-
2
-
-
0041660936
-
Spurious spatial periodicity of co-expression in microarray data due to printing design
-
Balazsi G., Kay K.A., Barabasi A.-L., and Oltvai Z.N. Spurious spatial periodicity of co-expression in microarray data due to printing design. Nucleic Acids Res. 31 (2003) 4425-4433
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4425-4433
-
-
Balazsi, G.1
Kay, K.A.2
Barabasi, A.-L.3
Oltvai, Z.N.4
-
3
-
-
33747884345
-
Gene expression omnibus: Microarray data storage, submission, retrieval, and analysis
-
Barrett T., and Edgar R. Gene expression omnibus: Microarray data storage, submission, retrieval, and analysis. Methods Enzymol. 411 (2006) 352-369
-
(2006)
Methods Enzymol.
, vol.411
, pp. 352-369
-
-
Barrett, T.1
Edgar, R.2
-
4
-
-
13244260827
-
Calibration and assessment of channel-specific biases in microarray data with extended dynamic range
-
Bengtsson H., Jonsson G., and Vallon-Christersson J. Calibration and assessment of channel-specific biases in microarray data with extended dynamic range. BMC Bioinform. 5 (2004)
-
(2004)
BMC Bioinform.
, vol.5
-
-
Bengtsson, H.1
Jonsson, G.2
Vallon-Christersson, J.3
-
5
-
-
33747884344
-
Data storage and analysis in ArrayExpress
-
Brazma A., Kapushesky M., Parkinson H., Sarkins U., and Shojatalab M. Data storage and analysis in ArrayExpress. Methods Enzymol. 411 (2006) 370-386
-
(2006)
Methods Enzymol.
, vol.411
, pp. 370-386
-
-
Brazma, A.1
Kapushesky, M.2
Parkinson, H.3
Sarkins, U.4
Shojatalab, M.5
-
6
-
-
0035979269
-
Image metrics in the statistical analysis of DNA microarray data
-
Brown C.S., Goodwin P.C., and Sorger P.K. Image metrics in the statistical analysis of DNA microarray data. Proc. Natl. Acad. Sci. USA 98 (2001) 8944-8949
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8944-8949
-
-
Brown, C.S.1
Goodwin, P.C.2
Sorger, P.K.3
-
7
-
-
33747839776
-
Sample labeling: An overview
-
Brownstein M. Sample labeling: An overview. Methods Enzymol. 410 (2006) 222-237
-
(2006)
Methods Enzymol.
, vol.410
, pp. 222-237
-
-
Brownstein, M.1
-
8
-
-
0037253089
-
Protein arrays: The current state-of-the-art
-
Cutler P. Protein arrays: The current state-of-the-art. Proteomics 3 (2003) 3
-
(2003)
Proteomics
, vol.3
, pp. 3
-
-
Cutler, P.1
-
9
-
-
0037188477
-
Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range
-
Dudley A.M., Aach J., Steffen M.A., and Church G.M. Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range. Proc. Natl. Acad. Sci. 99 (2002) 7554-7559
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 7554-7559
-
-
Dudley, A.M.1
Aach, J.2
Steffen, M.A.3
Church, G.M.4
-
10
-
-
0041336612
-
Effects of atmospheric ozone on microarray data quality
-
Fare T.L., Coffey E.M., Dai H., He Y.D., Kessler D.A., Kilian K.A., Koch J.E., Eric L., Marton M.J., Meyer M.R., Stoughton R.B., Tokiwa G.Y., and Wang Y. Effects of atmospheric ozone on microarray data quality. Anal. Chem. 75 (2003) 4672-4675
-
(2003)
Anal. Chem.
