Monophyletic origin of freshwater sponges in ancient lakes based on partial structures of COXI gene

Hydrobiologia

Volumn 568, Issue SUPPL. 1, 2006, Pages 155-159

  Itskovich, V B ^a   Belikov, S I ^a   Efremova, S M ^b   Masuda, Y ^c   Krasko, A ^d   Schroeder, H C ^d   Mueller, W E G ^d  

^a LIMNOLOGICAL INSTITUTE   (Russian Federation)

^b ST PETERSBURG STATE UNIVERSITY   (Russian Federation)

^c KAWASAKI MEDICAL SCHOOL   (Japan)

^d JOHANNES GUTENBERG UNIVERSITY   (Germany)

Author keywords

COXI; Lubomirskiidae; Molecular phylogeny; Porifera; Potamolepidae; Spongillidae

Indexed keywords

BIOLOGICAL MATERIALS; CYTOLOGY; GENETIC ENGINEERING; LAKES;

COXI; LUBOMIRSKIIDAE; MOLECULAR PHYLOGENY; PORIFERA; POTAMOLEPIDAE; SPONGILLIDAE;

BIODIVERSITY;

CYTOCHROME; GENE EXPRESSION; PHYLOGENETICS; SPONGE;

LUBOMIRSKIIDAE; POTAMOLEPIDAE; SPONGILLIDAE;

EID: 33747587630     PISSN: 00188158     EISSN: 15735117     Source Type: Journal    
DOI: 10.1007/s10750-006-0320-z     Document Type: Conference Paper

References (21)

1. Altschul, S. F., T. L. Madden, A. A. SchKfer, J. Zhang, Z. Zhang, W. Miller & D. J. Lipman 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389-3402.
2. Beagley, C. T., N. A. Okada & D. R. Wolstenholme, 1996. Two mitochondrial group I introns in a metazoan, the sea anemone Metridium senile: one intron contains genes for subunits 1 and 3 of NADH dehydrogenase. Proceedings of the National Academy of Sciences of USA 93: 5619-5623.
3. Bridge, D., C. W. Cunningham, B. Schierwater, R. DeSalle & L. W. Buss, 1992. Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structure. Proceedings of the National Academy of Sciences of USA 89: 8750-8753.
4. Brien, P., 1970. Les Potamolepides africaines nouvelles du Luapula et du Lac Moero. Symposium Zoological Society, London 25: 163-186.
5. Efremova, S. M., 1981. Structure and embryonic development of Baikal sponge Lubomirskia baikalensis (Pall.) and relations of Lubomirskiidae to other sponges. In Korotkova, G.P. (ed.), Sponge Morphogenesis. Biological Institute Leningrad University Proceedings, University Press, Leningrad, 33: 93-107.
6. Efremova, S. M., 1994. The evolutionary pathways of baikalian sponges. In Baikal as a Natural Laboratory for Global Change' INTAS-RAS SB Workshop. (Irkutsk, Russia, May 11-17, 1994), Abstracts 5:21. Irkutsk, Lisna Publ.
7. Ehara, M., Y. Inagaki, K. I. Watanabe & T. Ohama, 2000. Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution. Current Genetics 37: 29-33.
8. Felsenstein, J., 1995. PHYLIP (Phylogeny Inference Package). Version 3.5c. Executables for 386/486/Pentium Windows systems (University of Washington: Washington).
9. Folmer, O., M. Black, W. Hoeh, R. Lutz & R. Vrijenhoek, 1994. DNA primer for amplification of mitohondrial cytochrome c. Molecular Marine Biotechnology 3: 294-299.
10. Gureeva, M. A., 1982. A question of baikalian sponges origin. In: New about Baikal fauna. Novosibirsk: Nauka. Siberian Otd-nie, 32-38, (in Russian).
11. Gustincich, S., G. Manfioletti, G. Del Sal, C. Schneider & P. Carnincy, 1991. A fast method for high-quality genomic DNA extraction from whole human blood. Biotechniques 11: 298-300.
12. Inagaki, Y., Y. Hayashi-Ishimaru, M. Ehara, I. Igarashi & T. Ohama, 1997. Algae or protozoa: phylogenetic position of euglenophytes and dinoflagellates as inferred from mitochondrial sequences. Journal of Molecular Evolution 45: 295-300.
13. Itskovich, V. B., S. I. Belikov, S. M. Efremova & Y. Masuda, 1999. Phylogenetic relationships between Lubomirskiidae, Spongillidae and some marine sponges according partial sequences of 18S rDNA. Memoirs of the Queensland Museum 44: 275-280.
14. Kimura, M., 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111-120.
15. Marshall, W., 1885. On some new siliceous sponges collected by M. Pechuel-Losche in the Kongo. Annales Magazines Natural History 12: 391-412.
16. Mueller, W. E. G., M. Kruse, C. Koziol & S. P. Leys, 1998. Evolution of early Metazoa: phylogenetic status of the Hexactinellidae within the phylum Porifera (sponges). Progress in Molecular and Subcellular Biology 21: 141-156.
17. Pont-Kingdon G., C. G. Vassort, R. Warrior, R. Okimoto, C. T. Beagley, A. G. Rodrigo, P. R. Bergquist, P. L. Bergquist & R. A. Reeves, 1994. Are sponges animals? An investigation into the vagaries of phylogenetic interference. In: Sponges in Time and Space, v. Soest, R. W. M., T. M. G. v. Kempen & J. C. Braekman (eds), Balkema Press, Rotterdam, 47-54.
18. Thompson, J. D., D. G. Higgins & T. J. Gibson, 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 11: 4673-80.
19. Volkmeir-Ribeiro, C., 1990. A new insight into the systematics, evolution and taxonomy of freshwater sponges. In Rutzler, K. (ed.), New perspectives in sponge biology. Smithsonian Institution Press, Washington, D.C, 323-331.
20. Watkins, R. F. & A. T. Beckenbach, 1999. Partial sequence of a sponge mitochondrial genome reveals sequence similarity to Cnidaria in cytochrome oxidase subunit II and the large ribosomal RNA subunit. Journal of Molecular Evolution 48: 542-554.
21. Wolstenholme, 2000. Mitochondrial DNA of hydra attenuata (Cnidaria): A sequence that includes an end of one linear molecule and the genes for l-rRNA, tRNA(f-Met), tRNA(Trp), COII, and ATPase8. Journal of Molecular Evolution 51: 404-415.