Local peptide movement in the photoreaction intermediate of rhodopsin

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 34, 2006, Pages 12729-12734

  Nakamichi, Hitoshi ^a   Okada, Tetsuji ^a,b  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

G protein coupled receptor; Membrane protein; Visual pigment

Indexed keywords

BATHORHODOPSIN; G PROTEIN COUPLED RECEPTOR; LUMIRHODOPSIN; RHODOPSIN; UNCLASSIFIED DRUG;

ARTICLE; CIS TRANS ISOMERISM; CONFORMATIONAL TRANSITION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; X RAY CRYSTALLOGRAPHY;

ANIMALS; CATTLE; CRYSTALLOGRAPHY, X-RAY; ELECTROSTATICS; MODELS, MOLECULAR; PEPTIDES; PHOTOCHEMISTRY; PROTEIN STRUCTURE, TERTIARY; RHODOPSIN; SPECTRUM ANALYSIS;

EID: 33748079137     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0601765103     Document Type: Article

References (40)

1. Kristiansen, K. (2004) Pharmacol. Ther. 103, 21-80.
2. Gether, U. (2000) Endocr. Rev. 21, 90-113.
3. Hubbell, W. L., Altenbach, C., Hubbell, C. M. & Khorana, H. G. (2003) Adv. Protein Chem. 63, 243-290.
4. Palczewski, K., Kumasaka, T., Hori, T., Behnke, C. A., Motoshima, H., Fox, B. A., Le Trong, I., Teller, D. C., Okada, T., Stenkamp, R. E., et al. (2000) Science 289, 739-745.
5. Okada, T., Sugihara, M., Bondar, A.-N., Elstner, M., Entel, P. & Buss, V. (2004) J. Mol. Biol. 342, 571-581.
6. Li, J., Edwards, P. C., Burghammer, M., Villa, C. & Schertler, G. F. (2004) J. Mol. Biol. 343, 1409-1438.
7. Kukura, P., McCamant, D. W., Yoon, S., Wandschneider, D. B. & Mathies, R. A. (2005) Science 310, 1006-1009.
8. Lewis, J. W. & Kliger, D. S. (2000) Methods Enzymol. 315, 164-178.
9. Yoshizawa, T. & Wald, G. (1963) Nature 197, 1279-1286.
10. Rothschild, K. J., Cantore, W. A. & Marrero, H. (1983) Science 219, 1333-1335.
11. Nakamichi, H. & Okada, T. (2006) Angew. Chem. Int. Ed. 45, 4270-4273.
12. Birge, R. R. (1990) Biochim. Biophys. Acta 1016, 293-327.
13. Kandori, H., Shichida, Y. & Yoshizawa, T. (2001) Biochemistry (Moscow) 66, 1197-1209.
14. Kim, J. M., Altenbach, C., Kono, M., Oprian, D. D., Hubbell, W. L. & Khorana, H. G. (2004) Proc. Natl. Acad. Sci. USA 101, 12508-12513.
15. Guex, N. & Peitsch, M. C. (1997) Electrophoresis 18, 2714-2723.
16. Okada, T., Fuiyoshi, Y., Silow, M., Navarro, J., Landau, E. & Shichida, Y. (2002) Proc. Natl. Acad. Sci. USA 99, 5982-5987.
17. Burmeister, W. P. (2000) Acta. Crystallogr. D 56, 328-341.
18. Borhan, B., Souto, M. L., Imai, H., Shichida, Y. & Nakanishi, K. (2000) Science 288, 2209-2212.
19. Patel, A. B., Crocker, E., Reeves, P. J., Getmanova, E. V., Eilers, M., Khorana, H. G. & Smith, S. O. (2004) Proc. Natl. Acad. Sci. USA 101, 10048-10053.
20. Ebrey, T. G. & Kumauchi, M. (2005) Biophys. J. 88, L41-L42.
21. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
22. Merritt, E. A. & Murphy, M. E. P. (1994) Acta. Crystallogr. D 50, 869-873.
23. Ballesteros, J. A. & Weinstein, H. (1995) Methods Neurosci. 25, 366-425.
24. Pan, D. H. & Mathies, R. A. (2001) Biochemistry 40, 7929-7936.
25. Ganter, U. M., Gartner, W. & Siebert, F. (1988) Biochemistry 27, 7480-7488.
26. Han, M., Lou, J., Nakanishi, K., Sakmar, T. P. & Smith, S. O. (1997) J. Biol. Chem. 272, 23081-23085.
27. Marr, K. & Peters, K. S. (1991) Biochemistry 30, 1254-1258.
28. Edman, K., Royant, A., Larsson, G., Jacobson, F., Taylor, T., van der Spoel, D., Landau, E. M., Pebay-Peyroula, E. & Neutze, R. (2004) J. Biol. Chem. 279, 2147-2158.
29. Abdulaev, N. G. & Ridge, K. D. (1998) Proc. Natl. Acad. Sci. USA 95, 12854-12859.
30. Oprian, D. D. (1992) J. Bioenerg. Biomembr. 24, 211-217.
31. Farrens, D. L., Altenbach, C., Yang, K., Hubbell, W. L. & Khorana, H. G. (1996) Science 274, 768-770.
32. Shi, L., Liapakis, G., Xu, R., Guarnieri, F., Ballesteros, J. A. & Javitch, J. A. (2002) J. Biol. Chem. 277, 40989-40996.
33. Ruprecht, J. J., Mielke, T., Vogel, R., Villa, C. & Schertler, G. F. (2004) EMBO J. 23, 3609-3620.
34. Okada, T. & Palczewski, K. (2001) Curr. Opin. Struct. Biol. 11, 420-426.
35. Yan, E. C. Y., Kazmi, M. A., Ganim, Z., Hou, J. M., Pan, D. H., Chang, B. S. W., Sakmar, T. P. & Mathies, R. A. (2004) Proc. Natl. Acad. Sci. USA 100, 9262-9267.
36. Kenakin, T. (2003) Trends Pharmacol. Sci. 24, 346-354.
37. Swaminath, G., Xiang, Y., Lee, T. W., Steenhuis, J., Parnot, C. & Kobilka, B. K. (2004) J. Biol. Chem. 279, 686-691.
38. Otwinowski, Z. & Minor, W. (1997) Methods Enzymol 276, 307-326.
39. Yeates, T. O. (1997) Methods Enzymol. 276, 344-358.
40. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., et al. (1998) Acta. Crystallogr. D 54, 905-921.