Study of interactions of flavonoids with DNA using acridine orange as a fluorescence probe

Sensors and Actuators, B: Chemical

Volumn 119, Issue 1, 2006, Pages 199-208

  Bi, Shuyun ^a,b   Qiao, Chunyu ^a   Song, Daqian ^a   Tian, Yuan ^a   Gao, Dejiang ^a   Sun, Ying ^a   Zhang, Hanqi ^a  

^a JILIN UNIVERSITY   (China)

^b YANBIAN UNIVERSITY   (China)

Author keywords

Acridine orange; DNA; Fluorescence quenching; Kaempferide; Luteolin; Quercetin

Indexed keywords

DNA; FLUORESCENCE; QUENCHING; RATE CONSTANTS; SPECTROSCOPIC ANALYSIS; ULTRAVIOLET RADIATION; VISCOSITY;

ACRIDINE ORANGE; FLUORESCENCE QUENCHING; KAEMPFERIDE; LUTEOLIN; QUERCETIN;

PIGMENTS;

EID: 33748298854     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2005.12.014     Document Type: Article

References (38)

1. Wadkins R.M., Vladu B., and Tung C.-S. Actinomycin D binds to metastable hairpins in single-stranded DNA. Biochemistry 37 (1998) 11915-11923
2. Robinson H., Priebe W., Chaires J.B., and Wang A.H.-J. Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy. Biochemistry 36 (1997) 8663-8670
3. Lin C.H., and Patel D. Solution structure of the covalent duocarmycin A-DNA duplex complex. J. Mol. Biol. 248 (1995) 162-179
4. Hurley L.H. DNA and its associated processes as targets for cancer therapy. Nat. Rev. Cancer 2 (2002) 188-200
5. Cao Y., and He X.W. Studies of interaction between safranine T and double helix DNA by spectral methods. Spectrochim. Acta A 54 (1998) 883-892
6. Krishna A.G., Kumar D.V., Khan B.M., Rawal S.K., and Ganesh K.N. Taxol-DNA interactions: fluorescence and CD studies of DNA groove binding properties of taxol. Biochim. Biophys. Acta 1381 (1998) 104-112
7. Radi A., Ries M.A.E., and Kandil S. Electrochemical study of the interaction of levofloxacin with DNA. Anal. Chim. Acta 495 (2003) 61-67
8. Reinhardt C.G., and Krugh T.R. A comparative study of ethidium bromide complexes with dinucleotides and DNA: direct evidence for intercalation and nucleic acid sequence preferences. Biochemistry 17 (1978) 4845-4854
9. Vergani L., Mascetti G., Gavazzo P., and Nicolini C. Ethidium bromide intercalation and chromatin structure: A thermal analysis. Thermochim. Acta 294 (1997) 193-204
10. Sutherla J.C., and Sutherla B.M. Ethidium bromide-DNA complex-wavelength dependence of pyrimidine dimer inhibition and sensitized fluorescence as probes of excited States. Biopolymer 9 (1970) 639-654
11. Cao Y., He X.W., Gao Z., and Peng L. Fluorescence energy transfer between acridine orange and safranine T and its application in the determination of DNA. Talanta 49 (1999) 377-383
12. Rye H.S., Dabora J.M., Quesada M.A., Mathies R.A., and Glazer A.N. Fluorometric assay using dimeric dyes for double- and single-stranded DNA and RNA with picogram sensitivity. Anal. Biochem. 208 (1993) 144-150
13. Chen Q.Y., Li D.H., Yang H.H., Zhu Q.Z., Xu J.G., and Zhao Y. Interaction of a novel red-region fluorescent probe, Nile Blue, with DNA and its application to nucleic acids assay. Analyst 124 (1999) 901-906
14. Lancker M.V., and Gheyssens L.C. A comparison of 4 frequently used assays for quantitative-determination of DNA. Anal. Lett. 19 (1986) 615-623
15. Huang C.Z., Li Y.F., and Feng P. A spectrophotometric study on the interaction of neutral red with double-stranded DNA in large excess. Talanta 55 (2001) 321-328
16. E. Mddleton, C. Kandaswami, The flavonoids: advances in research since 1986, London, 1994, pp. 619-652.
