Automating Microsatellite Genotyping with Array Tape

JALA - Journal of the Association for Laboratory Automation

Volumn 11, Issue 4, 2006, Pages 260-267

  Chudyk, Jon P ^a   Rusch, Terry L ^a   Fieweger, Kim M ^a   Dobrin, Seth E ^a   Weber, James L ^a  

^a MARSHFIELD CLINIC   (United States)

Author keywords

array type; autoloading; CO2 laser; genotyping; microsatellite

Indexed keywords

AMPLIFICATION; ARRAYS; CARBON DIOXIDE LASERS; CONTROL SYSTEMS; DNA; ELECTROPHORESIS; POLYPROPYLENES;

MICROSATELLITE GENOTYPING; MICROTITER PLATES; POLYMERASE CHAIN REACTION; SYRINGE ARRAY;

GENES;

CARBON DIOXIDE; DNA FRAGMENT; MICROSATELLITE DNA; POLYPROPYLENE;

ARTICLE; AUTOANALYSIS; CALIBRATION; CARBON DIOXIDE LASER; CHROMOSOME; COMPUTER PROGRAM; CONFORMATION; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; DNA MICROARRAY; ELECTROPHORESIS; EXTRACTION; GENE AMPLIFICATION; GENETIC POLYMORPHISM; GENOTYPE; LABORATORY TEST; MICROSATELLITE MARKER; MICROTITER PLATE ASSAY; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SAMPLE SIZE; SHORT TANDEM REPEAT; STANDARDIZATION; SYRINGE; TANDEM REPEAT;

EID: 33746899752     PISSN: 15355535     EISSN: 15402452     Source Type: Journal    
DOI: 10.1016/j.jala.2006.05.007     Document Type: Article

References (14)

1. Astle T.W. A 384-well alternative for compound libraries. JALA 4 (1999) 10-11
2. Society for Biomolecular Screening. ANSI approves microplate standards drafted by SB S MSDC committee. J. Biomol. Screen 9 (2004) 1
3. Yu A., Rusch T., Dickinson W., Fieweger K., Chudyk J., David D., and Weber J. Microtape: an alternative to microtiter plates for high throughput genotyping and other applications. Am. J. Hum. Genet 73 (2003) 483
4. Rusch, T. L.; Dickinson, W.; et al (2003). Updated instrumentation for continuous array genotyping of short insertion/deletion polymorphisms. Engineering in Medicine and Biology Society, 2003. Proceedings of the 25th Annual International Conference of the IEEE 4: pp. 3582-3585.
5. Hicks J.S., Harker B.W., Beattie K.L., and Doktycz M.J. Modification of an automated liquid-handling system for reagent-jet, nanoliter-level dispensing. Biotechniques 30 4 (2001) 878-885
6. Hawkins J.R., Khripin Y., Valdes A.M., and Weaver T.A. Miniaturized sealed-tube allele-specific PCR. Hum. Mutat 19 (2002) 543-553
7. Gutentag, C. E.; Sierra, R. A. Selecting Methods for Packing, Shipping, and Handling of Low Cost Good Die. Electronic Components and Technology Conference. Las Vegas, 2000, p. 7.
8. Mahoney W.A. Mechanically Interlocking Tape and Reel Technology for Automatic Packaging and Feeding of Components (1997), Nepcon West, Anaheim, CA
9. Gruenwald G. Thermoforming: A Plastic Processing Guide (1987), Technomic Publishing Co., Inc
10. Throne J.L. Understanding Thermoforming (1999), Hanser Gardner Publications, Inc., Cincinnati, OH
11. Holland P.M., Abramson R.D., Watson R., and Gelfand D.H. Detection of specific polymerase chain reaction product by utilizing the 5′→3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proc. Natl. Acad. Sci. USA 88 16 (1991) 7276-7280
12. Middendorf L.R., Bruce J.C., Bruce R.C., Eckles R.D., Grone D.L., Roemer S.C., Sloniker G.D., Steffens D.L., Sutter S.L., Brumbaugh J.A., and Patonay G. Continuous, on-line DNA sequencing using a versatile infrared laser scanner/electrophoresis apparatus. Electrophoresis 13 (1992) 487-494
13. Rusch, T. L.; Petsinger, J.; Christensen, C.; Vaske, D. A.; Brumley, R. L.; Luckey, J. A.; Weber, J. L. Scanning fluorescence detector for high-throughput DNA genotyping. Proceedings, Advances in DNA Monitoring Technologies, Biomedical Optics Society, Int. Soc. Optical Eng. (SPIE) 1996, 2680, pp. 316-325.
14. Weber J.L., and Broman K.W. Genotyping for human whole genome scans: past, present and future. In: Rao D.C., and Province M.A. (Eds). Advances in Genetics Vol. 42 (2001), Academic Press 77-96