Characterizing Nali and Chokla sheep differentiation with microsatellite markers

Small Ruminant Research

Volumn 65, Issue 3, 2006, Pages 185-192

  Sodhi, M ^a   Mukesh, M ^a   Bhatia, S ^a  

^a NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES   (India)

Author keywords

Characterization; DNA microsatellite; Genetic diversity; Indian native breeds; Nali and Chokla sheep

Indexed keywords

OVIS; OVIS ARIES;

EID: 33747752865     PISSN: 09214488     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.smallrumres.2005.04.032     Document Type: Article

References (46)

1. Acharya R.M. Sheep and Goat Breeds of India. FAO Animal Production and Health Paper 30 (1982), FAO, United Nations, Rome, Italy pp. 1-190
2. Arora R., and Bhatia S. Genetic structure of Muzzafarnagri sheep based on microsatellite analysis. Small Rumin. Res. 54 (2004) 227-230
3. Arranz J.J., Bayon Y., and San Primitivo F. Genetic relationships among Spanish sheep using microsatellites. Anim. Genet. 29 (1998) 435-440
4. Arranz J.J., Bayon Y., and San Primitivo F. Genetic variation at microsatellite loci in Spanish sheep. Small Rumin. Res. 39 (2001) 3-10
5. Barker J.S.F. A global protocol for determining genetic distances among domestic livestock breeds. Proceedings of the Fifth World Congress on Genetics Applied to Livestock Production, vol. 21 (1994) 501-508
6. Barker J.S.F., Moore S.S., Hetzel D.J.S., Evans D., Tan S.G., and Byrne K. Genetic diversity of Asian water buffalo (Bubalus bubalis): microsatellite variation and a comparison with protein coding loci. Anim. Genet. 28 (1997) 103-115
7. Barker J.S.F., Tan S.G., Moore S.S., Mukherjee T.K., Matheson J.L., and Selvaraj O.S. Genetic variation within and relationships among populations of Asian goats. J. Anim. Breed. 118 213 (2001) 233
8. Bassam J.B., Caetano-Anolles G., and Gresshoff P.M. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal. Biochem. 196 (1991) 82-83
9. Beja-Pereira A., Alexandrino P., Bessa I., Carretero Y., Dunner S., Ferrand N., Jordana J., Laloe D., Moazami-Goudarzi K., Sanchez A., and Cañón J. Genetic characterization of Southwestern European bovine breeds: a historical and biogeographical reassessment with a set of 16 microsatellites. J. Hered. 94 3 (2003) 243-250
10. Botstein D., White R.L., Skolnick M., and Davis R.W. Construction of genetic linkage maps in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32 (1980) 314-331
11. Buchanan F.C., Adams L.J., Littlejohn R.P., Madox J.F., and Crawford A.M. Determination of evolutionary relationships among sheep breeds using microsatellites. Genomics 22 (1994) 397-403
12. Cañón J., Checa M.N., Carleos C., Wega-Pla J.L., Vallejo M., and Dunner S. The genetic structure of Spanish Celtic horse breeds inferred from microsatellite data. Anim. Genet. 31 (2000) 39-48
13. Cornuet J.M., Piry S., Luikart G., Estoup A., and Solinac M. New methods employing multilocus genotypes to select or exclude populations as origin of individuals. Genetics 153 (1999) 1989-2000
14. Crawford A.M., Dodds K.G., Ede A.J., Pierson C.A., Montgomery G.W., Garmonsway H.G., Beattie A.E., et al. An autosomal genetic linkage map of the sheep genome. Genetics 140 (1995) 703-724
15. Diez-Tascon C., Littlejohn R.P., Imeida P.A.R., and Crawford A.M. Genetic variation within the Merino sheep breed: analysis of closely related populations using microsatellites. Anim. Genet. 31 (2000) 43-51
16. FAO, 1996. Global Project for the Maintenance of Domestic Animal Genetic Diversity (MoDAD). http://www.fao.org/dad-is/.
17. FAO, 1998. FAO. Data Bank, Rome, Italy.
18. FAO, 2001. Sheep Husbandry and Ethno Veterinary Knowledge of Sheep Pastoralists in Rajasthan. http://www.pastoralpeoples.org/docs/eg07.
19. Forbes S.H., Hogg J.T., Buchanan F.C., Crawford A.M., and Allenford F.W. Microsatellite evolution in congeneric mammals: domestic and bighorn sheep. Mol. Biol. Evol. 12 (1995) 1106-1113
20. Gatenby, 1991. Sheep Husbandry and Ethno Veterinary Knowledge of Sheep Pastoralists in Rajasthan. http://www.pastoralpeoples.org/docs/eg07.
