-
1
-
-
13244260827
-
Calibration and assessment of channel-specific biases in microarray data with extended dynamical range
-
Bengtsson H., Jonsson G., and Vallon-Christersson J. Calibration and assessment of channel-specific biases in microarray data with extended dynamical range. BMC Bioinformatics 5 (2004) 177
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 177
-
-
Bengtsson, H.1
Jonsson, G.2
Vallon-Christersson, J.3
-
2
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
Chomczynski P., and Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162 (1987) 156-159
-
(1987)
Anal. Biochem.
, vol.162
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
3
-
-
0036900895
-
Fundamentals of experimental design for cDNA microarrays
-
Churchill GA. Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32 Suppl. (2002) 490-495
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL
, pp. 490-495
-
-
Churchill, GA.1
-
5
-
-
0035165304
-
Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays
-
1184, 1186 passim
-
Evertsz E.M., Au-Young J., Ruvolo M.V., Lim A.C., and Reynolds M.A. Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays. Biotechniques 31 (2001) 1182, 1184, 1186 passim
-
(2001)
Biotechniques
, vol.31
, pp. 1182
-
-
Evertsz, E.M.1
Au-Young, J.2
Ruvolo, M.V.3
Lim, A.C.4
Reynolds, M.A.5
-
6
-
-
0033818954
-
A concise guide to cDNA microarray analysis
-
552-554, 556 passim
-
Hedge P., Qi R., Abernathy K., Gay C., Dharap S., Gaspard R., Hughes J.E., Snesrud E., Lee N., and Quackenbush J. A concise guide to cDNA microarray analysis. Biotechniques 29 (2000) 548-550 552-554, 556 passim
-
(2000)
Biotechniques
, vol.29
, pp. 548-550
-
-
Hedge, P.1
Qi, R.2
Abernathy, K.3
Gay, C.4
Dharap, S.5
Gaspard, R.6
Hughes, J.E.7
Snesrud, E.8
Lee, N.9
Quackenbush, J.10
-
7
-
-
0035733752
-
The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
-
Jin W., Riley R.M., Wolfinger R.D., White K.P., Passador-Gurgel G., and Gibson G. The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat. Genet. 29 (2001) 389-395
-
(2001)
Nat. Genet.
, vol.29
, pp. 389-395
-
-
Jin, W.1
Riley, R.M.2
Wolfinger, R.D.3
White, K.P.4
Passador-Gurgel, G.5
Gibson, G.6
-
8
-
-
4644280145
-
FlyGEM, a full transcriptome array platform for the Drosophila community
-
Johnston R., Wang B., Nuttall R., Doctolero M., Edwards P., Lu J., Vainer M., Yue H., Wang X., Minor J., Chan C., Lash A., Goralski T., Parisi M., Oliver B., and Eastman S. FlyGEM, a full transcriptome array platform for the Drosophila community. Genome. Biol. 5 (2004) R19
-
(2004)
Genome. Biol.
, vol.5
-
-
Johnston, R.1
Wang, B.2
Nuttall, R.3
Doctolero, M.4
Edwards, P.5
Lu, J.6
Vainer, M.7
Yue, H.8
Wang, X.9
Minor, J.10
Chan, C.11
Lash, A.12
Goralski, T.13
Parisi, M.14
Oliver, B.15
Eastman, S.16
-
9
-
-
0035032570
-
Statistical design and the analysis of gene expression microarray data
-
Kerr M.K., and Churchill G.A. Statistical design and the analysis of gene expression microarray data. Genet. Res. 77 (2001) 123-128
-
(2001)
Genet. Res.
