Gene expression profiling of peripheral blood mononuclear cells (PBMC) from Mycobacterium bovis infected cattle after in vitro antigenic stimulation with purified protein derivative of tuberculin (PPD)

Veterinary Immunology and Immunopathology

Volumn 113, Issue 1-2, 2006, Pages 73-89

  Meade, Kieran G ^a   Gormley, Eamonn ^a   Park, Stephen D E ^a   Fitzsimons, Tara ^a   Rosa, Guilherme J M ^b   Costello, Eamon ^c   Keane, Joseph ^d   Coussens, Paul M ^b   MacHugh, David E ^a  

^a UNIVERSITY COLLEGE DUBLIN   (Ireland)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c CENTRAL VETERINARY RESEARCH LABORATORY   (Ireland)

^d ST JAMES S HOSPITAL   (Ireland)

Author keywords

Cattle; Gene expression; Microarray; Tuberculin; Tuberculosis

Indexed keywords

CONCANAVALIN A; GAMMA INTERFERON; TRANSCRIPTOME; TUBERCULIN;

ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; CATTLE; CATTLE DISEASE; CONTROLLED STUDY; DATA ANALYSIS; DOWN REGULATION; GENE EXPRESSION; GENETIC TRANSCRIPTION; IMMUNOSTIMULATION; MICROARRAY ANALYSIS; MONONUCLEAR CELL; MYCOBACTERIOSIS; MYCOBACTERIUM BOVIS; NONHUMAN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STATISTICAL ANALYSIS; STATISTICAL SIGNIFICANCE; UPREGULATION;

ANIMALS; CATTLE; GENE EXPRESSION PROFILING; LEUKOCYTES, MONONUCLEAR; MYCOBACTERIUM BOVIS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; TUBERCULIN; TUBERCULOSIS, BOVINE;

AVES; BOS TAURUS; MYCOBACTERIUM BOVIS;

EID: 33746576497     PISSN: 01652427     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetimm.2006.04.012     Document Type: Article

References (40)

