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Volumn 7, Issue , 2006, Pages

G-InforBIO: Integrated system for microbial genomics

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; GENE ANNOTATION; GENOME ANALYSIS; GENOMIC STUDIES; INTEGRATED ANALYSIS; INTEGRATED SYSTEMS; SEQUENCE ANALYSIS; SOFTWARE PROGRAM;

EID: 33747747025     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-368     Document Type: Article
Times cited : (8)

References (34)
  • 2
    • 0036087821 scopus 로고    scopus 로고
    • Genome Information Broker (GIB): Data retrieval and comparative analysis system for completed microbial genomes and more
    • Fumoto M, Miyazaki S, Sugawara H: Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more. Nucleic Acids Res 2002, 30:66-68.
    • (2002) Nucleic Acids Res , vol.30 , pp. 66-68
    • Fumoto, M.1    Miyazaki, S.2    Sugawara, H.3
  • 3
    • 84874658105 scopus 로고    scopus 로고
    • GIB
    • GIB [http://gib.genes.nig.ac.jp/]
  • 6
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes: The case of the gamma-Proteobacteria
    • Lerat E, Daubin V, Moran NA: From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria. PLoS Biol 2003, 1:101-109.
    • (2003) PLoS Biol , vol.1 , pp. 101-109
    • Lerat, E.1    Daubin, V.2    Moran, N.A.3
  • 7
    • 10744222156 scopus 로고    scopus 로고
    • Identification and characterization of multi-species conserved sequences
    • Margulies EH, Blanchette M, Haussler D, Green ED: Identification and characterization of multi-species conserved sequences. Genome Res 2003, 13:2507-2518.
    • (2003) Genome Res , vol.13 , pp. 2507-2518
    • Margulies, E.H.1    Blanchette, M.2    Haussler, D.3    Green, E.D.4
  • 8
    • 10944248427 scopus 로고    scopus 로고
    • Computing prokaryotic gene ubiquity: Rescuing the core from extinction
    • Charlebois RL, Doolittle WF: Computing prokaryotic gene ubiquity: rescuing the core from extinction. Genome Res 2004, 14:2469-2477.
    • (2004) Genome Res , vol.14 , pp. 2469-2477
    • Charlebois, R.L.1    Doolittle, W.F.2
  • 9
    • 0642333696 scopus 로고    scopus 로고
    • Characterization of species-specific genes using a flexible web-based querying system
    • Charlebois RL, Clarke GD, Beiko RG, St Jean A: Characterization of species-specific genes using a flexible web-based querying system. FEMS Microbiol Lett 2003, 225:213-220.
    • (2003) FEMS Microbiol Lett , vol.225 , pp. 213-220
    • Charlebois, R.L.1    Clarke, G.D.2    Beiko, R.G.3    St Jean, A.4
  • 10
    • 3042569657 scopus 로고    scopus 로고
    • Bacterial genomes as new gene homes: The genealogy of ORFans in E coli
    • Daubin V, Ochman H: Bacterial genomes as new gene homes: the genealogy of ORFans in E coli. Genome Res 2004, 14:1036-1042.
    • (2004) Genome Res , vol.14 , pp. 1036-1042
    • Daubin, V.1    Ochman, H.2
  • 17
    • 84874645963 scopus 로고    scopus 로고
    • Definition of items
    • Definition of items [http://www.insdc.org/feature_table.html]
  • 18
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 19
    • 84886755895 scopus 로고    scopus 로고
    • BLASTCLUST
    • BLASTCLUST [http://wwwncbinlmnihgov/BLAST/]
  • 20
    • 0035802405 scopus 로고    scopus 로고
    • Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): Characterization of horizontally transferred genes with emphasis on the E. coli O157 genome
    • Kanaya S, Kinouchi M, Abe T, Kudo Y, Yamada Y, Nishi T, Mori H, Ikemura T: Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome. Gene 2001, 276:89-99.
    • (2001) Gene , vol.276 , pp. 89-99
    • Kanaya, S.1    Kinouchi, M.2    Abe, T.3    Kudo, Y.4    Yamada, Y.5    Nishi, T.6    Mori, H.7    Ikemura, T.8
  • 23
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent WJ: BLAT-the BLAST-like alignment tool. Genome Res 2002, 14:656-664.
    • (2002) Genome Res , vol.14 , pp. 656-664
    • Kent, W.J.1
  • 24
    • 84886757842 scopus 로고    scopus 로고
    • DDBJ Blast
    • DDBJ Blast [http://www.ddbj.nig.ac.jp/search/blast-e.html]
  • 26
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cDNA sequence with a genomic DNA sequence
    • Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W: A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 1998, 8:967-974.
    • (1998) Genome Res , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3    Rubin, G.M.4    Miller, W.5
  • 27
    • 84874647430 scopus 로고    scopus 로고
    • Primer3
    • Primer3 [http://frodo.wi.mit.edu/primer3/primer3_code.html]
  • 28
    • 0041589545 scopus 로고    scopus 로고
    • Biological SOAP servers and web services provided by the public sequence data bank
    • Sugawara H, Miyazaki H: Biological SOAP servers and web services provided by the public sequence data bank. Nucleic Acids Res 2003, 31:3836-3839.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3836-3839
    • Sugawara, H.1    Miyazaki, H.2
  • 29
    • 84874663602 scopus 로고    scopus 로고
    • SOAP
    • SOAP [http://www.w3.org/2000/xp/Group/]
  • 30
    • 84874649937 scopus 로고    scopus 로고
    • XML Central of DDBJ
    • XML Central of DDBJ [http://www.xml.nig.ac.jp/index.html]
  • 31
    • 84874647069 scopus 로고    scopus 로고
    • GenBank
    • ftp://ftp.ncbi.nih.gov/genomes/
    • GenBank [ftp://ftp.ncbi.nih.gov/genomes/]
  • 33
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitoh N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitoh, N.1    Nei, M.2
  • 34
    • 84874651910 scopus 로고    scopus 로고
    • G-InforBIO
    • download site
    • G-InforBIO download site [http://www.wdcm.org/inforbio/G-InforBIO/ download.html]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.