Thermalkalibacillus uzonensis gen. nov. sp. nov, a novel aerobic alkali-tolerant thermophilic bacterium isolated from a hot spring in Uzon Caldera, Kamchatka

Extremophiles

Volumn 10, Issue 4, 2006, Pages 337-345

  Zhao, Weidong ^a,b   Weber, Carolyn ^c   Zhang, Chuanlun L ^a,b   Romanek, Christopher S ^a,b   King, Gary M ^c   Mills, Gary ^b   Sokolova, Tatyana ^d   Wiegel, Juergen ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

^c UNIVERSITY OF MAINE   (United States)

^d RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

Author keywords

Alkaliphilic; Bacillaceae; Bacillales; Carbon monoxide tolerant; Fatty acids; Firmicutes; Thermophilic

Indexed keywords

RNA 16S;

AEROBIC BACTERIUM; ARTICLE; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY; RUSSIAN FEDERATION; THERMAL SPRING;

BACTERIA, AEROBIC; HOT SPRINGS; PHYLOGENY; RNA, RIBOSOMAL, 16S; RUSSIA; WATER MICROBIOLOGY;

BACILLACEAE; BACTERIA (MICROORGANISMS);

EID: 33748307563     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-006-0511-6     Document Type: Article

References (36)

1. Blum JS, Bindi AB, Buzzelli J, Stolz JF, Oremland RS (1998) Bacillus arsenicoselenatis, sp. nov., and Bacillus selenitireducens, sp. nov: two haloalkaliphiles from Mono lake, California that respire oxyanions of selenium and arsenic. Arch Microbiol 171:19-30
2. Claus D, Berkeley RCW (1986) Genus Bacillus cohn 1872. In: Sneath PHA, Mair NS, Sharpe ME, Holt JG (eds) Bergey's Manual of Systematic Bacteriology. Williams & Winkins, Baltimore, pp 1105-1139
3. 2O and NO). Microbiol Rev 60:609-640
4. Cook GM, Keis S, Morgan HW, van Ballmoos C, Matthey U, Kaim G, Dimroth P (2003) Purification and biochemical characterization of the F1FO-ATP synthase from thermoalkaliphilic Bacillus sp. strain TA2.A1. J Bacteriol 185:4442-4449
5. Cypionka H, Meyer O (1982) Influence of carbon monoxide on growth and respiration of carboxydotrophic and other aerobic organisms. FEMS Microbiol Lett 15:209-214
6. Demharter W, Hensel R (1989) Bacillus thermocloaceae sp. nov, a new thermophilic species from sewage-sludge. Syst Appl Microbiol. 11:272-276
7. Dunfield KE, King GM (2004) Molecular analysis of carbon monoxide-oxidizing bacteria colonizing recent Hawaiian volcanic deposits. Appl Environ Microbiol 70:4242-4248
8. Garrity MG, Bell JA, Lilburn TG (2004) Taxonomic Outline of the Prokaryotes. Bergey's Manual of Systematic Bacteriology, second edition, release 5.0 May 2004. http://141.150.157.80/bergeysoutline/outline/ bergeysoutline_5_2004.pdf
9. Gee DL, Brown WD (1980) The effect of carbon monoxide on bacterial growth. Meat Science 5:215-222
10. Guckert JB, Antworth CP, Nichols PD, White DC (1985) Phospholipid, ester-linked fatty-acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediments. FEMS Microbiol Ecol 31:147-158
11. Hardy K, King GM (2001) Enrichment of a high affinity CO-oxidizer in Maine forest soil. Appl Environ Microbiol 67:3671-3676
12. Heyndrickx M, Lebbe L, Vancanneyt M, Kersters K, de Vos P, Logan NA, Forsyth G, Nazli S, Ali N, Berkeley RCW (1997) A polyphasic reassessment of the genus Aneurinibacillus, reclassification of Bacillus thermoaerophilus (Meier-stauffer et al 1996) as Aneurinibacillus thermoaerophilus comb. nov., and emended descriptions of A. aneurinilyticus corrig, A. migulanus, and A. thermoaerophilus. Int J Syst Bacteriol 47:808-817
13. Higgins DG, Sharp PM (1988) Clustal: a package for performing multiple sequence alignments on a microcomputer. Gene 73:237-244
14. Horikoshi K (1999) Alkaliphiles: Some applications of their products for biotechnology. Microbiol. Mol Biol Rev 63:735-750
