메뉴 건너뛰기




Volumn 349, Issue 1, 2006, Pages 69-78

mRNA secondary structure at start AUG codon is a key limiting factor for human protein expression in Escherichia coli

Author keywords

Codon optimization; E. coli; Interleukin 10; RNA stability; Secondary structure; Start codon

Indexed keywords

INTERLEUKIN 10;

EID: 33748316617     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2006.07.209     Document Type: Article
Times cited : (44)

References (30)
  • 1
    • 0035169206 scopus 로고    scopus 로고
    • Understanding the art of producing protein and nonprotein molecules in Escherichia coli
    • Balbas P. Understanding the art of producing protein and nonprotein molecules in Escherichia coli. Mol. Biotechnol. 19 (2001) 251-267
    • (2001) Mol. Biotechnol. , vol.19 , pp. 251-267
    • Balbas, P.1
  • 2
    • 0032007853 scopus 로고    scopus 로고
    • Strategies for optimizing heterologous protein expression in Escherichia coli
    • Hannig G., and Makrides S.C. Strategies for optimizing heterologous protein expression in Escherichia coli. Trends Biotechnol. 16 (1998) 54-60
    • (1998) Trends Biotechnol. , vol.16 , pp. 54-60
    • Hannig, G.1    Makrides, S.C.2
  • 3
    • 0037783314 scopus 로고    scopus 로고
    • Translational repression mechanisms in prokaryotes
    • Schlax P.J., and Worhunsky D.J. Translational repression mechanisms in prokaryotes. Mol. Microbiol. 48 (2003) 1157-1169
    • (2003) Mol. Microbiol. , vol.48 , pp. 1157-1169
    • Schlax, P.J.1    Worhunsky, D.J.2
  • 4
    • 0028804911 scopus 로고
    • Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli
    • Kane J.F. Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr. Opin. Biotechnol. 6 (1995) 494-500
    • (1995) Curr. Opin. Biotechnol. , vol.6 , pp. 494-500
    • Kane, J.F.1
  • 5
    • 18844362113 scopus 로고    scopus 로고
    • Strategies for efficient production of heterologous proteins in Escherichia coli
    • Jana S., and Deb J.K. Strategies for efficient production of heterologous proteins in Escherichia coli. Appl. Microbiol. Biotechnol. 67 (2005) 289-298
    • (2005) Appl. Microbiol. Biotechnol. , vol.67 , pp. 289-298
    • Jana, S.1    Deb, J.K.2
  • 6
    • 0347877254 scopus 로고    scopus 로고
    • Expression of synthetic human interleukin-10 gene and its mutant variants in Escherichia coli cells
    • Ptitsyn L.R., Al'tman I.B., and Gurov M.V. Expression of synthetic human interleukin-10 gene and its mutant variants in Escherichia coli cells. Bioorg. Khim. 24 (1998) 48-57
    • (1998) Bioorg. Khim. , vol.24 , pp. 48-57
    • Ptitsyn, L.R.1    Al'tman, I.B.2    Gurov, M.V.3
  • 7
    • 24944495338 scopus 로고    scopus 로고
    • Codon and amino Acid usage in two major human pathogens of genus bartonella-optimization between replicational-transcriptional selection, translational control and cost minimization
    • Das S., Paul S., Chatterjee S., and Dutta C. Codon and amino Acid usage in two major human pathogens of genus bartonella-optimization between replicational-transcriptional selection, translational control and cost minimization. DNA Res. 12 (2005) 91-102
    • (2005) DNA Res. , vol.12 , pp. 91-102
    • Das, S.1    Paul, S.2    Chatterjee, S.3    Dutta, C.4
  • 8
    • 0034613064 scopus 로고    scopus 로고
    • Expression of different coding sequences in cell-free bacterial and eukaryotic systems indicates translational pausing on Escherichia coli ribosomes
    • Ramachandiran V., Kramer G., and Hardesty B. Expression of different coding sequences in cell-free bacterial and eukaryotic systems indicates translational pausing on Escherichia coli ribosomes. FEBS Lett. 482 (2000) 185-188
    • (2000) FEBS Lett. , vol.482 , pp. 185-188
    • Ramachandiran, V.1    Kramer, G.2    Hardesty, B.3
  • 10
    • 0028907431 scopus 로고
    • Consecutive low-usage leucine codons block translation only when near the 5′ end of a message in Escherichia coli
    • Goldman E., Rosenberg A.H., Zubay G., and Studier F.W. Consecutive low-usage leucine codons block translation only when near the 5′ end of a message in Escherichia coli. J. Mol. Biol. 245 (1995) 467-473
    • (1995) J. Mol. Biol. , vol.245 , pp. 467-473
    • Goldman, E.1    Rosenberg, A.H.2    Zubay, G.3    Studier, F.W.4
  • 11