, vol.75
, pp. 4672-4675
-
-
Fare, T.L.1
Coffey, E.M.2
Dai, H.3
He, Y.D.4
Kessler, D.A.5
Kilian, K.A.6
Koch, J.E.7
Eric, L.8
Marton, M.J.9
Meyer, M.R.10
Stoughton, R.B.11
Tokiwa, G.Y.12
Wang, Y.13
-
11
-
-
0242321072
-
Comparison of fluorescence and resonance light scattering for highly sensitive microarray detection of bacterial pathogens
-
Francois P., Bento M., Vaudaux P., and Schrenzel J. Comparison of fluorescence and resonance light scattering for highly sensitive microarray detection of bacterial pathogens. J. Microbiol. Methods 55 (2003) 755-762
-
(2003)
J. Microbiol. Methods
, vol.55
, pp. 755-762
-
-
Francois, P.1
Bento, M.2
Vaudaux, P.3
Schrenzel, J.4
-
12
-
-
0242579852
-
Protein and antibody microarray technology
-
Gloekler J., and Angenendt P. Protein and antibody microarray technology. J. Chromatogr. B 797 (2003) 229
-
(2003)
J. Chromatogr. B
, vol.797
, pp. 229
-
-
Gloekler, J.1
Angenendt, P.2
-
13
-
-
0033818954
-
A concise guide to cDNA microarray analysis
-
Hegde P., Qi R., Abernathy K., Gay C., Dharap S., Gaspard R., Hughes J.E., Snesrud E., Lee N., and Quackenbush J. A concise guide to cDNA microarray analysis. Biotechniques 29 (2000) 548-562
-
(2000)
Biotechniques
, vol.29
, pp. 548-562
-
-
Hegde, P.1
Qi, R.2
Abernathy, K.3
Gay, C.4
Dharap, S.5
Gaspard, R.6
Hughes, J.E.7
Snesrud, E.8
Lee, N.9
Quackenbush, J.10
-
14
-
-
18244384210
-
Multiple laboratory comparison of microarray platforms
-
Irizarry R.A., Warren D., Specer F., Kim I.F., Biswal S., Frank B.C., Gabrielson E., Garcia J.G.N., Germino G., Griffin C., Hilmer S.C., Hoffman E., Jedicka A.E., Kawasaki E., Martinez-Murillo F., Morsberger L., KLee H., Peterson D., Quackenbush J., Scott A., Wison M., Yang Y., Ye S.Q., and Yu W. Multiple laboratory comparison of microarray platforms. Nature Methods 2 (2005) 345-349
-
(2005)
Nature Methods
, vol.2
, pp. 345-349
-
-
Irizarry, R.A.1
Warren, D.2
Specer, F.3
Kim, I.F.4
Biswal, S.5
Frank, B.C.6
Gabrielson, E.7
Garcia, J.G.N.8
Germino, G.9
Griffin, C.10
Hilmer, S.C.11
Hoffman, E.12
Jedicka, A.E.13
Kawasaki, E.14
Martinez-Murillo, F.15
Morsberger, L.16
KLee, H.17
Peterson, D.18
Quackenbush, J.19
Scott, A.20
Wison, M.21
Yang, Y.22
Ye, S.Q.23
Yu, W.24
more..
-
15
-
-
0037225720
-
Quantum dots finally come of age
-
Jovin T.M. Quantum dots finally come of age. Nature Biotechnol. 21 (2003) 32-33
-
(2003)
Nature Biotechnol.
, vol.21
, pp. 32-33
-
-
Jovin, T.M.1
-
16
-
-
0035032570
-
Statistical design and the analysis of gene expression microarray data
-
Kerr M.K., and Churchill G.A. Statistical design and the analysis of gene expression microarray data. Genet. Res. 77 (2001) 123-128
-
(2001)
Genet. Res.
, vol.77
, pp. 123-128
-
-
Kerr, M.K.1
Churchill, G.A.2
-
17
-
-
0037326065
-
Automated analysis of SEM X-Ray spectral images: A powerful new microanalysis tool
-
Kotula P.G., Keenan M.R., and Michael J.R. Automated analysis of SEM X-Ray spectral images: A powerful new microanalysis tool. Microsc. Microanal. 9 (2003) 1-17
-
(2003)
Microsc. Microanal.
, vol.9
, pp. 1-17
-
-
Kotula, P.G.1
Keenan, M.R.2
Michael, J.R.3
-
18
-
-
18244378238
-
Independence and reproducibility across microarray platforms
-
Larkin J.E., Frank B.C., Gavras H., Sultano R., and Quackenbush J. Independence and reproducibility across microarray platforms. Nature Methods 2 (2005) 337-344
-
(2005)
Nature Methods
, vol.2
, pp. 337-344
-
-
Larkin, J.E.1
Frank, B.C.2
Gavras, H.3
Sultano, R.4
Quackenbush, J.5
-
19
-
-
2442704146
-
Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction
-
Lyng H., Badiee A., Svendsrud D.H., Hovig E., Myklebost O., and Stokke T. Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction. BMC Genom. 5 (2004) 1-10
-
(2004)
BMC Genom.