15. Horikoshi K (2004) Alkaliphiles. Proc Jpn Acad Ser B-Phys Biol Sci 80:166-178
16. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic, New York, pp 21-123
17. Kampfer P (1994) Limits and possibilities of total fatty-acid analysis for classification and identification of bacillus species. Syst Appl Microbiol 17:86-98
18. Kaneda T (1967) Fatty acids in genus Bacillus. I. iso- and anteisofatty acids as characteristic constituents of lipids in 10 species. J Bacteriol 93:894-903
19. Kevbrin VV, Romanek CS, Wiegel J (2004) Alkalithermophiles: a double challenge from extreme environments. In: Seckbach J (ed) Cellular origins: life in extreme habitats and astrobiology. Kluwer Academic, Dordrecht, The Netherlands
20. King GA (2003) Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity. Appl Environ Microbiol 69:7257-7265
21. Kruger B, Meyer O (1984) Thermophilic Bacilli growing with carbon-monoxide. Arch Microbiol 139:402-408
22. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings Bioinform 5:150-163
23. Manachini PL, Fortina MG, Parini C, Craveri R (1985) Bacillus thermoruber sp. nov., nom. rev., a red-pigmented thermophilic bacterium. Int J Syst Bacteriol 35:493-496
24. Meier-Stauffer K, et al. (1996) Description of Bacillus thermoaerophilus sp. nov., to include sugar beet isolates and Bacillus brevis ATCC 12990. Int J Syst Bacteriol 46:532-541
25. Mesbah M, Premachandran U, Whitman W (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167
26. Meyer O, Frunzke K, Gadkari D, Jacobitz S, Hugendieck I, Kraut M (1990) Utilization of carbon-monoxide by aerobes - recent advances. Fems Microbiol Rev 87:253-260
27. Moran MA, Buchan A, Gonzalez JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C, Brinkac L, Lewis M, Johri S, Weaver B, Pai G, Eisen JA, Rahe E, Sheldon WM, Ye W, Miller TR, Carlton J, Rasko DA, Paulsen IT, Ren Q, Daugherty SC, Deboy RT, Dodson RJ, Durkin AS, Madupu R, Nelson WC, Sullivan SA, Rosovitz MJ, Haft DH, Selengut J, Ward N (2004) Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432:910-913
28. Nazina TN, et al. (2001) Taxonomic study of aerobic thermophilic Bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int J Syst Evol Microbiol 51:433-446
29. Nielsen P, Fritze D, Priest FG (1995) Phenetic diversity of alkaliphilic Bacillus strains - proposal for 9 new species. Microbiol UK 141:1745-1761
30. Olsson K, Keis S, Morgan HW, Dimroth P, Cook GM (2003) Bioenergetic properties of the thermoalkaliphilic Bacillus sp. strain TA2.A1. J Bacteriol 185:461-465
31. Peddie CJ, Cook GM, Morgan HW (2000) Sucrose transport by the alkaliphilic, thermophilic Bacillus sp. strain TA2.A1 is dependent on a sodium gradient. Extremophiles 4:291-296
32. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
33. Widdel F, Bak F (1992) Gram-negative mesophilic sulfate-reducing bacteria. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer H (eds) The Prokaryotes, 2nd edn. Springer-Verlag, Berlin Heidelberg New York, pp 3352-3378
34. Wiegel J (1981) Distinction between the Gram reaction and the Gram type of bacteria. Int J Syst Bacteriol 31:88
35. Yumoto I, Yamazaki K, Sawabe T, Nakano K, Kawasaki K, Ezura Y, Shinano H (1998) Bacillus horti sp. nov., a new Gram-negative alkaliphilic Bacillus. Int J Syst Bacteriol 48:565-571
36. Yumoto I, Yamaga S, Sogabe Y, Nodasaka Y, Matsuyama H, Nakajima K, Suemori A (2003) Bacillus krulwichiae sp. nov., a halotolerant obligate alkaliphile that utilizes benzoate and m-hydroxybenzoate. Int J Syst Evol Microbiol 53:1531-1536