17. Kumar C.V., and Asunncion E.H. DNA binding studies and site selective fluorescence sensitization of an anthryl probe. J. Am. Chem. Soc. 115 (1993) 8547-8553
18. Lerman L.S. Structural considerations in interaction of DNA and acridines. J. Mol. Biol. 3 (1961) 18-30
19. Marmur J. Procedure for isolation of deoxyribonucleic acid from micro-organisms. J. Mol. Biol. 3 (1961) 208-218
20. Udenfriend S., and Zaltzman P. Fluorescence characteristics of purines, pyrimidines, and their derivatives: measurement of guanine in nucleic acid hydrolyzates. Anal. Biochem. 3 (1962) 49-59
21. Brun A.M., and Harriman A. Dynamics of electron transfer between intercalated polycyclic molecules: effect of interspersed bases. J. Am. Chem. Soc. 114 (1992) 3656-3660
22. Pyle A.M., Rehmann J.P., Meshoyrer R., Kumar C.V., Turro N.J., and Barton J.K. Mixed-ligand complexes of ruthenium(II): factors governing binding to DNA. J. Am. Chem. Soc. 111 (1989) 3051-3058
23. Jayaram B., Sharp K.A., and Honig B. The electrostatic potential of B-DNA. Biopolymer 28 (1989) 975-993
24. Lavery R., and Pullman B. The molecular electrostatic potential, steric accessibility and hydration of dickerson B-DNA dodecamer D(CPGPCPGPAPAPTPTPCPGPCPG). Nucl. Acid Res. 9 (1981) 3765-3777
25. Pratviel G., Bernadou J., and Meunier B. Carbon-hydrogen bonds of DNA sugar units as targets for chemical nucleases and drugs. Angew. Chem. Int. Ed. Engl. 34 (1995) 746-769
26. Kumar C.V., Turner R.S., and Asuncion E.H. Groove binding of a styrylcyanine dye to the DNA double helix: the salt effect. J. Photochem. Photobiol. A: Chem. 74 (1993) 231-238
27. Wang A.H.-J., and Teng M.-K. In: Bugg C.E., and Ealick S.E. (Eds). Crystallographic and Modeling Methods in Molecular Design (1990), Springer, New York 123
28. Kapicak L., and Gabbay E.J. Topography of nucleic acid helixes in solutions. XXXIII. Effect of aromatic cations on the tertiary structures of deoxyribonucleic acid. J. Am. Chem. Soc. 97 (1975) 403-408
29. Song Y.F., and Yang P. Mononuclear tetrapyrido [3,2-a:2′, 3′-c:3″, 2″-h:2‴, 3‴-j] phenazine (tpphz) cobalt complex. Polyhedron 20 (2001) 501-506
30. Satyanarayana S., Dabrowiak J.C., and Chaires J.B. Neither DELTA- nor LAMBDA-tris(phenanthroline) ruthenium (II) binds to DNA by classical intercalation. Biochemistry 31 (1992) 9319-9324
31. Deng H., Li H., Xu H., and Ji L.N. Influence of ligand configuration and hydrophobicity on DNA binding of polypyridyl ruthenium (II) complexes. Acta Chim. Sinica 60 (2002) 2159-2166
32. Lakowitcz J.R. Principles of Fluorescence Spectroscopy (1999), Plenum Press, New York pp. 237-259
33. Dewey T.G. Biophysical and Biochemical Aspects of Fluorescence Spectroscopy (1991), Plenum, New York pp. 1-41
34. Lakowica J.R., and Weber G. Quenching of fluorescence by oxygen. Probe for structural fluctuations in macromolecules. Biochemistry 12 (1973) 4161-4170
35. Ware W.R. Oxygen quenching of fluorescence in solution: an experimental study of the diffusion process. J. Phys. Chem. 66 (1962) 455-458
36. Marty A., Boiret M., and Deumie M. How to illustrate ligand-protein binding in A class experiment-an elementary fluorescent assay. J. Chem. Edu. 63 (1986) 365-366
37. Feng X.Z., Zhang L., Yang L.J., Wang C., and Bai C.L. Investigation of the interaction between acridine orange and bovine serum albumin. Talanta 47 (1998) 1223-1229
38. Jiang M., Xie M.X., Zheng D., Liu Y., Li X.Y., and Chen X. Spectroscopic studies on the interaction of cinnamic acid and its hydroxyl derivatives with human serum albumin. J. Mol. Struct. 692 (2004) 71-80