Comparison of vacuum matrix-assisted laser desorption/ionization (MALDI) and atmospheric pressure MALDI (AP-MALDI) tandem mass spectrometry of 2-dimensional separated and trypsin-digested glomerular proteins for database search derived identification

Journal of Proteome Research

Volumn 5, Issue 8, 2006, Pages 1967-1978

  Mayrhofer, Corina ^a,b   Krieger, Sigurd ^b   Raptakis, Emmanuel ^c   Allmaier, Günter ^a  

^a VIENNA UNIVERSITY OF TECHNOLOGY   (Austria)

^b MEDICAL UNIVERSITY OF VIENNA   (Austria)

^c Kratos Analytical Ltd   (United Kingdom)

Author keywords

Atmospheric pressure matrix assisted laser desorption ionization; Kidney proteomics; Low and high energy collision induced dissociation; Post source decay; Two dimensional gel electrophoresis; Vacuum matrix assisted laser desorption ionization

Indexed keywords

GLOMERULAR PROTEIN; TRYPSIN; UNCLASSIFIED DRUG;

ALGORITHM; AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; ATMOSPHERIC PRESSURE; ATMOSPHERIC PRESSURE MATRIX ASSISTED LASER DESORPTION TANDEM MASS SPECTROMETRY; DATA ANALYSIS; DISSOCIATION; ENERGY; EVALUATION; GLOMERULUS; HYDROPHILICITY; HYDROPHOBICITY; MOTION; NONHUMAN; PARAMETER; PRIORITY JOURNAL; PROTEIN BLOOD LEVEL; PROTEIN DATABASE; PROTEIN DEGRADATION; RAT; SEQUENCE ANALYSIS; SEQUENCE TAGGED SITE; TANDEM MASS SPECTROMETRY; VACUUM; VACUUM MATRIX ASSISTED LASER DESORPTION IONIZATION TANDEM MASS SPECTROMETRY;

ALGORITHMS; AMINO ACID SEQUENCE; ANIMALS; DATABASES, PROTEIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; IONS; KIDNEY GLOMERULUS; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PROTEINS; PROTEOME; RATS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TRYPSIN;

EID: 33747221747     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr060165s     Document Type: Article

References (44)