    • 0036022161 scopus 로고    scopus 로고
    • Codon optimization improves heterologous expression of a Schistosoma mansoni cDNA in HEK293 cells
    • Hamdan F.F., Mousa A., and Ribeiro P. Codon optimization improves heterologous expression of a Schistosoma mansoni cDNA in HEK293 cells. Parasitol Res. 88 (2002) 583-586
    • (2002) Parasitol Res. , vol.88 , pp. 583-586
    • Hamdan, F.F.1    Mousa, A.2    Ribeiro, P.3
  • 12
    • 0033848344 scopus 로고    scopus 로고
    • Use of modified BL21(DE3) Escherichia coli cells for high-level expression of recombinant peanut allergens affected by poor codon usage
    • Kleber-Janke T., and Becker W.M. Use of modified BL21(DE3) Escherichia coli cells for high-level expression of recombinant peanut allergens affected by poor codon usage. Protein Expr. Purif. 19 (2000) 419-424
    • (2000) Protein Expr. Purif. , vol.19 , pp. 419-424
    • Kleber-Janke, T.1    Becker, W.M.2
  • 14
    • 0038463475 scopus 로고    scopus 로고
    • Effects of codon usage versus putative 5′-mRNA structure on the expression of Fusarium solani cutinase in the Escherichia coli cytoplasm
    • Griswold K.E., Mahmood N.A., Iverson B.L., and Georgiou G. Effects of codon usage versus putative 5′-mRNA structure on the expression of Fusarium solani cutinase in the Escherichia coli cytoplasm. Protein Expr. Purif. 27 (2003) 134-142
    • (2003) Protein Expr. Purif. , vol.27 , pp. 134-142
    • Griswold, K.E.1    Mahmood, N.A.2    Iverson, B.L.3    Georgiou, G.4
  • 15
    • 0028584414 scopus 로고
    • Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs
    • Chen H., Bjerknes M., Kumar R., and Jay E. Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs. Nucleic Acids Res. 22 (1994) 4953-4957
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4953-4957
    • Chen, H.1    Bjerknes, M.2    Kumar, R.3    Jay, E.4
  • 16
    • 0346850783 scopus 로고    scopus 로고
    • Codon optimization reveals critical factors for high level expression of two rare codon genes in Escherichia coli: RNA stability and secondary structure but not tRNA abundance
    • Wu X., Jornvall H., Berndt K.D., and Oppermann U. Codon optimization reveals critical factors for high level expression of two rare codon genes in Escherichia coli: RNA stability and secondary structure but not tRNA abundance. Biochem. Biophys. Res. Commun. 313 (2004) 89-96
    • (2004) Biochem. Biophys. Res. Commun. , vol.313 , pp. 89-96
    • Wu, X.1    Jornvall, H.2    Berndt, K.D.3    Oppermann, U.4
  • 17
    • 0028865048 scopus 로고
    • Inhibition of translation initiation on Escherichia coli gnd mRNA by formation of a long-range secondary structure involving the ribosome binding site and the internal complementary sequence
    • Chang J.T., Green C.B., and Wolf Jr. R.E. Inhibition of translation initiation on Escherichia coli gnd mRNA by formation of a long-range secondary structure involving the ribosome binding site and the internal complementary sequence. J. Bacteriol. 177 (1995) 6560-6567
    • (1995) J. Bacteriol. , vol.177 , pp. 6560-6567
    • Chang, J.T.1    Green, C.B.2    Wolf Jr., R.E.3
  • 19
    • 0028090301 scopus 로고
    • Control of translation by mRNA secondary structure: the importance of the kinetics of structure formation
    • Ma C.K., Kolesnikow T., Rayner J.C., Simons E.L., Yim H., and Simons R.W. Control of translation by mRNA secondary structure: the importance of the kinetics of structure formation. Mol. Microbiol. 14 (1994) 1033-1047
    • (1994) Mol. Microbiol. , vol.14 , pp. 1033-1047
    • Ma, C.K.1    Kolesnikow, T.2    Rayner, J.C.3    Simons, E.L.4    Yim, H.5    Simons, R.W.6
  • 20
    • 0035827918 scopus 로고    scopus 로고
    • Cooperative effects by the initiation codon and its flanking regions on translation initiation
    • Stenstrom C.M., Holmgren E., and Isaksson L.A. Cooperative effects by the initiation codon and its flanking regions on translation initiation. Gene 273 (2001) 259-265
    • (2001) Gene , vol.273 , pp. 259-265
    • Stenstrom, C.M.1    Holmgren, E.2    Isaksson, L.A.3
  • 21
    • 0027745664 scopus 로고
    • An unstructured mRNA region and a 5′ hairpin represent important elements of the E. coli translation initiation signal determined by using the bacteriophage T7 gene 1 translation start site
