Toward a blueprint for β-primeverosidase from tea leaves structure/function properties: Homology modeling study

Journal of Theoretical and Computational Chemistry

Volumn 5, Issue SPEC. ISS. 1, 2006, Pages 433-446

  Han, Wei Wei ^a   Li, Ze Sheng ^a   Zheng, Qing Chuan ^a   Sun, Chia Chung ^a  

^a JILIN UNIVERSITY   (China)

Author keywords

Docking; Molecular dynamics; Primeverosidase

Indexed keywords

EID: 33747456356     PISSN: 02196336     EISSN: None     Source Type: Journal    
DOI: 10.1142/s0219633606002374     Document Type: Article

References (26)

1. Ahn YO, Mizutani M, Saino H, Sakata K, J Biol Chem 279:23405, 2004.
2. Matsumura, S, Takahashi S, Nishikitani M, Kubota, K, Kobayashi A, J Agric Food Chem 45:2674, 1998.
3. Ijima Y, Ogawa K, Usui T, Ohnishi-Kameyama M, Nagazo T, Sakata K, J Agric Food Chem 46:1712, 1998.
4. Wang DM, Kurasawa E, Yamaguchi Y, Kubota K, Kobayashi A, J Agric Food Chem 49:1900, 2001.
5. Mizutani M, Nakanishi H, Ema J-I, Ma S-J, Noguchi E, Inohara-Ochiai M, Fukuchi-Mizutani M, Nakao M, Sakata K, Plant Physiol 130:2164, 2002.
6. Barrett T, Suresh CG, Tolley SP, Dodson EJ, Hughes IA, Structure 3:915, 1995.
7. Insight II, Version, San Diego, 2000.
8. Altschul SF, Madden TL, Schfer AA, Zhang JZ, Miller W, Lipman DJ, Nucl Acid Res 25:3389, 1997.
9. Guex N, Peitsch MC, Electrophoresis 18:1884, 1997.
10. Discover 3 User Guide, Accelrys Inc. San Diego, USA, 1999.
11. Profile-3D User Guide, Accelrys Inc. San Diego, USA, 1999.
12. Binding Site Analysis User Guide, Accelrys Inc. San Diego, USA, 1999.
13. Affinity User Guider, Accelrys Inc. San Diego, USA, 1999.
14. Verdoucq L, Moriniere J, Bevan DR, Esen A, Vasella A, Henrissat B, Czjzek M, J Biol Chem 279:31796, 2004.
15. Zouhar J, Vevodova J, Marek J, Damborsky J, Su X-D, Brzobohaty B, Plant Physiol 127:973, 2001.
16. Homology User Guide, Accelrys Inc. San Diego, USA, 1999.
17. Laskowski RA, MacArthur MW, Moss DS, Thornton JM, J Appl Cryst 26:283, 1993.
18. Hrmova M, MacGregor EA, Biely P, Stewart RJ, Fincher GB, J Biol Chem 18:11134, 1998.
19. Hrmova M, Gori RD, Smith BJ, Fairweather JK, Driguez H, Varghese JN, Fincher GB, Plant Cell 14:1033, 2002.
20. Mirza O, Skov LK, Remaud-Simeon M, de Montalk GP, Albenne C, Biochemistry 40:9032, 2001.
21. Czjzek M, Cicek M, Zambon V, Burmeister WP, Bevans DR, Henrissat B, Esen A, Biochem J 354:37, 2001.
22. Zhou J, Hartmann S, Shepherd BK, Pouylton JE, Plant Physiol 129:1252, 2002.
23. Sanz-Aparicio J, Hermoso JA, Martinez-Rippoll M, Lequerica JL, Polaina J, J Mol Biol 275:491, 1998.
24. Cicek M, Blanchard D, Bevan DR, Esen A, J Biol Chem 275:20002, 2000.
25. Verdoucq L, Czjek M, Moriniere J, Bevan DR, Esen A, J Biol Chem 278:25055, 2003.
26. Vallmitjana M, Ferrer-Navarro M, Planell R, Abel M, Ausin C, Querol E, Planas A, Perez-Pons J-A, Biochemistry 40:5975, 2001.