Rangewide population genetic structure of the African malaria vector Anopheles funestus

Molecular Ecology

Volumn 14, Issue 14, 2005, Pages 4235-4248

  Michel, A P ^a   Ingrasci, M J ^a   Schemerhorn, B J ^a   Kern, M ^a   Le Goff, G ^b   Coetzee, M ^c,d   Elissa, N ^e   Fontenille, D ^f   Vulule, J ^g   Lehmann, T ^h   Sagnon, N'F ⁱ   Costantini, C ^j   Besansky, N J ^a  

^a UNIVERSITY OF NOTRE DAME   (United States)

^b INSTITUT PASTEUR DE MADAGASCAR   (Madagascar)

^c NATIONAL INSTITUTE FOR COMMUNICABLE DISEASES   (South Africa)

^d UNIVERSITY OF THE WITWATERSRAND   (South Africa)

^e CENTRE INTERNATIONAL DE RECHERCHES MÉDICALES DE FRANCEVILLE   (Gabon)

^f INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^g KENYA MEDICAL RESEARCH INSTITUTE   (Kenya)

^h NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

ⁱ Burkina Faso   (Burkina Faso)

^j Institut de recherche pour le developpement Ouagadougou   (Burkina Faso)

more..

Author keywords

Africa; Anopheles funestus; Malaria vector; Microsatellites; Mitochondrial DNA; Population genetics

Indexed keywords

ANOPHELES FUNESTUS; ANOPHELES GAMBIAE;

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

AFRICA SOUTH OF THE SAHARA; ANIMAL; ANOPHELES; ARTICLE; CLUSTER ANALYSIS; COMPARATIVE STUDY; DISEASE CARRIER; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POPULATION DYNAMICS; POPULATION GENETICS;

AFRICA SOUTH OF THE SAHARA; ANIMALS; ANOPHELES; BASE SEQUENCE; CLUSTER ANALYSIS; DNA, MITOCHONDRIAL; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; INSECT VECTORS; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; POPULATION DYNAMICS; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

EID: 33746415756     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02754.x     Document Type: Article

References (54)

