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Volumn 411, Issue , 2006, Pages 79-98

[6] Scanning Microarrays: Current Methods and Future Directions

(1)  Timlin, Jerilyn A a  

a NONE

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

EID: 33747868133     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(06)11006-X     Document Type: Review
Times cited : (25)

References (44)
  • 2
    • 0041660936 scopus 로고    scopus 로고
    • Spurious spatial periodicity of co-expression in microarray data due to printing design
    • Balazsi G., Kay K.A., Barabasi A.-L., and Oltvai Z.N. Spurious spatial periodicity of co-expression in microarray data due to printing design. Nucleic Acids Res. 31 (2003) 4425-4433
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4425-4433
    • Balazsi, G.1    Kay, K.A.2    Barabasi, A.-L.3    Oltvai, Z.N.4
  • 3
    • 33747884345 scopus 로고    scopus 로고
    • Gene expression omnibus: Microarray data storage, submission, retrieval, and analysis
    • Barrett T., and Edgar R. Gene expression omnibus: Microarray data storage, submission, retrieval, and analysis. Methods Enzymol. 411 (2006) 352-369
    • (2006) Methods Enzymol. , vol.411 , pp. 352-369
    • Barrett, T.1    Edgar, R.2
  • 4
    • 13244260827 scopus 로고    scopus 로고
    • Calibration and assessment of channel-specific biases in microarray data with extended dynamic range
    • Bengtsson H., Jonsson G., and Vallon-Christersson J. Calibration and assessment of channel-specific biases in microarray data with extended dynamic range. BMC Bioinform. 5 (2004)
    • (2004) BMC Bioinform. , vol.5
    • Bengtsson, H.1    Jonsson, G.2    Vallon-Christersson, J.3
  • 6
    • 0035979269 scopus 로고    scopus 로고
    • Image metrics in the statistical analysis of DNA microarray data
    • Brown C.S., Goodwin P.C., and Sorger P.K. Image metrics in the statistical analysis of DNA microarray data. Proc. Natl. Acad. Sci. USA 98 (2001) 8944-8949
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 8944-8949
    • Brown, C.S.1    Goodwin, P.C.2    Sorger, P.K.3
  • 7
    • 33747839776 scopus 로고    scopus 로고
    • Sample labeling: An overview
    • Brownstein M. Sample labeling: An overview. Methods Enzymol. 410 (2006) 222-237
    • (2006) Methods Enzymol. , vol.410 , pp. 222-237
    • Brownstein, M.1
  • 8
    • 0037253089 scopus 로고    scopus 로고
    • Protein arrays: The current state-of-the-art
    • Cutler P. Protein arrays: The current state-of-the-art. Proteomics 3 (2003) 3
    • (2003) Proteomics , vol.3 , pp. 3
    • Cutler, P.1
  • 9
    • 0037188477 scopus 로고    scopus 로고
    • Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range
    • Dudley A.M., Aach J., Steffen M.A., and Church G.M. Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range. Proc. Natl. Acad. Sci. 99 (2002) 7554-7559
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 7554-7559
    • Dudley, A.M.1    Aach, J.2    Steffen, M.A.3    Church, G.M.4
  • 11
    • 0242321072 scopus 로고    scopus 로고
    • Comparison of fluorescence and resonance light scattering for highly sensitive microarray detection of bacterial pathogens
    • Francois P., Bento M., Vaudaux P., and Schrenzel J. Comparison of fluorescence and resonance light scattering for highly sensitive microarray detection of bacterial pathogens. J. Microbiol. Methods 55 (2003) 755-762
    • (2003) J. Microbiol. Methods , vol.55 , pp. 755-762
    • Francois, P.1    Bento, M.2    Vaudaux, P.3    Schrenzel, J.4
  • 12
    • 0242579852 scopus 로고    scopus 로고
