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Volumn 34, Issue WEB. SERV. ISS., 2006, Pages

Stubb: A program for discovery and analysis of cis-regulatory modules

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; TRANSCRIPTION FACTOR;

EID: 33747853888     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl224     Document Type: Article
Times cited : (47)

References (11)
  • 2
    • 0037154273 scopus 로고    scopus 로고
    • Exploiting transcription factor binding site clustering to identify cis-Regulatory modules involved in pattern formation in the Drosophila genome
    • Berman,B.P., Nibu,Y., Pfeiffer,B.D., Tomancak,P., Celniker,S.E., Levine,M., Rubin,G.M. and Eisen,M.B. (2002) Exploiting transcription factor binding site clustering to identify cis-Regulatory modules involved in pattern formation in the Drosophila genome. Proc. Natl Acad. Sci. USA, 99, 757-762.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 757-762
    • Berman, B.P.1    Nibu, Y.2    Pfeiffer, B.D.3    Tomancak, P.4    Celniker, S.E.5    Levine, M.6    Rubin, G.M.7    Eisen, M.B.8
  • 3
    • 0036067977 scopus 로고    scopus 로고
    • Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model
    • Halfon,M.S., Grad,Y., Church,G.M. and Michelson,A.M. (2002) Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model. Genome Res., 12, 1019-1028.
    • (2002) Genome Res. , vol.12 , pp. 1019-1028
    • Halfon, M.S.1    Grad, Y.2    Church, G.M.3    Michelson, A.M.4
  • 4
    • 0034777594 scopus 로고    scopus 로고
    • Detection of cis-element clusters in higher eukaryotic DNA
    • Frith,M.C., Hansen,U. and Weng,Z. (2001) Detection of cis-element clusters in higher eukaryotic DNA. Bioinformatics, 17, 878-889.
    • (2001) Bioinformatics , vol.17 , pp. 878-889
    • Frith, M.C.1    Hansen, U.2    Weng, Z.3
  • 5
    • 2942576308 scopus 로고    scopus 로고
    • Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo
    • Rajewsky,N., Vergassola,M., Gaul,U. and Siggia,E.D. (2002) Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo. BMC Bioinformatics, 3, 30.
    • (2002) BMC Bioinformatics , vol.3 , pp. 30
    • Rajewsky, N.1    Vergassola, M.2    Gaul, U.3    Siggia, E.D.4
  • 6
    • 1042264827 scopus 로고    scopus 로고
    • A probabilistic method to detect regulatory modules
    • Sinha,S., van Nimwegen,E. and Siggia,E.D. (2003) A probabilistic method to detect regulatory modules. Bioinformatics, 19, i292-i301.
    • (2003) Bioinformatics , vol.19
    • Sinha, S.1    van Nimwegen, E.2    Siggia, E.D.3
  • 7
    • 25444517056 scopus 로고    scopus 로고
    • MAPPER: A search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    • Marinescu,V.D., Kohane,I.S. and Riva,A. (2005) MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes. BMC Bioinformatics, 6, 79.
    • (2005) BMC Bioinformatics , vol.6 , pp. 79
    • Marinescu, V.D.1    Kohane, I.S.2    Riva, A.3
  • 8
    • 13244271362 scopus 로고    scopus 로고
    • Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
    • Sinha,S., Schroeder,M.D., Unnerstall,U., Gaul,U. and Siggia,E.D. (2004) Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila. BMC Bioinformatics, 5, 129.
    • (2004) BMC Bioinformatics , vol.5 , pp. 129
    • Sinha, S.1    Schroeder, M.D.2    Unnerstall, U.3    Gaul, U.4    Siggia, E.D.5
  • 9
    • 33749551635 scopus 로고    scopus 로고
    • Evolution of cis-regulatory modules in the segmentation gene network
    • In San Diego
    • Sinha et al. (2005) Evolution of cis-regulatory modules in the segmentation gene network. In Proceedings of the 46th Annual Drosophila Research Conference. San Diego, p. 101.
    • (2005) Proceedings of the 46th Annual Drosophila Research Conference , pp. 101
    • Sinha1
  • 10
    • 17444402501 scopus 로고    scopus 로고
    • Drosophila DNase I footprint database: A systematic genome annotation of transcription factor binding sites in the fruitfly, D.melanogaster
    • Bergman,C.M., Carlson,J.W. and Celniker,S.E. (2005) Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, D.melanogaster. Bioinformatics, 21, 1747-1749.
    • (2005) Bioinformatics , vol.21 , pp. 1747-1749
    • Bergman, C.M.1    Carlson, J.W.2    Celniker, S.E.3
  • 11
    • 0037398368 scopus 로고    scopus 로고
    • LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA
    • and NISC Comparative Sequencing Program
    • Brudno,M., Do,C.B., Cooper,G.M., Kim,M.F., Davydov,E., Green,E.D., Sidow,A., Batzoglou,S. and NISC Comparative Sequencing Program. (2003) LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res., 13, 721-731.
    • (2003) Genome Res. , vol.13 , pp. 721-731
    • Brudno, M.1    Do, C.B.2    Cooper, G.M.3    Kim, M.F.4    Davydov, E.5    Green, E.D.6    Sidow, A.7    Batzoglou, S.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.