1. Avise JC (2004) Molecular Markers, Natural History, and Evolution, 2nd edn. Sinauer Associates, Sunderland, Massachusetts.
2. Barnes MJ, Lobo NF, Coulibaly MB et al. (2005) SINE insertion polymorphism on the X chromosome differentiates Anopheles gambiae molecular forms. Insect Molecular Biology, 14, 353-363.
3. Braginets OP, Minakawa N, Mbogo CM, Yan G (2003) Population genetic structure of the African malaria mosquito Anopheles funestus in Kenya. American Journal of Tropical Medicine and Hygiene, 69, 303-308.
4. Brain CK, Meester J (1964) Past climatic changes as biological isolating mechanisms in southern Africa. In: Ecological Studies in Southern Africa (ed. Davis DHS), pp. 332-340. Dr W. Junk Publishers, The Hague, The Netherlands.
5. Brookfield JF (1996) A simple new method for estimating null allele frequency from heterozygote deficiency. Molecular Ecology, 5, 453-455.
6. Brower AV (1994) Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proceedings of the National Academy of Sciences, USA, 91, 6491-6495.
7. Burney DA, Burney LP, Godfrey LR et al. (2004) A chronology for late prehistoric Madagascar. Journal of Human Evolution, 47, 25-63.
8. Cavalli-Sforza LL, Edwards AW (1967) Phylogenetic analysis. Models and estimation procedures. American Journal of Human Genetics, 19, 233-257.
9. Clement M, Posada D, Crandall KA (2000) tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1659.
10. Coetzee M, Fontenille D (2004) Advances in the study of Anopheles funestus, a major vector of malaria in Africa. Insect Biochemistry and Molecular Biology, 34, 599-605.
11. Cohuet A, Dia I, Simard F, Raymond M, Fontenille D (2004) Population structure of the malaria vector Anopheles funestus in Senegal based on microsatellite and cytogenetic data. Insect Molecular Biology, 13, 251-258.
12. Coluzzi M, Sabatini A, Della Torre A, Di Deco MA, Petrarca V (2002) A polytene chromosome analysis of the Anopheles gambiae species complex. Science, 298, 1415-1418.
13. Cooke HBS (1964) The pleistocene environment in southern Africa. In: Ecological Studies in Southern Africa (ed. Davis DHS), pp. 1-23. Dr W. Junk Publishers, The Hague, The Netherlands.
14. Costantini C, Sagnon NF, Ilboudo-Sanogo E, Coluzzi M, Boccolini D (1999) Chromosomal and bionomic heterogeneities suggest incipient speciation in Anopheles funestus from Burkina Faso. Parassitologia, 41, 595-611.
15. Crandall KA, Templeton AR (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics, 134, 959-969.
16. Dia I, Lochouarn L, Boccolini D, Costantini C, Fontenille D (2000) Spatial and temporal variations of the chromosomal inversion polymorphism of Anopheles funestus in Senegal. Parasite, 7, 179-184.
17. Dieringer D, Schlotterer C (2003) MICROSATELLITE ANALYSER (MSA): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes, 3, 167-169.
18. Donnelly MJ, Licht MC, Lehmann T (2001) Evidence for recent population expansion in the evolutionary history of the malaria vectors Anopheles arabiensis and Anopheles gambiae. Molecular Biology and Evolution, 18, 1353-1364.
19. Fontenille D, Rakotoarivony I (1988) Reappearance of Anopheles funestus as a malaria vector in the Antananarivo region, Madagascar. Transactions of the Royal Society of Tropical Medicine and Hygiene, 82, 644-645.
20. Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
21. Garros C, Koekemoer LL, Kamau L et al. (2004) Restriction fragment length polymorphism method for the identification of major African and Asian malaria vectors within the Anopheles funestus and An. minimus groups. American Journal of Tropical Medicine and Hygiene, 70, 260-265.
22. Gillies MT, Coetzee M (1987) A Supplement to the Anophelinae of Africa South of the Sahara. South African Institute for Medical Research, Johannesburg, South Africa.
23. Gillies MT, De Meillon B (1968) The Anophelinae of Africa South of the Sahara, 2nd edn. South African Institute for Medical Research, Johannesburg, South Africa.
24. Goudet J (2001) FSTAT, Version 2.9.3, A program to estimate and test gene diversities and fixation indices. Available from www.unil.ch/izea/softwares/ fstat.html.
25. Green CA, Hunt RH (1980) Interpretation of variation in ovarian polytene chromosomes of Anopheles funestus Giles, A. parensis Gillies, and A. aruni? Genetica, 51, 187-195.
26. Hume JC, Lyons EJ, Day KP (2003) Human migration, mosquitoes and the evolution of Plasmodium falciparum. Trends in Parasitology, 19, 144-149.
27. Joy DA, Feng X, Mu J et al. (2003) Early origin and recent expansion of Plasmodium falciparum. Science, 300, 318-321.
28. Kimmel M, Chakraborty R, King JP et al. (1998) Signatures of population expansion in microsatellite repeat data. Genetics, 148, 1921-1930.
29. King JP, Kimmel M, Chakraborty R (2000) A power analysis of microsatellite-based statistics for inferring past population growth. Molecular Biology and Evolution, 17, 1859-1868.
30. Koekemoer L, Weeto MM, Kamau L, Hunt RH, Coetzee M (2002) A cocktail polymerase chain reaction (PCR) assay to identify members of the Anopheles funestus (Diptera: Culicidae) group. American Journal of Tropical Medicine and Hygiene, 66, 804-811.
31. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics, 17, 1244-1245.
32. Lehmann T, Hawley WA, Grebert H et al. (1999) The Rift Valley complex as a barrier to gene flow for Anopheles gambiae in Kenya. Journal of Heredity, 90, 613-621.
33. Lehmann T, Blackston CR, Besansky NJ et al. (2000) The Rift Valley complex as a barrier to gene flow for Anopheles gambiae in Kenya: the mtDNA perspective. Journal of Heredity, 91, 165-168.
34. Lehmann T, Licht M, Elissa N et al. (2003) Population structure of Anopheles gambiae in Africa. Journal of Heredity, 94, 133-147.
35. Mank JE, Avise JC (2003) Microsatellite variation and differentiation in North Atlantic eels. Journal of Heredity, 94, 310-314.
36. Mank JE, Avise JC (2004) Individual organisms as units of analysis: Bayesian-clustering alternatives in population genetics. Genetical Research, 84, 135-143.
37. Michel AP, Guelbeogo WM, Grushko O et al. (2005) Molecular differentiation between chromosomally defined incipient species of Anopheles funestus. Insect Molecular Biology, 14, 375-387.
38. Monaghan MT, Gattolliat JL, Sartori M et al. (2005) Transoceanic and endemic origins of the small minnow mayflies (Ephemeroptera, Baetidae) of Madagascar. Proceedings of the Royal Society of London. Series B, Biological Sciences, 272, 1829-1836.
39. Mouchet J, Faye O, Juivez J, Manguin S (1996) Drought and malaria retreat in the Sahel, West Africa. Lancet, 348, 1735-1736.
40. Nei M, Tajima F, Tateno Y (1983) Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. Journal of Molecular Evolution, 19, 153-170.
41. Palsson S (2004) Isolation by distance, based on microsatellite data, tested with spatial autocorrelation (SPAIDA) and assignment test (SPASSIGN). Molecular Ecology Notes, 4, 143-145.
42. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
43. Rabinowitz PD, Coffin MF, Falvey D (1983) The separation of Madagascar and Africa. Science, 220, 67-69.
44. Ramos-Onsins SE, Rozas J (2002) Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution, 19, 2092-2100.
45. Raymond M, Rousset F (1995) genepop (version 1.2): a population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
46. Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DNASP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
47. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN: A software for population genetics data analysis, Version 2.000. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Switzerland.
48. Sharakhov I, Braginets O, Grushko O et al. (2004) A microsatellite map of the African human malaria vector Anopheles funestus. Journal of Heredity, 95, 29-34.
49. Stump AD, Shoener JA, Costantini C, Sagnon N, Besansky NJ (2005) Sex-linked differentiation between incipient species of Anopheles gambiae. Genetics, 169, 1509-1519.
50. Temu EA, Hunt RH, Coetzee M (2004) Microsatellite DNA polymorphism and heterozygosity in the malaria vector mosquito Anopheles funestus (Diptera: Culicidae) in east and southern Africa. Acta Tropica, 90, 39-49.
51. van Oosterhout C, Hutchinson WF, Wills DPM, Shipley PF (2004) MICROCHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538.
52. WHO (2003) World Health Report 2003. World Health Organization, Geneva, Switzerland.
53. Wright S (1931) Evolution in Mendelian populations. Genetics, 16, 97-159.
54. Zahar AR (1985) Vector Bionomics in the Epidemiology and Control of Malaria. World Health Organization, Geneva, Switzerland.