, vol.5
, pp. 1-10
-
-
Lyng, H.1
Badiee, A.2
Svendsrud, D.H.3
Hovig, E.4
Myklebost, O.5
Stokke, T.6
-
20
-
-
0347449380
-
Photostability of Cy3 and Cy5-labeled DNA in the presence of metallic silver particles
-
Malicka J., Gryczynski I., Fang J., Kusba J., and Lakowicz J.R. Photostability of Cy3 and Cy5-labeled DNA in the presence of metallic silver particles. J. Fluoresc. 12 (2002) 439-447
-
(2002)
J. Fluoresc.
, vol.12
, pp. 439-447
-
-
Malicka, J.1
Gryczynski, I.2
Fang, J.3
Kusba, J.4
Lakowicz, J.R.5
-
21
-
-
0037441853
-
Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays
-
Martinez M.J., Aragon A.D., Rodriguez A.L., Weber J.M., Timlin J.A., Sinclair M.B., Haaland D.M., and Werner-Washburne M. Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays. Nucleic Acids Res. 31 (2003) e18
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Martinez, M.J.1
Aragon, A.D.2
Rodriguez, A.L.3
Weber, J.M.4
Timlin, J.A.5
Sinclair, M.B.6
Haaland, D.M.7
Werner-Washburne, M.8
-
22
-
-
0042353907
-
The power and prospects of fluorescence microscopies and spectroscopies
-
Michalet X., Kapanidis A.N., Laurence T., Pinaud F., Doose S., Pfughoefft M., and Weiss S. The power and prospects of fluorescence microscopies and spectroscopies. Annu. Rev. Biophys. Biomol. Struct. 32 (2003) 161-182
-
(2003)
Annu. Rev. Biophys. Biomol. Struct.
, vol.32
, pp. 161-182
-
-
Michalet, X.1
Kapanidis, A.N.2
Laurence, T.3
Pinaud, F.4
Doose, S.5
Pfughoefft, M.6
Weiss, S.7
-
23
-
-
33747883252
-
Microarray quality control
-
Minor J.M. Microarray quality control. Methods Enzymol. 411 (2006) 233-255
-
(2006)
Methods Enzymol.
, vol.411
, pp. 233-255
-
-
Minor, J.M.1
-
24
-
-
33747818626
-
Optimizing experiment and analysis parameters for spotted microarrays
-
Neal S.J., and Westwood T. Optimizing experiment and analysis parameters for spotted microarrays. Methods Enzymol. 410 (2006) 203-221
-
(2006)
Methods Enzymol.
, vol.410
, pp. 203-221
-
-
Neal, S.J.1
Westwood, T.2
-
25
-
-
0035163623
-
Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays
-
Nelson B.P., Grimsrud T.E., Liles M.R., Goodman R.M., and Corn R.M. Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal. Chem. 73 (2001) 1-7
-
(2001)
Anal. Chem.
, vol.73
, pp. 1-7
-
-
Nelson, B.P.1
Grimsrud, T.E.2
Liles, M.R.3
Goodman, R.M.4
Corn, R.M.5
-
26
-
-
12244284624
-
DNA microarray experiments: Biological and technological aspects
-
Nguyen D.V., Bulak Arpat A., Wang N., and Carroll R.J. DNA microarray experiments: Biological and technological aspects. Biometrics 58 (2002) 701-717
-
(2002)
Biometrics
, vol.58
, pp. 701-717
-
-
Nguyen, D.V.1
Bulak Arpat, A.2
Wang, N.3
Carroll, R.J.4
-
27
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush J. Computational analysis of microarray data. Nature Rev. Genet. 2 (2001) 418-427
-
(2001)
Nature Rev. Genet.
, vol.2
, pp. 418-427
-
-
Quackenbush, J.1
-
28
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush J. Microarray data normalization and transformation. Nature Genet. 32 (2002)
-
(2002)
Nature Genet.
, vol.32
-
-
Quackenbush, J.1
-
30
-
-
0003527697
-
DNA microarrays: A practical approach
-
Hames B.D. (Ed), Oxford University Press, Oxford
-
Schena M. DNA microarrays: A practical approach. In: Hames B.D. (Ed). "The Practical Approach Series" (1999), Oxford University Press, Oxford 210
-
(1999)
"The Practical Approach Series"
, pp. 210
-
-
Schena, M.1
-
33
-
-
0002251604
-
Confocal scanning microscopy in microarray detection
-
Shena M. (Ed), Oxford University Press, Oxford
-
Schermer M.J. Confocal scanning microscopy in microarray detection. In: Shena M. (Ed). "DNA Microarrays: A Practical Approach" (1999), Oxford University Press, Oxford 17-42
-
(1999)
"DNA Microarrays: A Practical Approach"
, pp. 17-42
-
-
Schermer, M.J.1
-
34
-
-
0034656561
-
Normalization strategies for cDNA microarrays
-
Schuchhardt J., Beule D., Malik A., Wolski E., Eickhoff H., Lehrach H., and Herzel H. Normalization strategies for cDNA microarrays. Nucleic Acids Res. 28 (2000) e47
-
(2000)
Nucleic Acids Res.