    • Protein and antibody microarray technology
    • Gloekler J., and Angenendt P. Protein and antibody microarray technology. J. Chromatogr. B 797 (2003) 229
    • (2003) J. Chromatogr. B , vol.797 , pp. 229
    • Gloekler, J.1    Angenendt, P.2
  • 15
    • 0037225720 scopus 로고    scopus 로고
    • Quantum dots finally come of age
    • Jovin T.M. Quantum dots finally come of age. Nature Biotechnol. 21 (2003) 32-33
    • (2003) Nature Biotechnol. , vol.21 , pp. 32-33
    • Jovin, T.M.1
  • 16
    • 0035032570 scopus 로고    scopus 로고
    • Statistical design and the analysis of gene expression microarray data
    • Kerr M.K., and Churchill G.A. Statistical design and the analysis of gene expression microarray data. Genet. Res. 77 (2001) 123-128
    • (2001) Genet. Res. , vol.77 , pp. 123-128
    • Kerr, M.K.1    Churchill, G.A.2
  • 17
    • 0037326065 scopus 로고    scopus 로고
    • Automated analysis of SEM X-Ray spectral images: A powerful new microanalysis tool
    • Kotula P.G., Keenan M.R., and Michael J.R. Automated analysis of SEM X-Ray spectral images: A powerful new microanalysis tool. Microsc. Microanal. 9 (2003) 1-17
    • (2003) Microsc. Microanal. , vol.9 , pp. 1-17
    • Kotula, P.G.1    Keenan, M.R.2    Michael, J.R.3
  • 19
    • 2442704146 scopus 로고    scopus 로고
    • Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction
    • Lyng H., Badiee A., Svendsrud D.H., Hovig E., Myklebost O., and Stokke T. Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction. BMC Genom. 5 (2004) 1-10
    • (2004) BMC Genom. , vol.5 , pp. 1-10
    • Lyng, H.1    Badiee, A.2    Svendsrud, D.H.3    Hovig, E.4    Myklebost, O.5    Stokke, T.6
  • 20
    • 0347449380 scopus 로고    scopus 로고
    • Photostability of Cy3 and Cy5-labeled DNA in the presence of metallic silver particles
    • Malicka J., Gryczynski I., Fang J., Kusba J., and Lakowicz J.R. Photostability of Cy3 and Cy5-labeled DNA in the presence of metallic silver particles. J. Fluoresc. 12 (2002) 439-447
    • (2002) J. Fluoresc. , vol.12 , pp. 439-447
    • Malicka, J.1    Gryczynski, I.2    Fang, J.3    Kusba, J.4    Lakowicz, J.R.5
  • 23
    • 33747883252 scopus 로고    scopus 로고
    • Microarray quality control
    • Minor J.M. Microarray quality control. Methods Enzymol. 411 (2006) 233-255
    • (2006) Methods Enzymol. , vol.411 , pp. 233-255
    • Minor, J.M.1
  • 24
    • 33747818626 scopus 로고    scopus 로고
    • Optimizing experiment and analysis parameters for spotted microarrays
    • Neal S.J., and Westwood T. Optimizing experiment and analysis parameters for spotted microarrays. Methods Enzymol. 410 (2006) 203-221
    • (2006) Methods Enzymol. , vol.410 , pp. 203-221
    • Neal, S.J.1    Westwood, T.2
  • 25
    • 0035163623 scopus 로고    scopus 로고
    • Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays
    • Nelson B.P., Grimsrud T.E., Liles M.R., Goodman R.M., and Corn R.M. Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal. Chem. 73 (2001) 1-7
    • (2001) Anal. Chem. , vol.73 , pp. 1-7
    • Nelson, B.P.1    Grimsrud, T.E.2    Liles, M.R.3    Goodman, R.M.4    Corn, R.M.5
  • 26
    • 12244284624 scopus 로고    scopus 로고
    • DNA microarray experiments: Biological and technological aspects
    • Nguyen D.V., Bulak Arpat A., Wang N., and Carroll R.J. DNA microarray experiments: Biological and technological aspects. Biometrics 58 (2002) 701-717
    • (2002) Biometrics , vol.58 , pp. 701-717
    • Nguyen, D.V.1    Bulak Arpat, A.2    Wang, N.3    Carroll, R.J.4
  • 27
    • 0035375137 scopus 로고    scopus 로고