1. Andersen A.B., and Brennan P. Proteins and antigens of Mycobacterium tuberculosis. In: Bloom B.R. (Ed). Tuberculosis: Pathogenesis, Protection, and Control (1994), American Society for Microbiology (ASM) Press, Washington, DC 307-332
2. Bairoch A., Apweiler R., Wu C.H., Barker W.C., Boeckmann B., Ferro S., Gasteiger E., Huang H., Lopez R., Magrane M., Martin M.J., Natale D.A., O'Donovan C., Redaschi N., and Yeh L.S. The Universal Protein Resource (UniProt). Nucleic Acids Res. 33 (2005) D154-D159
3. Cosma C.L., Sherman D.R., and Ramakrishnan L. The secret lives of the pathogenic mycobacteria. Annu. Rev. Microbiol. 57 (2003) 641-676
4. Costello E., Quigley F., Flynn O., Gogarty A., McGuirk J., Murphy A., and Dolan L. Laboratory examination of suspect tuberculous lesions detected on abattoir postmortem examination of cattle from non-reactor herds. Ir. Vet. J. 51 (1998) 248-250
5. Coussens P.M., Colvin C.J., Rosa G.J., Perez Laspiur J., and Elftman M.D. Evidence for a novel gene expression program in peripheral blood mononuclear cells from Mycobacterium avium subsp. paratuberculosis-infected cattle. Infect. Immun. 71 (2003) 6487-6498
6. Coussens P.M., Colvin C.J., Wiersma K., Abouzied A., and Sipkovsky S. Gene expression profiling of peripheral blood mononuclear cells from cattle infected with Mycobacterium paratuberculosis. Infect. Immun. 70 (2002) 5494-5502
7. Coussens P.M., Jeffers A., and Colvin C. Rapid and transient activation of gene expression in peripheral blood mononuclear cells from Johne's disease positive cows exposed to Mycobacterium paratuberculosis in vitro. Microb. Pathog. 36 (2004) 93-108
8. Coussens P.M., and Nobis W. Bioinformatics and high throughput approach to create genomic resources for the study of bovine immunobiology. Vet. Immunol. Immunopathol. 86 (2002) 229-244
9. Flynn J.L., and Chan J. Immunology of tuberculosis. Annu. Rev. Immunol. 19 (2001) 93-129
10. Francis J., Seiler R.J., Wilkie I.W., O'Boyle D., Lumsden M.J., and Frost A.J. The sensitivity and specificity of various tuberculin tests using bovine PPD and other tuberculins. Vet. Rec. 103 (1978) 420-425
11. Gormley E., Doyle M.B., McGill K., Costello E., Good M., and Collins J.D. The effect of the tuberculin test and the consequences of a delay in blood culture on the sensitivity of a gamma-interferon assay for the detection of Mycobacterium bovis infection in cattle. Vet. Immunol. Immunopathol. 102 (2004) 413-420
12. Hope J.C., Thom M.L., McCormick P.A., and Howard C.J. Interaction of antigen presenting cells with mycobacteria. Vet. Immunol. Immunopathol. 100 (2004) 187-195
13. Jenner R.G., and Young R.A. Insights into host responses against pathogens from transcriptional profiling. Nat. Rev. Microbiol. 3 (2005) 281-294
14. Koul A., Herget T., Klebl B., and Ullrich A. Interplay between mycobacteria and host signalling pathways. Nat. Rev. Microbiol. 2 (2004) 189-202
15. Livak K.J., and Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25 (2001) 402-408
16. Lubeseder-Martellato C., Guenzi E., Jorg A., Topolt K., Naschberger E., Kremmer E., Zietz C., Tschachler E., Hutzler P., Schwemmle M., Matzen K., Grimm T., Ensoli B., and Sturzl M. Guanylate-binding protein-1 expression is selectively induced by inflammatory cytokines and is an activation marker of endothelial cells during inflammatory diseases. Am. J. Pathol. 161 (2002) 1749-1759
17. Madsen S.A., Chang L.C., Hickey M.C., Rosa G.J., Coussens P.M., and Burton J.L. Microarray analysis of gene expression in blood neutrophils of parturient cows. Physiol. Genomics 16 (2004) 212-221
18. Maglott D., Ostell J., Pruitt K.D., and Tatusova T. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res. 33 (2005) D54-D58
19. McLennan A.G., Cartwright J.L., and Gasmi L. The human NUDT family of nucleotide hydrolases. Enzymes of diverse substrate specificity. Adv. Exp. Med. Biol. 486 (2000) 115-118
20. Monaghan M., Quinn P.J., Kelly A.P., McGill K., McMurray C., Ocrowley K., Bassett H.F., Costello E., Quigley F., Rothel J.S., Wood P.R., and Collins J.D. A pilot trial to evaluate the gamma-interferon assay for the detection of Mycobacterium bovis infected cattle under Irish conditions. Ir. Vet. J. 50 (1997) 229-232
21. Mott J.D., and Werb Z. Regulation of matrix biology by matrix metalloproteinases. Curr. Opin. Cell Biol. 16 (2004) 558-564
22. Naschberger E., Werner T., Vicente A.B., Guenzi E., Topolt K., Leubert R., Lubeseder-Martellato C., Nelson P.J., and Sturzl M. Nuclear factor-kappaB motif and interferon-alpha-stimulated response element co-operate in the activation of guanylate-binding protein-1 expression by inflammatory cytokines in endothelial cells. Biochem. J. 379 (2004) 409-420
23. Pollock J.M., and Neill S.D. Mycobacterium bovis infection and tuberculosis in cattle. Vet. J. 163 (2002) 115-127
24. Pruitt K.D., Tatusova T., and Maglott D.R. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 33 (2005) D501-D504
25. Quackenbush J. Microarray data normalization and transformation. Nat. Genet. 32 Suppl. (2002) 496-501
26. Rajeevan M.S., Ranamukhaarachchi D.G., Vernon S.D., and Unger E.R. Use of real-time quantitative PCR to validate the results of cDNA array and differential display PCR technologies. Methods 25 (2001) 443-451
27. Rajeevan M.S., Vernon S.D., Taysavang N., and Unger E.R. Validation of array-based gene expression profiles by real-time (kinetic) RT-PCR. J. Mol. Diagn. 3 (2001) 26-31
28. Ririe K.M., Rasmussen R.P., and Wittwer C.T. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal. Biochem. 245 (1997) 154-160
29. Rothel J.S., Jones S.L., Corner L.A., Cox J.C., and Wood P.R. The gamma-interferon assay for diagnosis of bovine tuberculosis in cattle: conditions affecting the production of gamma-interferon in whole blood culture. Aust. Vet. J. 69 (1992) 1-4
30. Sanceau J., Boyd D.D., Seiki M., and Bauvois B. Interferons inhibit tumor necrosis factor-alpha-mediated matrix metalloproteinase-9 activation via interferon regulatory factor-1 binding competition with NF-kappa B. J. Biol. Chem. 277 (2002) 35766-35775
31. SAS-Institute, 2000. SAS/STAT Software (version 8.0) (Cary, NC).
32. Stajich J.E., Block D., Boulez K., Brenner S.E., Chervitz S.A., Dagdigian C., Fuellen G., Gilbert J.G., Korf I., Lapp H., Lehvaslaiho H., Matsalla C., Mungall C.J., Osborne B.I., Pocock M.R., Schattner P., Senger M., Stein L.D., Stupka E., Wilkinson M.D., and Birney E. The Bioperl toolkit: perl modules for the life sciences. Genome Res. 12 (2002) 1611-1618
33. Staudt L.M., and Brown P.O. Genomic views of the immune system. Annu. Rev. Immunol. 18 (2000) 829-859
34. Tooker B.C., Burton J.L., and Coussens P.M. Survival tactics of M. paratuberculosis in bovine macrophage cells. Vet. Immunol. Immunopathol. 87 (2002) 429-437
35. Wain H.M., Lush M.J., Ducluzeau F., Khodiyar V.K., and Povey S. Genew: the Human Gene Nomenclature Database. Nucleic Acids Res. 32 (2004 updates) D255-D257
36. Wolfinger R.D., Gibson G., Wolfinger E.D., Bennett L., Hamadeh H., Bushel P., Afshari C., and Paules R.S. Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8 (2001) 625-637
37. Wurmbach E., Yuen T., and Sealfon S.C. Focused microarray analysis. Methods 31 (2003) 306-316
38. Yang Y.H., Dudoit S., Luu P., Lin D.M., Peng V., Ngai J., and Speed T.P. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30 (2002) e15
39. Yao J., Burton J.L., Saama P., Sipkovsky S., and Coussens P.M. Generation of EST and cDNA microarray resources for the study of bovine immunobiology. Acta Vet. Scand. 42 (2001) 391-405
40. Yuen T., Wurmbach E., Pfeffer R.L., Ebersole B.J., and Sealfon S.C. Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res. 30 (2002) e48