Erratum: Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation (The EMBO Journal (2006) 25 (3702-3713) DOI:10.1038/sj.emboj.7601237);Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation

EMBO Journal

Volumn 25, Issue 15, 2006, Pages 3702-3713

  Yildiz, Özkan ^a   Vinothkumar, Kutti R ^a,b   Goswami, Panchali ^a   Kühlbrandt, Werner ^a  

^a MAX PLANCK INSTITUTE OF BIOPHYSICS   (Germany)

^b MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

Author keywords

2D crystallization; Membrane protein; Protein function; X ray crystallography

Indexed keywords

DETERGENT; HISTIDINE; OUTER MEMBRANE PROTEIN; PORIN; PROTEIN OMPG; UNCLASSIFIED DRUG;

ARTICLE; BETA CHAIN; CELL INCLUSION; CRYSTALLIZATION; ESCHERICHIA COLI; HYDROGEN BOND; HYDROPHOBICITY; LIPID BILAYER; NONHUMAN; PH; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE;

ESCHERICHIA COLI;

EID: 33747623998     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/sj.emboj.7601371     Document Type: Erratum

References (44)

1. Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA (2001) Electrostatics of nanosystems: application to microtubules and the ribosome. Proc Natl Acad Sci USA 98: 10037-10041
2. Behlau M, Mills DJ, Quader H, Kühlbrandt W, Vonck J (2001) Projection structure of the monomeric porin OmpG at 6 A resolution. J Mol Biol 305: 71-77
3. Benz R, Janko K, Boos W, Lauger P (1978) Formation of large, ion-permeable membrane channels by the matrix protein (porin) of Escherichia coli. Biochim Biophys Acta 511: 305-319
4. Collaborative Computational Project, N. (1994) The Ccp4 suite - programs for protein crystallography. Acta Crystallogr D 50: 760-763
5. Conlan S, Bayley H (2003) Folding of a monomeric porin, OmpG, in detergent solution. Biochemistry 42: 9453-9465
6. Conlan S, Zhang Y, Cheley S, Bayley H (2000) Biochemical and biophysical characterization of OmpG: a monomeric porin. Biochemistry 39: 11845-11854
7. Cowan SW, Garavito RM, Jansonius JN, Jenkins JA, Karlsson R, Konig N, Pai EF, Pauptit RA, Rizkallah PJ, Rosenbusch JP, Rummel G, Schirmer T (1995) The structure of Ompf porin in a tetragonal crystal form. Structure 3: 1041-1050
8. Cowan SW, Schirmer T, Rummel G, Steiert M, Ghosh R, Pauptit RA, Jansonius JN, Rosenbusch JP (1992) Crystal-structures explain functional-properties of 2 Escherichia-coli porins. Nature 358: 727-733
9. Crowther RA, Henderson R, Smith JM (1996) MRC image processing programs. J Struct Biol 116: 9-16
10. Deisenhofer J, Michel H (1989) Nobel lecture. The photosynthetic reaction centre from the purple bacterium Rhodopseudomonas viridis. EMBO J 8: 2149-2170
11. Delano WL (2004) Use of PYMOL as a communications tool for molecular science. Abstr Papers Am Chem Soc 228: U313-U314
12. Dutzler R, Rummel G, Alberti S, Hernandez-Alles S, Phale P, Rosenbusch J, Benedi V, Schirmer T (1999) Crystal structure and functional characterization of OmpK36, the osmoporin of Klebsiella pneumoniae. Structure 7: 425-434
13. Dutzler R, Wang YF, Rizkallah P, Rosenbusch JP, Schirmer T (1996) Crystal structures of various maltooligosaccharides bound to maltoporin reveal a specific sugar translocation pathway. Structure 4: 127-134
14. Emsley P, Cowtan K (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D 60: 2126-2132
15. Fajardo DA, Cheung J, Ito C, Sugawara E, Nikaido H, Misra R (1998) Biochemistry and regulation of a novel Escherichia coli K-12 porin protein, OmpG, which produces unusually large channels. J Bacteriol 180: 4452-4459
16. Fenn TD, Ringe D, Petsko GA (2003) POVScript+: a program for model and data visualization using persistence of vision ray-tracing. J Appl Crystallogr 36: 944-947
17. Ferguson AD, Hofmann E, Coulton JW, Diederichs K, Welte W (1998) Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide. Science 282: 2215-2220
18. Forst D, Schulein K, Wacker T, Diederichs K, Kreutz W, Benz R, Welte W (1993) Crystallization and preliminary X-ray diffraction analysis of ScrY, a specific bacterial outer membrane porin. J Mol Biol 229: 258-262