, vol.28
-
-
Schuchhardt, J.1
Beule, D.2
Malik, A.3
Wolski, E.4
Eickhoff, H.5
Lehrach, H.6
Herzel, H.7
-
35
-
-
0042641522
-
Hyperspectral imaging: A novel approach for microscopic analysis
-
Schultz R.A., Nielsen T., Zavaleta J.R., Ruch R., Wyatt R., Garner H., and R. Hyperspectral imaging: A novel approach for microscopic analysis. Cytometry 43 (2001) 239-247
-
(2001)
Cytometry
, vol.43
, pp. 239-247
-
-
Schultz, R.A.1
Nielsen, T.2
Zavaleta, J.R.3
Ruch, R.4
Wyatt, R.5
Garner, H.,R.6
-
36
-
-
11144267737
-
Improved monomeric red, orange, and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
-
Shaner N.C., Campbell R.E., Steinbach P.A., Giempmans B.N.G., Palmer A.E., and Tsien R.Y. Improved monomeric red, orange, and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nature Biotechnol. 22 (2004) 1567-1572
-
(2004)
Nature Biotechnol.
, vol.22
, pp. 1567-1572
-
-
Shaner, N.C.1
Campbell, R.E.2
Steinbach, P.A.3
Giempmans, B.N.G.4
Palmer, A.E.5
Tsien, R.Y.6
-
37
-
-
1942519235
-
Design, construction, characterization, and application of a hyperspectral microarray scanner
-
Sinclair M.B., Timlin J.A., Haaland D.M., and Werner-Washburne M. Design, construction, characterization, and application of a hyperspectral microarray scanner. Appl. Opt. 43 (2004) 2079-2089
-
(2004)
Appl. Opt.
, vol.43
, pp. 2079-2089
-
-
Sinclair, M.B.1
Timlin, J.A.2
Haaland, D.M.3
Werner-Washburne, M.4
-
39
-
-
25444469433
-
Hyperspectral microarray scanning: Impact on the accuracy and reliability of gene expression data
-
Timlin J.A., Sinclair M.B., Haaland D.M., Aragon A.D., Martinez M.J., and Werner-Washburne M. Hyperspectral microarray scanning: Impact on the accuracy and reliability of gene expression data. BMC Genom. 6 (2005)
-
(2005)
BMC Genom.
, vol.6
-
-
Timlin, J.A.1
Sinclair, M.B.2
Haaland, D.M.3
Aragon, A.D.4
Martinez, M.J.5
Werner-Washburne, M.6
-
40
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
Tseng G.C., Oh M., Rohlin L., Liao J.C., and Wong W.H. Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res. 29 (2001) 2549-2557
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
41
-
-
2942752315
-
Cross-talk correction in dual labeled fluorescent microarray scanning
-
Wang L., Lu Z., and Ni X. Cross-talk correction in dual labeled fluorescent microarray scanning. Chin. Opt. Lett. 2 (2004) 162-164
-
(2004)
Chin. Opt. Lett.
, vol.2
, pp. 162-164
-
-
Wang, L.1
Lu, Z.2
Ni, X.3
-
42
-
-
0035914537
-
Chemometric strategies for normalisation of gene expression data obtained from cDNA microarrays
-
Wu W., Wildsmith S.E., Winkley A.J., Yallop R., Elcock F.J., and Bugelski P.J. Chemometric strategies for normalisation of gene expression data obtained from cDNA microarrays. Anal. Chim. Acta 446 (2001) 451-466
-
(2001)
Anal. Chim. Acta
, vol.446
, pp. 451-466
-
-
Wu, W.1
Wildsmith, S.E.2
Winkley, A.J.3
Yallop, R.4
Elcock, F.J.5
Bugelski, P.J.6
-
43
-
-
0003576795
-
-
University of California, Berkeley
-
Yang Y.H., Buckley M.J., Dudoit S., and Speed T.P. "Comparison of Methods for Image Analysis on cDNA Microarray Data," (2000), University of California, Berkeley 40
-
(2000)
"Comparison of Methods for Image Analysis on cDNA Microarray Data,"
, pp. 40
-
-
Yang, Y.H.1
Buckley, M.J.2
Dudoit, S.3
Speed, T.P.4
|