Assessment of genetic and epigenetic variation in hop plants regenerated from sequential subcultures of organogenic calli

Journal of Plant Physiology

Volumn 163, Issue 10, 2006, Pages 1071-1079

  Peredo, Elena L ^a   Angeles Revilla M ^a   Arroyo García, Rosa ^b  

^a UNIVERSITY OF OVIEDO   (Spain)

^b INIA   (Spain)

Author keywords

AFLP; Humulus lupulus L; Methylation pattern; MSAP; Somaclonal variation

Indexed keywords

GENETIC ENGINEERING;

AFLP; HUMULUS LUPULUS L; METHYLATION PATTERN; SOMACLONAL VARIATION;

PLANTS (BOTANY);

GENETIC ENGINEERING; METHYLATION; PLANTS;

HUMULUS LUPULUS;

EID: 33748302332     PISSN: 01761617     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jplph.2005.09.010     Document Type: Article

References (29)

1. Batista D., Ascensao L., Sousa M.J., and Pais M.S. Adventitious shoot mass production of hop (Humulus lupulus L.) var Eroica in liquid medium from organogenic nodule cultures. Plant Sci 151 (2000) 47-57
2. Bouman H., and De Klerk G.J. Measurement of the extent of somaclonal variation in begonia plants regenerated under various conditions. Comparison of three assays. Theor Appl Genet 102 (2001) 111-117
3. Brar D.S., and Jain S.M. In: Jain S.M., Brar D.S., and Ahloowalia B.S. (Eds). Somaclonal variation and induced mutations in crop improvement (1998), Kluwer Academic Press, Dordrecht Boston London 15-24
4. Brugmans B., Van der Hulst R., Visser R., Lindhout P., and Van Eck H. A new and versatile method for the successful conversion of AFLP markers into simple single locus markers. Nucleic Acids Res (2003) 31e55
5. Cervera M.T., Cabezas J.A., Sancha J.C., Martínez de Toda F., and Martínez-Zapater J.M. Application of AFLPs to the characterization of grapevine Vitis vinifera L. genetic resources. A case study with accessions from Rioja (Spain). Theor Appl Genet 97 (1998) 51-59
6. Cervera M.T., Ruiz-García L., and Martínez-Zapater J.M. Analysis of DNA methylation in Arabidopsis thaliana based on mathylation-sensitive AFLP markers. Mol Genet Genom 268 (2002) 543-552
7. Finnegan E.J., Genger R.K., Peacock W.J., and Dennis E.S. DNA methylation in plants. Annu Rev Plant Physiol Plant Mol Biol 49 (1998) 223-247
8. Gurriarán M.J., Revilla M.A., and Tamés R.S. Adventitious shoot regeneration in cultures of Humulus lupulus L. (hop) cvs. Brewers Gold and Nugget. Plant Cell Rep 18 (1999) 1007-1011
9. Hao Y.J., Wen X.P., and Deng X.X. Genetic and epigenetic evaluations of citrus calluses recovered from slow-growth culture. J Plant Physiol 161 (2004) 479-484
10. Hewezi T., Jardinaud F., Alibert G., and Kallerhoff J. A new approach for efficient regeneration of a recalcitrant genotype of sunflower (Helianthus annuus) by organogenesis induction on split embryonic axes. Plant Cell Tiss Org Cult 73 (2003) 81-86
11. Horlemann C., Schwekendiek A., Höhnle M., and Weber G. Regeneration and Agrobacterium-mediated transformation of hop (Humulus lupulus L.). Plant Cell Rep 22 (2003) 210-217
12. Hossain M.A., Konisho K., Minami M., and Nemoto K. Somaclonal variation of regenerated plants in chilli pepper (Capsicum annum L.). Euphytica 130 (2003) 233-239
13. Jaligot E., Rival A., Beulé T., Dussert S., and Verdeil J.L. Somaclonal variation in oil palm (Elaeis guineensis Jacq.): the DNA methylation hypothesis. Plant Cell Rep 19 (2000) 684-690
14. Jaligot E., Beulé T., and Rival A. Methylation sensitive RFLPs: characterisation of two oil palm markers showing somaclonal variation-associated polymorphism. Theor Appl Genet 104 (2002) 1263-1269
15. Jaligot E., Beulé T., Baurens F.C., Billotte N., and Rival A. Search for methylation-sensitive amplification polymorphism associated with the "mantled" variant phenotype in oil palm (Elaeis guineensis Jacq.). Genome 47 (2004) 224-228
16. James C.M., Lesemann S.S., and Down G.J. Modified AFLP analysis method for species with small genomes. Plant Mol Biol Rep 21 (2003) 303-307
17. Kaeppler S.M., Kaeppler H., and Rhee Y. Epigenetic aspects of somaclonal variation in plants. Plant Mol Biol 43 (2000) 179-188
18. Matthes M., Singh R., Cheah S.C., and Karp A. Variation in oil palm (Elaeis guineensis Jacq.) tissue culture-derived regenerants revealed by AFLPs with methylation-sensitive enzymes. Theor Appl Genet 102 (2001) 971-979
19. McClelland M., Nelson M., and Raschke E. Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res 22 (1994) 3640-3659
20. Nei M., and Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76 (1979) 5269-5273
21. Okada Y., Saeki K., Inaba A., Suda N., Kaneko T., and Ito K. Construction of gene expression system in hop (Humulus lupulus) lupulin gland using valerophenone synthase promoter. J Plant Physiol 160 (2003) 1101-1108
22. Patzak J. Assessment of somaclonal variability in hop (Humulus lupulus L.) in vitro meristem cultures and clones by molecular methods. Euphytica 131 (2003) 343-350
23. Peraza-Echeverria S., Herrera-Valencia V.A., and James-Kay A. Detection of DNA methylation changes in micropropagated plants using methylation-sensitive amplification polymorphism (MSAP). Plant Sci 161 (2001) 359-367
24. Polanco C., and Ruiz M.L. AFLP analysis of somaclonal variation in Arabidopsis thaliana regenerated plants. Plant Sci 162 (2002) 817-824
25. Roy A.T., Leggett G., and Koutoulis A. Development of a shoot multiplication system for hop (Humulus lupulus L.). In Vitro Cell Dev Biol-Plant 37 (2001) 79-83
26. Soniya E.V., Banerjee N.S., and Das M.R. Genetic analysis of somaclonal variation among callus-derived plants of tomato. Curr Sci 80 (2001) 1213-1215
27. Tatusova T.A., and Madden T.L. Blast 2 sequences- a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174 (1999) 247-250
28. Vos P., Hogers R., Bleeker M., Reijans M., Van de Lee T., Hornes M., et al. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23 (1995) 4407-4414
29. Xiong L.Z., Xu C.G., Saghai Maroof M.A., and Zhang Q. Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet 261 (1999) 439-446