Randomly amplified DNA fingerprinting: A culmination of DNA marker technologies based on arbitrarily-primed PCR amplification

Journal of Biomedicine and Biotechnology

Volumn 2002, Issue 3, 2002, Pages 141-150

  Waldron, Julie ^a   Peace, Cameron P ^a,b   Searle, Iain R ^a   Furtado, Agnelo ^a,c   Wade, Nick ^a   Findlay, Ian ^d   Graham, Michael W ^a   Carroll, Bernard J ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b CSIRO   (Australia)

^c BSES LIMITED   (Australia)

^d Australian Genome Research Facility Ltd   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALI; DNA MARKER; FLUORESCENT DYE; MICROSATELLITE DNA; PHOSPHORUS 33; POLYACRYLAMIDE GEL; PRIMER DNA;

AMPLICON; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CLINICAL EFFECTIVENESS; CODOMINANCE; COST EFFECTIVENESS ANALYSIS; DNA FINGERPRINTING; DNA PURIFICATION; DOMINANT INHERITANCE; GENE AMPLIFICATION; GENE LOCUS; GENOME; INTERMETHOD COMPARISON; ISOTOPE LABELING; LEAF TISSUE; NONHUMAN; POLYMERASE CHAIN REACTION; RELIABILITY; REPRODUCIBILITY; SENSITIVITY ANALYSIS; SUGARCANE; WHEAT;

TRITICUM AESTIVUM;

EID: 33746976684     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/S1110724302206026     Document Type: Article

References (27)

1. Tanksley SD, Ganal MW, Martin GB. Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes. Trends Genet. 1995;11(2):63-68.
2. Akkaya MS, Shoemaker RC, Specht JE, Bhagwat AA, Cregan PB. Integration of simple sequence repeat DNA markers into a soybean linkage map. Crop Sci. 1995;35:1439-1445.
3. Williams JG, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 1990;18(22):6531-6535.
4. Welsh J, McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 1990;18(24):7213-7218.
5. Caetano-Anolles G, Bassam BJ, Gresshoff PM. DNA amplification fingerprinting using very short arbitrary oligonucleotide primers. Biotechnology (N Y). 1991;9(6):553-557.
6. Bassam BJ, Caetano-Anolles G, Gresshoff PM. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem. 1991;196(1):80-83.
7. Bentley S, Bassam BJ. A robust DNA amplification fingerprinting system applied to analysis of genetic variation within Fusarium oxysporum fsp cubense. J Phytopath. 1996;144:207-213.
8. Jiang Q, Gresshoff PM. Classical and molecular genetics of the model legume Lotus japonicus. Mol Plant Microbe Interact. 1997;10(1):59-68.
9. Vos P, Hogers R, Bleeker M, et al. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 1995;23(21):4407-4414.
10. Pooler MR, Scorza R. Aberrant transmission of RAPD markers in haploids, doubled haploids, and F1 hybrids of peach: Observations and speculation on causes. Scientia Horticult. 1995;64:233-241.
11. Weeden NF, Timmerman GM, Hemmat M, Kneen BE, Lodhi MA. Inheritance and reliability of RAPD markers. In: Hoisington D, McNab A, eds. A proceedings of the symposium on application of RAPD technology to plant breeding. Madison, WI: Crop Science Society of America; 1992:12-17.
12. Thomas CM, Vos P, Zabeau M, et al. Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium fulvum. Plant J. 1995;8(5):785-794.
13. Huang J, Sun M. A modified AFLP with fluorescence-labelled primers and automated DNA sequencer detection for efficient fingerprinting analysis in plants. Biotech Techniques. 1999;13:277-278.
14. Carroll BJ, Klimyuk VI, Thomas CM, et al. Germinal transpositions of the maize element Dissociation from T-DNA loci in tomato. Genetics. 1995;139(1):407-420.
15. Carroll BJ, McNeil DL, Gresshoff PM. Mutagenesis of soybean (Glycine max (L.) Merr) and the isolation of nonnodulating mutants. Plant Sci. 1986;47:109-114.
16. [ 16] Song L, Carroll BJ, Gresshoff PM, Herridge DF. Field assessment of supernodulating genotypes of soybean for yield, N-2 fixation and benefit to subsequent crops. Soil Biol Biochem. 1995;27:563-569.
17. Peace CP. Genetic characterization of macadamia with DNA markers [PhD thesis]. Brisbane, Australia: The University of Queensland; 2002.
18. Klimyuk VI, Carroll BJ, Thomas CM, Jones JD. Alkali treatment for rapid preparation of plant material for reliable PCR analysis. Plant J. 1993;3(3):493-494.
19. Arumuganathan K, Earle ED. Nuclear DNA content of some important plant species. Molec Gen Genet. 1991;9:208-218.
20. Sambrook J, Fritsch EF, Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press; 1989.
21. Michelmore RW, Paran I, Kesseli RV. Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA. 1991;88(21):9828-9832.
22. Reamon-Buttner SM, Schmidt T, Jung C. AFLPs represent highly repetitive sequences in Asparagus officinalis L. Chromosome Res. 1999;7(4):297-304.
23. Alonso-Blanco C, Peeters AJ, Koornneef M, et al. Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. Plant J. 1998;14(2):259-271.
24. Bert PF, Charmet G, Sourdille P, Hayward MD, Balfourier F. A high-density molecular map for ryegrass (Lolium perenne) using AFLP markers. Theor Appl Genet. 1999;99:445-452.
25. Castiglioni P, Ajmone-Marsan P, van Wijk R, Motto M. AFLP markers in a molecular linkage map of maize: Codominant scoring and linkage group distribution. Theor Appl Genet. 1999;99:425-131.
26. Young WP, Schupp JM, Keim P. DNA methylation and AFLP marker distribution in the soybean genome. Theor Appl Genet. 1999;99:785-792.
27. Searle IR. Towards the map-based cloning of the supernodulation (nts-1) locus of soybean [PhD thesis]. Brisbane, Australia: The University of Queensland; 2002.