1. Tanaka, K. I.; Y.; Akita, S.; Yoshida, Y.; Yoshida, T. In Proceedings of the 2nd Japan-China Joint Symposium on Mass Spectrometry, Osaka, Japan, 1987; 185-187.
2. Karas, M.; Hillenkamp, F. Anal. Chem. 1988, 60 (20), 2299-2301.
3. Brown, R. S.; Lennon, J. J. Anal. Chem. 1995, 67(13), 1998-2003.
4. Colby, S. M. K. T. B.; Reilly, J. P. Rapid Commun. Mass Spectrom. 1994, 8 865-868.
5. Vestal, M. I.; P.; Martin, S. A. Rapid Commun. Mass Spectrom. 1995, 9 1044-1050.
6. Whittal, R. M.; Li, L. Anal. Chem. 1995, 67 (13), 1950-1954.
7. Jensen, O. N.; Podtelejnikov, A.; Mann, M. Rapid Commun. Mass Spectrom. 1996, 10 (11), 1371-1378.
8. Mamyrin, B. A.; Karatajev, V. J.; Shmikk, D. V.; Zagulin, V. A. Sov. Phys. JETP 1973, 37, 45-48.
9. Medzihradszky, K. F.; Campbell, J. M.; Baldwin, M. A.; Falick, A. M.; Juhasz, P.; Vestal, M. L.; Burlingame, A. L. Anal. Chem. 2000, 72 (3), 552-558.
10. Doroshenko, V. M.; Cotter, R. J. J. Mass Spectrom. 1998, 33 (4), 305-318.
11. Shevchenko, A.; Loboda, A.; Shevchenko, A.; Ens, W.; Standing, K. G. Anal. Chem. 2000, 72 (9), 2132-2141.
12. Lee, H.; Lubman, D. M. Anal. Chem. 1995, 67 (8), 1400-1408.
13. Castoro, J. A.; Koster, C.; Wilkins, C. L. Anal. Chem. 1993, 65 (6), 784-788.
14. Annan, R. S.; Kochling, H. J.; Hill, J. A.; Biemann, K. Rapid Commun. Mass Spectrom. 1992, 6 (4), 298-302.
15. Doroshenko, V. M.; Cotter, R. J. Anal. Chem. 1995, 67 (13), 2180-2187.
16. Qin, J.; Chait, B. T. Anal. Chem. 1996, 68 (13), 2108-2112.
17. Qin, J.; Chait, B. T. Anal. Chem. 1996, 68 (13), 2102-2107.
18. Qin, J.; Ruud, J.; Chait, B. T. Anal. Chem. 1996, 68 (10), 1784-1791.
19. Laiko, V. V.; Baldwin, M. A.; Burlingame, A. L. Anal. Chem. 2000, 72, (4), 652-657.
20. Laiko, V. V.; Moyer, S. C.; Cotter, R. J. Anal. Chem. 2000, 72 (21), 5239-5243.
21. Henzel, W. J.; Billeci, T. M.; Stults, J. T.; Wong, S. C.; Grimley, C.; Watanabe, C. Proc. Nat'1. Acad. Sci., U.S.A. 1993, 90 (11), 5011-5015.
22. James, P.; Quadroni, M.; Carafoli, E.; Gonnet, G. Biochem. Biophys. Res. Commun. 1993, 195 (1), 58-64.
23. Mann, M.; Hojrup, P.; Roepstorff, P. Biol. Mass Spectrom. 1993, 22 (6), 338-345.
24. Pappin, D. J.; Hojrup, P.; Bleasby, A. J. Curr. Biol. 1993, 3 (6), 327-332.
25. Yates, J. R., 3rd; Speicher, S.; Griffin, P. R.; Hunkapiller, T. Anal. Biochem. 1993, 214 (2), 397-408.
26. Spengler, B.; Kirsch, D.; Kaufmann, R.; Jaeger, E. Rapid Commun. Mass Spectrom. 1992, 6 (2), 105-108.
27. Kaufmann, R.; Chaurand, P.; Kirsch, D.; Spengler, B. Rapid Commun. Mass Spectrom. 1996, 10 (10), 1199-1208.
28. Johnson, R. M.; S. A.; Biemann, K.; Stults, J. T.; Watson, J. T. Anal. Chem. 1987, 59 (21), 2621-2625.
29. Johnson, R. M.; S. A.; Biemann, K. Int. J. Mass Spectrom. Ion Processes 1988, 86, 137-154.
30. Cramer, R.; Corless, S. Rapid Commun. Mass Spectrom. 2001, 15 (22), 2058-2066.
31. Kaufmann, R.; Spengler, B.; Lutzenkirchen, F. Rapid Commun. Mass Spectrom. 1993, 7 (10), 902-910.
32. Macht, M.; Asperger, A.; Deininger, S. O. Rapid Commun. Mass Spectrom. 2004, 18 (18), 2093-2105.
33. Rouse, J. Y.; W.; Martins, S. A. J. Am. Soc. Mass Spectrom. 1995, 6 (9), 822-835.
34. Kaufmann, R.; Kirsh, D.; Spengler, B. Int. J. Mass Spectrom. Ion Proc. 1994, 131, 355.
35. Doroshenko, V. M.; Laiko, V. V.; Taranenko, N. I.; Berkout V. D.; Lee H. S. Int. J. Mass Spectrom. 2002, 221, 39-58.
36. Levander, F.; James, P. J. Proteome Res. 2005, 4 (1), 71-74.
37. Mehl, J. T.; Cummings, J. J.; Rohde, E.; Yates, N. N. Rapid Commun. Mass Spectrom. 2003, 17 (14), 1600-1610.
38. Wang-Su, S. T.; McCormack, A. L.; Yang, S.; Hosler, M. R.; Mixon, A.; Riviere, M. A.; Wilmarth, P. A.; Andley, U. P.; Garland, D.; Li, H.; David, L. L.; Wagner, B. I. Invest. Ophthalmol. Vis. Sci. 2003, 44 (11), 4829-4836.
39. Keough, T.; Lacey, M. P.; Strife, R. J. Rapid Commun. Mass Spectrom. 2001, 15 (23), 2227-2239.
40. Breiteneder-Geleff, S.; Matsui, K.; Soleiman, A.; Meraner, P.; Poczewski, H.; Kalt, R.; Schaffner, G.; Kerjaschki, D. Am. J. Pathol. 1997, 151 (4), 1141-1152.
41. Blum, H.; Beier, H.; Gross, H. J. Electrophoresis 1987, 8, 93-99.
42. Gharahdaghi, F.; Weinberg, C. R.; Meagher, D. A.; Imai, B. S.; Mische, S. M. Electrophoresis 1999, 20 (3), 601-605.
43. Vorm, O.; Roepstorff, P.; Mann, M. Anal. Chem. 1994, 66, 3281-3287.
44. Mayrhofer, C.; Krieger, S.; Allmaier, G.; Kerjaschki, D. Proteomics 2006, 6 (2), 579-585.