau, G.C., and Bartha, R. (1985) Sulfate-reducing bacteria: principal methylators of mercury in anoxic estuarine sediment. Appl Environ Microbiol 50: 498-502.
9. Dronen, A.K., Torsvik, V., Goksoyr, J., and Top, E.M. (1998) Effect of mercury addition on plasmid incidence and gene mobilizing capacity in bulk soil. FEMS Microbiol Ecol 27: 381-394.
10. Felsenstein, J. (2004) PHYLIP (Phylogeny Inference Package), version 3.6.: Department of Genome Sciences, University of Washington, Seattle, Distributed by the author.
11. Felske, A.D.M., Fehr, W., Pauling, B.V., von Canstein, H., and Wagner-D̈bler, I. (2003) Functional profiling of mercuric reductase (mer A) genes in biofilm communities of a technical scale biocatalyzer. BMC Microbiol 3: 22.
12. Gilmour, C.C., Henry, E.A., and Mitchell, R. (1992) Sulfate stimulation of mercury methylation in freshwater sediments. Environ Sci Technol 26: 2281-2287.
13. Griffin, H.G., Foster, T.J., Silver, S., and Misra, T.K. (1987) Cloning and DNA sequence of the mercuric- and organomercurial- resistance determinants of plasmid pDU1358. Proc Natl Acad Sci USA 84: 3112-3116.
14. Hughes, J.B., Hellmann, J.J., Ricketts, T.H., and Bohannan, B.J.M. (2001) Counting the uncountable: statistical approaches to estimating microbial diversity. Appl Environ Microbiol 67: 4399-4406.
15. Inoue, C., Sugawara, K., Shiratori, T., Kusano, T., and Kitagawa, Y. (1989) Nucleotide sequence of the Thiobacillus ferrooxidans chromosomal gene encoding mercuric reductase. Gene 84: 47-54.
16. Kholodii, G.Y., Yurieva, O.V., Gorlenko, Z.M., Mindlin, S.Z., Bass, I.A., Lomovskaya, O.L., et al. (1997) Tn5041: a chimeric mercury resistance transposon closely related to the toluene degradative transposon Tn4651. Microbiology 143: 2549-2556.
17. Kiyono, M., Omura, T., Inuzuka, M., Fujimori, H., and Hidemitsu, P.H. (1997) Nucleotide sequence and expression of the organomercurial-resistance determinants from a Pseudomonas K-62 plasmid pMR26. Gene 189: 151-157.
18. Liebert, C.A., Wireman, J., Smith, T., and Summers, A.O. (1997) Phylogeny of mercury resistance (mer) operons of gram-negative bacteria isolated from the fecal flora of primates. Appl Environ Microbiol 63: 1066-1076.
19. Lipsky, D.S., and Koepp, S.J. (1986) Mercury levels in organisms in proximity to an old chemical site (Berry's Creek, Hackensack Meadowlands, New Jersey, USA). Mar Pollut Bull 17: 219-224.
20. Müller, A.K., Westergaard, K., Christensen, S., and Sorensen, S.J. (2001) The effect of long-term mercury pollution on the soil microbial community. FEMS Microbiol Ecol 36: 11-19.
21. Nazaret, S., Jeffrey, W.H., Saouter, E., Vonhaven, R., and Barkay, T. (1994) merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization. Appl Environ Microbiol 60: 4059-4065.
22. Osborn, A.M., Bruce, K.D., Ritchie, D.A., and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology 142: 337-345.
23. Page, R.D.M. (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358.
24. Rasmussen, L.D., and Sørensen, S.J. (1998) The effect of longterm exposure to mercury on the bacterial community in marine sediment. Curr Microbiol 36: 291-297.
25. Rasmussen, L.D., and Sørensen, S.J. (2001) Effects of mercury contamination on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil. FEMS Microbiol Ecol 36: 1-9.
26. Rudrick, J.T., Bawdon, R.E., and Guss, S.P. (1985) Determination of mercury and organomercurial resistance in obligate anaerobic bacteria. Can J Microbiol 31: 276-281.
27. Schaefer, J.K., Letowski, J., and Barkay, T. (2002) mermediated resistance and volatilization of Hg(II) under anaerobic conditions. Geomicrobiol J 19: 87-102.
28. Schaefer, J.K., Yagi, J., Reinfelder, J.R., Cardona, T., Ellickson, K.M., Tel-Or, S., and Barkay, T. (2004) Role of the bacterial organomercury lyase (MerB) in controlling methylmercury accumulation in mercury-contaminated natural waters. Environ Sci Technol 38: 4304-4311.
29. Schelert, J., Dixit, V., Hoang, V., Simbahan, J., Drozda, M., and Blum, P. (2004) Occurrence and characterization of mercury resistance in the hyperthermophilic archaeon Sulfolobus solfataricus by use of gene disruption. J Bacteriol 186: 427-437.
30. Schloss, P.D., and Handelsman, J. (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
31. Siciliano, S.D., O'Driscoll, N.J., and Lean, D.R.S. (2002) Microbial reduction and oxidation of mercury in freshwater lakes. Environ Sci Technol 36: 3064-3068.
32. Smit, E., Wolters, A., and van Elsas, J.D. (1998) Self-transmissible mercury resistance plasmids with genemobilizing capacity in soil bacterial populations: influence of wheat roots and mercury addition. Appl Environ Microbiol 64: 1210-1219.
33. Swofford, D.L. (1998) PAUP*. Phylogenetic Inference Using Parsimony (*and other methods). Version 4. Sunderland, MA, USA: Sinauer Associates.
34. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
35. Venkatesan, M.M., Goldberg, M.B., Rose, D.J., Grotbeck, E.J., Burland, V., and Blattner, F.R. (2001) Complete DNA sequence and analysis of the large virulence plasmid of Shigella flexneri. Infect Immun 69: 3271-3285.
36. Venter, J.C., Remington, K., Heidelberg, J.F., Halpern, A.L., Rusch, D., Eisen, J.A., et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
37. Vetriani, C., Chew, Y.S., Miller, S.M., Yagi, J., Coombs, J., Lutz, R.A., and Barkay, T. (2005) Mercury adaptation among bacteria from a deep-sea hydrothermal vent. Appl Environ Microbiol 71: 220-226.
38. Weast, R.C. (1973) Handbook of Chemistry and Physics. Cleveland, OH: CRC Press.
39. Weber, J.H., Evans, R., Jones, S.H., and Hines, M.E. (1998) Conversion of mercury(II) into mercury(0), monomethylmercury cation, and dimethylmercury in saltmarsh sediment slurries. Chemosphere 36: 1669-1687.