    • Computational analysis of microarray data
    • Quackenbush J. Computational analysis of microarray data. Nature Rev. Genet. 2 (2001) 418-427
    • (2001) Nature Rev. Genet. , vol.2 , pp. 418-427
    • Quackenbush, J.1
  • 28
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush J. Microarray data normalization and transformation. Nature Genet. 32 (2002)
    • (2002) Nature Genet. , vol.32
    • Quackenbush, J.1
  • 30
    • 0003527697 scopus 로고    scopus 로고
    • DNA microarrays: A practical approach
    • Hames B.D. (Ed), Oxford University Press, Oxford
    • Schena M. DNA microarrays: A practical approach. In: Hames B.D. (Ed). "The Practical Approach Series" (1999), Oxford University Press, Oxford 210
    • (1999) "The Practical Approach Series" , pp. 210
    • Schena, M.1
  • 33
    • 0002251604 scopus 로고    scopus 로고
    • Confocal scanning microscopy in microarray detection
    • Shena M. (Ed), Oxford University Press, Oxford
    • Schermer M.J. Confocal scanning microscopy in microarray detection. In: Shena M. (Ed). "DNA Microarrays: A Practical Approach" (1999), Oxford University Press, Oxford 17-42
    • (1999) "DNA Microarrays: A Practical Approach" , pp. 17-42
    • Schermer, M.J.1
  • 36
    • 11144267737 scopus 로고    scopus 로고
    • Improved monomeric red, orange, and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
    • Shaner N.C., Campbell R.E., Steinbach P.A., Giempmans B.N.G., Palmer A.E., and Tsien R.Y. Improved monomeric red, orange, and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nature Biotechnol. 22 (2004) 1567-1572
    • (2004) Nature Biotechnol. , vol.22 , pp. 1567-1572
    • Shaner, N.C.1    Campbell, R.E.2    Steinbach, P.A.3    Giempmans, B.N.G.4    Palmer, A.E.5    Tsien, R.Y.6
  • 37
    • 1942519235 scopus 로고    scopus 로고
    • Design, construction, characterization, and application of a hyperspectral microarray scanner
    • Sinclair M.B., Timlin J.A., Haaland D.M., and Werner-Washburne M. Design, construction, characterization, and application of a hyperspectral microarray scanner. Appl. Opt. 43 (2004) 2079-2089
    • (2004) Appl. Opt. , vol.43 , pp. 2079-2089
    • Sinclair, M.B.1    Timlin, J.A.2    Haaland, D.M.3    Werner-Washburne, M.4
  • 40
    • 0035875553 scopus 로고    scopus 로고
    • Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
    • Tseng G.C., Oh M., Rohlin L., Liao J.C., and Wong W.H. Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res. 29 (2001) 2549-2557
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2549-2557
    • Tseng, G.C.1    Oh, M.2    Rohlin, L.3    Liao, J.C.4    Wong, W.H.5
  • 41
    • 2942752315 scopus 로고    scopus 로고
    • Cross-talk correction in dual labeled fluorescent microarray scanning
    • Wang L., Lu Z., and Ni X. Cross-talk correction in dual labeled fluorescent microarray scanning. Chin. Opt. Lett. 2 (2004) 162-164
    • (2004) Chin. Opt. Lett. , vol.2 , pp. 162-164
    • Wang, L.1    Lu, Z.2    Ni, X.3
  • 42
    • 0035914537 scopus 로고    scopus 로고
    • Chemometric strategies for normalisation of gene expression data obtained from cDNA microarrays
    • Wu W., Wildsmith S.E., Winkley A.J., Yallop R., Elcock F.J., and Bugelski P.J. Chemometric strategies for normalisation of gene expression data obtained from cDNA microarrays. Anal. Chim. Acta 446 (2001) 451-466
    • (2001) Anal. Chim. Acta , vol.446 , pp. 451-466
    • Wu, W.1    Wildsmith, S.E.2    Winkley, A.J.3    Yallop, R.4    Elcock, F.J.5    Bugelski, P.J.6


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