, vol.77
, pp. 123-128
-
-
Kerr, M.K.1
Churchill, G.A.2
-
10
-
-
2442704146
-
Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction
-
Lyng H., Badiee A., Svendsrud D.H., Hovig E., Myklebost O., and Stokke T. Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction. BMC Genomics 5 (2004) 10
-
(2004)
BMC Genomics
, vol.5
, pp. 10
-
-
Lyng, H.1
Badiee, A.2
Svendsrud, D.H.3
Hovig, E.4
Myklebost, O.5
Stokke, T.6
-
11
-
-
0037441853
-
Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays
-
Martinez M.J., Aragon A.D., Rodriguez A.L., Weber J.M., Timlin J.A., Sinclair M.B., Haaland D.M., and Werner-Washburne M. Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays. Nucleic Acids Res. 31 (2003) e18
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Martinez, M.J.1
Aragon, A.D.2
Rodriguez, A.L.3
Weber, J.M.4
Timlin, J.A.5
Sinclair, M.B.6
Haaland, D.M.7
Werner-Washburne, M.8
-
12
-
-
0345358575
-
Construction of a cDNA-based microarray for Drosophila melanogaster: A comparison of gene transcription profiles from SL2 and Kc167 cells
-
Neal S.J., Gibson M.L., So A.K., and Westwood J.T. Construction of a cDNA-based microarray for Drosophila melanogaster: A comparison of gene transcription profiles from SL2 and Kc167 cells. Genome 46 (2003) 879-892
-
(2003)
Genome
, vol.46
, pp. 879-892
-
-
Neal, S.J.1
Gibson, M.L.2
So, A.K.3
Westwood, J.T.4
-
13
-
-
0034983263
-
Reliability of mRNA profiling: Verification for samples with different complexities
-
Pradet-Balade B., Boulme F., Mullner E.W., and Garcia-Sanz J.A. Reliability of mRNA profiling: Verification for samples with different complexities. Biotechniques 30 (2001) 1352-1357
-
(2001)
Biotechniques
, vol.30
, pp. 1352-1357
-
-
Pradet-Balade, B.1
Boulme, F.2
Mullner, E.W.3
Garcia-Sanz, J.A.4
-
14
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush J. Microarray data normalization and transformation. Nat. Genet. 32 Suppl. (2002) 496-501
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL
, pp. 496-501
-
-
Quackenbush, J.1
-
15
-
-
0035755549
-
Analysis of large-scale gene expression data
-
Sherlock G. Analysis of large-scale gene expression data. Brief Bioinform. 2 (2001) 350-362
-
(2001)
Brief Bioinform.
, vol.2
, pp. 350-362
-
-
Sherlock, G.1
-
16
-
-
27644507562
-
Microarray scanner calibration curves: Characteristics and implications
-
Shi L., Tong W., Su Z., Han T., Han J., Puri R.K., Fang H., Frueh F.W., Goodsaid F.M., Guo L., Branham W.S., Chen J.J., Xu Z.A., Harris S.C., Hong H., Xie Q., Perkins R.G., and Fuscoe J.C. Microarray scanner calibration curves: Characteristics and implications. BMC Bioinformatics 6 Suppl. 2 (2005) S11
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 2
-
-
Shi, L.1
Tong, W.2
Su, Z.3
Han, T.4
Han, J.5
Puri, R.K.6
Fang, H.7
Frueh, F.W.8
Goodsaid, F.M.9
Guo, L.10
Branham, W.S.11
Chen, J.J.12
Xu, Z.A.13
Harris, S.C.14
Hong, H.15
Xie, Q.16
Perkins, R.G.17
Fuscoe, J.C.18
-
17
-
-
33747868133
-
Scanning microarrays: Current methods and future directions
-
Timlin J.A. Scanning microarrays: Current methods and future directions. Methods Enzymol. 411 (2006) 79-98
-
(2006)
Methods Enzymol.
, vol.411
, pp. 79-98
-
-
Timlin, J.A.1
-
18
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher V.G., Tibshirani R., and Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 98 (2001) 5116-5121
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
19
-
-
0037200201
-
A new non-linear normalization method for reducing variability in DNA microarray experiments
-
research 0048
-
Workman C., Jensen L.J., Jarmer H., Berka R., Gautier L., Nielser H.B., Saxild H.H., Nielsen C., Brunak S., and Knudsen S. A new non-linear normalization method for reducing variability in DNA microarray experiments. Genome. Biol. 3 (2002), research 0048
-
(2002)
Genome. Biol.
, vol.3
-
-
Workman, C.1
Jensen, L.J.2
Jarmer, H.3
Berka, R.4
Gautier, L.5
Nielser, H.B.6
Saxild, H.H.7
Nielsen, C.8
Brunak, S.9
Knudsen, S.10
-
21
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang Y.H., Dudoit S., Luu P., Lin D.M., Peng V., Ngai J., and Speed T.P. Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30 (2002) e15
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
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