TRFMA: A web-based tool for terminal restriction fragment length polymorphism analysis based on molecular weight

Bioinformatics

Volumn 22, Issue 14, 2006, Pages 1788-1789

  Nakano, Yoshio ^a   Takeshita, Toru ^a   Yamashita, Yoshihisa ^a  

^a KYUSHU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; RNA 16S;

ACCESS TO INFORMATION; ACCURACY; COMPUTER INTERFACE; COMPUTER PROGRAM; CONFERENCE PAPER; DATA ANALYSIS; GENE SEQUENCE; GENETIC ANALYSIS; INFORMATION PROCESSING; INTERNET; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; PEPTOSTREPTOCOCCUS; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE DATABASE; STREPTOCOCCUS; STREPTOCOCCUS MITIS; STREPTOCOCCUS ORALIS; STREPTOCOCCUS SANGUINIS; WEB BROWSER;

EID: 33747871384     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl186     Document Type: Conference Paper

References (6)

1. Dunbar,J. et al. (2001) Phylogenetic specificity and reproducibility and new method for analysis terminal restriction fragment profiles of 16S rRNA gene from bacterial communities. Appl. Environ. Microbiol., 67, 190-197.
2. Kaplan,C.W. and Kitts,C.L. (2003) Variation between observed and true terminal restriction fragment length is dependent on true TRF length and purine content. J. Microbiol. Methods, 54, 121-125.
3. Kent,A.D. et al. (2003) Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. Appl. Environ. Microbiol., 69, 6768-6776.
4. Marsh,T.L. (2005) Culture-independent microbial community analysis with terminal restriction fragment length polymorphism. Methods Enzymol., 397, 308-329.
5. Paster,B.J. et al. (2001) Bacterial diversity in human subgingival plaque. J. Bacteriol., 183, 3770-3783.
6. Smith,C.J. et al. (2005) T-Align, a web-based tool for comparison of multiple terminal restriction fragment length polymorphism profiles. FEMS Microbiol. Ecol., 54, 375-380.