19. Forst D, Welte W, Wacker T, Diederichs K (1998) Structure of the sucrose-specific porin ScrY from Salmonella typhimurium and its complex with sucrose. Nat Struct Biol 5: 37-46
20. Garavito RM, Rosenbusch JP (1980) Three-dimensional crystals of an integral membrane protein: an initial X-ray analysis. J Cell Biol 86: 327-329
21. Hiller M, Krabben L, Vinothkumar KR, Castellani F, van Rossum BJ, Kühlbrandt W, Oschkinat H (2005) Solid-state magic-angle spinning NMR of outer-membrane protein G from Escherichia coli. Chembiochem 6: 1679-1684
22. Jap BK (1989) Molecular design of phoe porin and its functional consequences. J Mol Biol 205: 407-419
23. Kabsch W (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Crystallogr 26: 795-800
24. Krissinel E, Henrick K (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D 60: 2256-2268
25. Kühlbrandt W (1992) 2-Dimensional crystallization of membrane-proteins. Quart Rev Biophys 25: 1-49
26. Kurisu G, Zakharov SD, Zhalnina MV, Bano S, Eroukova VY, Rokitskaya TI, Antonenko YN, Wiener MC, Cramer WA (2003) The structure of BtuB with bound colicin E3 R-domain implies a translocon. Nat Struct Biol 10: 948-954
27. McCoy AJ, Grosse-Kunstleve RW, Storoni LC, Read RJ (2005) Likelihood-enhanced fast translation functions. Acta Crystallogr D 61: 458-464
28. Meyer JE, Hofnung M, Schulz GE (1997) Structure of maltoporin from Salmonella typhimurium ligated with a nitrophenyl-maltotrioside. J Mol Biol 266: 761-775
29. Misra R, Benson SA (1989) A novel mutation, cog, which results in production of a new porin protein (OmpG) of Escherichia coli K-12. J Bacteriol 171: 4105-4111
30. Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D 53: 240-255
31. Nikaido H (2003) Molecular basis of bacterial outer membrane permeability revisited. Microbiol Mol Biol Rev 67: 593-656
32. Pfanner N, Wiedemann N (2002) Mitochondrial protein import: two membranes, three translocases. Curr Opin Cell Biol 14: 400-411
33. Saint N, Prilipov A, Hardmeyer A, Lou KL, Schirmer T, Rosenbusch JP (1996) Replacement of the sole histidinyl residue in OmpF porin from E. coli by threonine (H21T) does not affect channel structure and function. Biochem Biophys Res Commun 223: 118-122
34. Sass HJ, Buldt G, Beckmann E, Zemlin F, Vanheel M, Zeitler E, Rosenbusch JP, Dorset DL, Massalski A (1989) Densely packed beta-structure at the protein lipid interface of porin is revealed by high-resolution cryo-electron microscopy. J Mol Biol 209: 171-175
35. Schirmer T, Keller TA, Wang YF, Rosenbusch JP (1995) Structural basis for sugar translocation through maltoporin channels at 3.1-angstrom resolution. Science 267: 512-514
36. Schleiff E, Soll J, Kuchler M, Kühlbrandt W, Harrer R (2003) Characterization of the translocon of the outer envelope of chloroplasts. J Cell Biol 160: 541-551
37. Schmid K, Ebner R, Jahreis K, Lengeler JW, Titgemeyer F (1991) A sugar-specific porin, ScrY, is involved in sucrose uptake in enteric bacteria. Mol Microbiol 5: 941-950
38. Song L, Gouaux E (1998) Crystallization of the alpha-hemolysin heptamer solubilized in decyldimethyl- and decyldiethylphosphine oxide. Acta Crystallogr D 54 (Part 2): 276-278
39. Struyve M, Moons M, Tommassen J (1991) Carboxy-terminal phenylalanine is essential for the correct assembly of a bacterial outer-membrane protein. J Mol Biol 218: 141-148
40. Szmelcman S, Schwartz M, Silhavy TJ, Boos W (1976) Maltose transport in Escherichia coli K12. A comparison of transport kinetics in wild-type and lambda-resistant mutants as measured by fluorescence quenching. Eur J Biochem 65: 13-19
41. Terwilliger T (2004) SOLVE and RESOLVE: automated structure solution, density modification, and model building. J Synchrotron Radiat 11: 49-52
42. van den Berg B, Black PN, Clemons WM, Rapoport TA (2004) Crystal structure of the long-chain fatty acid transporter FadL. Science 304: 1506-1509
43. Weiss MS, Abele U, Weckesser J, Welte W, Schiltz E, Schulz GE (1991) Molecular architecture and electrostatic properties of a bacterial porin. Science 254: 1627-1630
44. Ye J, Van den Berg B (2004) Crystal structure of the bacterial nucleoside transporter Tsx. EMBO J 23: 3187-3195