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Volumn 34, Issue WEB. SERV. ISS., 2006, Pages

transFold: A web server for predicting the structureand residue contacts of transmembrane beta-barrels

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; GLOBULAR PROTEIN; MEMBRANE PROTEIN; OUTER MEMBRANE PROTEIN; AMINO ACID;

EID: 33747860605     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl205     Document Type: Article
Times cited : (30)

References (11)
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    • A simple statistical method for discriminating outer membrane proteins with better accuracy
    • Gromiha,M.M. and Suwa,M. (2005) A simple statistical method for discriminating outer membrane proteins with better accuracy. Bioinformatics, 21, 961-968.
    • (2005) Bioinformatics , vol.21 , pp. 961-968
    • Gromiha, M.M.1    Suwa, M.2
  • 2
    • 23144463913 scopus 로고    scopus 로고
    • TMBETA-NET: Discrimination and prediction of membrane spanning beta-strands in outer membrane proteins
    • Gromiha,M.M., Ahmad,S. and Suwa,M. (2005) TMBETA-NET: discrimination and prediction of membrane spanning beta-strands in outer membrane proteins. Nucleic Acids Res., 33, W164-W167.
    • (2005) Nucleic Acids Res. , vol.33
    • Gromiha, M.M.1    Ahmad, S.2    Suwa, M.3
  • 4
    • 1842688091 scopus 로고    scopus 로고
    • Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins
    • Gromiha,M.M., Ahmad,S. and Suwa,M. (2004) Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins. J. Comput. Chem., 25, 762-767.
    • (2004) J. Comput Chem. , vol.25 , pp. 762-767
    • Gromiha, M.M.1    Ahmad, S.2    Suwa, M.3
  • 5
    • 2642587355 scopus 로고    scopus 로고
    • Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods
    • Natt,N.K., Kaur,H. and Raghava,G.P. (2004) Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods. Proteins, 56, 11-18.
    • (2004) Proteins , vol.56 , pp. 11-18
    • Natt, N.K.1    Kaur, H.2    Raghava, G.P.3
  • 6
    • 0041922339 scopus 로고    scopus 로고
    • A HMM-based method to predict the transmembrane regions of beta-barrel membrane proteins
    • Liu,Q., Zhu,Y.S., Wang,B.H. and Li,Y.X. (2003) A HMM-based method to predict the transmembrane regions of beta-barrel membrane proteins. Comput. Biol. Chem., 27, 69-76.
    • (2003) Comput. Biol. Chem. , vol.27 , pp. 69-76
    • Liu, Q.1    Zhu, Y.S.2    Wang, B.H.3    Li, Y.X.4
  • 7
    • 33748278030 scopus 로고    scopus 로고
    • Predicting transmembrane beta-barrels and Inter-strand residue contacts from sequence
    • (in press)
    • Waldispühl,J., Berger,B., Clote,P. and Steyaert,J.-M. (2006) Predicting transmembrane beta-barrels and Inter-strand residue contacts from sequence. Proteins (in press).
    • (2006) Proteins
    • Waldispühl, J.1    Berger, B.2    Clote, P.3    Steyaert, J.-M.4
  • 8
    • 17744373462 scopus 로고    scopus 로고
    • Modeling and predicting all-alpha transmembrane proteins including helix-helix pairing
    • Waldispühl,J. and Steyaert,J.-M. (2005) Modeling and predicting all-alpha transmembrane proteins including helix-helix pairing. Theor. Comput. Sci., 335, 67-92.
    • (2005) Theor. Comput. Sci. , vol.335 , pp. 67-92
    • Waldispühl, J.1    Steyaert, J.-M.2
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    • 23844520274 scopus 로고    scopus 로고
    • Wrap-and-Pack: A new paradigm for beta structural motif recognition with application to recognizing beta trefoils
    • Menke,M., King,J., Berger,B. and Cowen,L. (2005) Wrap-and-Pack: a new paradigm for beta structural motif recognition with application to recognizing beta trefoils. J. Comput. Biol., 12, 777-795.
    • (2005) J. Comput. Biol. , vol.12 , pp. 777-795
    • Menke, M.1    King, J.2    Berger, B.3    Cowen, L.4
  • 11
    • 7044247850 scopus 로고    scopus 로고
    • Folding and assembly of beta-barrel membrane proteins
    • Tamm,L.K., Hong,H. and Liang,B. (2004) Folding and assembly of beta-barrel membrane proteins. Biochim. Biophys. Acta, 1666, 250-263.
    • (2004) Biochim. Biophys. Acta , vol.1666 , pp. 250-263
    • Tamm, L.K.1    Hong, H.2    Liang, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.