    • Helke A., Geisen R.M., Vollmer M., Sprengart M.L., and Fuchs E. An unstructured mRNA region and a 5′ hairpin represent important elements of the E. coli translation initiation signal determined by using the bacteriophage T7 gene 1 translation start site. Nucleic Acids Res. 21 (1993) 5705-5711
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5705-5711
    • Helke, A.1    Geisen, R.M.2    Vollmer, M.3    Sprengart, M.L.4    Fuchs, E.5
  • 22
    • 0037123362 scopus 로고    scopus 로고
    • Influences on translation initiation and early elongation by the messenger RNA region flanking the initiation codon at the 3′ side
    • Stenstrom C.M., and Isaksson L.A. Influences on translation initiation and early elongation by the messenger RNA region flanking the initiation codon at the 3′ side. Gene 288 (2002) 1-8
    • (2002) Gene , vol.288 , pp. 1-8
    • Stenstrom, C.M.1    Isaksson, L.A.2
  • 23
    • 3042632236 scopus 로고    scopus 로고
    • RNA stem-loop enhanced expression of previously non-expressible genes
    • Paulus M., Haslbeck M., and Watzele M. RNA stem-loop enhanced expression of previously non-expressible genes. Nucleic Acids Res. 32 (2004) e78
    • (2004) Nucleic Acids Res. , vol.32
    • Paulus, M.1    Haslbeck, M.2    Watzele, M.3
  • 24
    • 0028036559 scopus 로고
    • Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature data
    • de Smit M.H., and van Duin J. Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature data. J. Mol. Biol. 244 (1994) 144-150
    • (1994) J. Mol. Biol. , vol.244 , pp. 144-150
    • de Smit, M.H.1    van Duin, J.2
  • 25
    • 31544482201 scopus 로고    scopus 로고
    • Translation of chloroplast psbD mRNA in Chlamydomonas is controlled by a secondary RNA structure blocking the AUG start codon
    • Klinkert B., Elles I., and Nickelsen J. Translation of chloroplast psbD mRNA in Chlamydomonas is controlled by a secondary RNA structure blocking the AUG start codon. Nucleic Acids Res. 34 (2006) 386-394
    • (2006) Nucleic Acids Res. , vol.34 , pp. 386-394
    • Klinkert, B.1    Elles, I.2    Nickelsen, J.3
  • 26
    • 27744591035 scopus 로고    scopus 로고
    • Improved heterologous gene expression in Escherichia coli by optimization of the AT-content of codons immediately downstream of the initiation codon
    • Nishikubo T., Nakagawa N., Kuramitsu S., and Masui R. Improved heterologous gene expression in Escherichia coli by optimization of the AT-content of codons immediately downstream of the initiation codon. J. Biotechnol. 120 (2005) 341-346
    • (2005) J. Biotechnol. , vol.120 , pp. 341-346
    • Nishikubo, T.1    Nakagawa, N.2    Kuramitsu, S.3    Masui, R.4
  • 28
    • 0030062876 scopus 로고    scopus 로고
    • Codon adjustment to maximise heterologous gene expression in Streptomyces lividans can lead to decreased mRNA stability and protein yield
    • Lammertyn E., Van Mellaert L., Bijnens A.P., Joris B., and Anne J. Codon adjustment to maximise heterologous gene expression in Streptomyces lividans can lead to decreased mRNA stability and protein yield. Mol. Gen. Genet. 250 (1996) 223-229
    • (1996) Mol. Gen. Genet. , vol.250 , pp. 223-229
    • Lammertyn, E.1    Van Mellaert, L.2    Bijnens, A.P.3    Joris, B.4    Anne, J.5
  • 29
    • 0031280034 scopus 로고    scopus 로고
    • Controlling messenger RNA stability in bacteria: strategies for engineering gene expression
    • Carrier T.A., and Keasling J.D. Controlling messenger RNA stability in bacteria: strategies for engineering gene expression. Biotechnol. Prog. 13 (1997) 699-708
    • (1997) Biotechnol. Prog. , vol.13 , pp. 699-708
    • Carrier, T.A.1    Keasling, J.D.2
  • 30
    • 0028171564 scopus 로고
    • mRNA degradation in Escherichia coli: a novel factor which impedes the exoribonucleolytic activity of PNPase at stem-loop structures
    • Causton H., Py B., McLaren R.S., and Higgins C.F. mRNA degradation in Escherichia coli: a novel factor which impedes the exoribonucleolytic activity of PNPase at stem-loop structures. Mol. Microbiol. 14 (1994) 731-741
    • (1994) Mol. Microbiol. , vol.14 , pp. 731-741
    • Causton, H.1    Py, B.2    McLaren, R.S.3    Higgins, C.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.