21. Goudet J. FSTAT Computer Package for PCs (2002), Institute of Ecology, UNIL, Lausanne, Switzerland
22. Hartl D. Principles of Population Genetics (1980), Sinauer Associates Inc., Sunderland, Massachusetts, USA pp. 164-165
23. Hochberg Y. A sharper Bonferroni procedure for multiple tests of significance. Biometrika 75 (1988) 800-802
24. Jordana J., Piedrafita J., Sanchez A., and Puig P. Comparative F statistics analysis of the genetic structure of ten Spanish dog breeds. J. Hered. 83 (1992) 367-374
25. Jordana J., Alexandrino P., Beja-Pereira A., Bessa I., Cañón J., Carretero Y., Dunner S., Laloë D., Moazami-Goudarzi K., Sanchez A., and Ferrand N. Genetic structure of eighteen local South European beef cattle breeds by comparative F-statistics analysis. J. Anim. Breed. Genet. 120 (2003) 73-87
26. Kayang B.B., Inoue-Murayama M., Hoshi T., Matsuo K., Takahashi H., Minezawa M., Mizutani M., and Ito S. Microsatellite loci in Japanese quail and cross-species amplification in chicken and guinea fowl. Genet. Sel. E 34 (2002) 233-253
27. Kim K.S., Yeo J.S., Lee J.W., Kim J.W., and Choi C.B. Genetic diversity of goats from Korea and China using microsatellite analysis. Asian-Aust. J. Anim. Sci. 15 (2002) 461-465
28. Li X., Li K., Fan B., Gong Y., Zhao S., Peng Z., and Liu B. The genetic diversity of seven pig breeds in China estimated by means of microsatellites. Asian-Aust. J. Anim. Sci. 13 (2000) 1193-1195
29. MacHugh D.E., Loftus R.T., Cunningham P., and Bradley D.G. Genetic structure of seven European cattle breeds assessed using 20 microsatellite markers. Anim. Genet. 29 (1998) 333-340
30. Mason I.L. Classification and distribution of sheep breeds. In: Maijala K. (Ed). World Animal Science (1991), Elsevier, Amsterdam 179-193
31. Moazami-Goudarzi K., Laloe D., Furet J.P., and Grosclaude F. Analysis of genetic relationships between 10 cattle breeds with 17 microsatellites. Anim. Genet. 30 (1997) 338-345
32. Mukesh M., Sodhi M., Bhatia S., and Mishra B.P. Genetic diversity of Indian native cattle breeds as analysed with 20 microsatellite loci. J. Anim. Breed. Genet. 121 6 (2004) 416-424
33. Nei M. Genetic distance between populations. Am. Nat. 106 (1972) 283-292
34. Nei M., Tajima F., and Tateno Y. Accuracy of estimated phylogenetic trees from molecular data. J. Mol. Evol. 19 (1983) 153-170
35. Nei M. Molecular Evolutionary Genetics (1987), Columbia University Press, New York
36. Nei M., and Roychaudhary A.K. Genetic relationship and evolution of human races. Evol. Biol. 14 (1982) 1-59
37. Ota T. DISPAN: Genetic Distance and Phylogenetic Analysis (1993), Institute of Molecular Evolutionary Genetics, Pennsylvania, State University, PA, USA
38. Rannala B., and Mountain J.L. Detecting immigration by multi-locus genotypes. Proc. Natl. Acad. Sci. U.S.A. 94 (1997) 9197-9201
39. Saitbekova N., Gaillord C., Obexer-Ruff G., and Dolf G. Genetic diversity in Swiss Goat breeds based on microsatellite analysis. Anim. Genet. 30 (1999) 36-41
40. Saitbekova N., Schlapfer J., Dolf G., and Gaillard C. Genetic relationships in Swiss sheep breeds based on microsatellite analysis. J. Anim. Breed. Genet. 118 (2001) 379-387
41. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual (1989), Cold Spring Harbour Laboratory Press, Cold Spring Harbour, NY
42. Sodhi M., Mukesh M., Arora R., Tantia M.S., and Bhatia S. Genetic structure of Garole-a unique Indian microsheep assessed using microsatellite markers. Indian J. Dairy Sci. 56 (2003) 167-173
43. Trexler J.C. Hierarchical organization of genetic variation in the Saifin Molly, Poecilia latipinna (pisces: Poeciliidae). Evolution 42 (1988) 995-1005
44. Weir B.S., and Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 38 (1984) 1358-1370
45. Yeh F.C., Boyle T., Rongcai Y., Ye Z., and Xian J.M. POPGENE Version 1.31. A Microsoft Window Based Freeware for Population Genetic Analysis (1999), University of Alberta, Edmonton
46. Zhou H., and Lamout S.J. Genetic characterization of biodiversity in highly inbred chicken by microsatellite markers. Anim. Genet. 30 (1999) 256-264