Isolation, characterization, and evaluation of microsatellite loci for cultivar identification in the ornamental pampas grass Cortaderia selloana

Journal of the American Society for Horticultural Science

Volumn 131, Issue 4, 2006, Pages 499-505

  Ahmad, Riaz ^a   Okada, Miki ^a   Firestone, Jeffrey L ^a   Mallek, Chris R ^a   Jasieniuk, Marie ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Danthonioideae; Poaceae; Simple sequence repeat; SSR markers

Indexed keywords

CORTADERIA; CORTADERIA FULVIDA; CORTADERIA JUBATA; CORTADERIA PILOSA; CORTADERIA RICHARDII; CORTADERIA RUDIUSCULA; CORTADERIA SELLOANA; CORTADERIA TOETOE;

EID: 33746358864     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.131.4.499     Document Type: Article

References (47)

1. Ahmad, R., D. Struss, and S.M. Southwick. 2003. Development and characterization of microsatellite markers in citrus. J. Amer. Soc. Hort. Sci. 128:584-590.
2. Barker, N.P., H.P. Linder, C.M. Morton, and M. Lyle. 2003. The paraphyly of Cortaderia (Danthonioideae; Poaceae): Evidence from morphology and chloroplast and nuclear DNA sequence data. Ann. Missouri Bot. Gardens 90:1-24.
3. Becher, S.A., K. Steinmetz, K. Weising, S. Boury, D. Peltier, J-P. Renou, G. Kahl, and K. Wolf. 2000. Microsatellites for cultivar identification in Pelargonium. Theor. Appl. Genet. 101:643-651.
4. Bowcock, A.M., A. Ruiz-Linares, J. Tomfohrde, E. Minch, J.R. Kidd, and L.L. Cavalli-Sforza. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457.
5. Brady, J.L., N.S. Scott, and M.R. Thomas. 1996. DNA typing of hops (Humulus lupulus) through application of RAPD and microsatellite marker sequences conserved to sequence tagged sites (STS). Euphytica 91:277-284.
6. Cabrera, A.L. 1953. Manual de la flora de los Alrededores de Buenos Aires. Editorial Acme, Buenos Aires, Argentina.
7. Cai, H.-W., N. Yuyama, H. Tamaki, and A. Yoshizawa. 2003. Isolation and characterization of simple sequence repeat markers in the hexaploid forage grass timothy (Phleum pratense L.). Theor. Appl. Genet. 107:1337-1349.
8. Carriero, F., G. Fontanazza, F. Cellini, and G. Giorio. 2002. Identification of simple sequence repeats (SSRs) in olive (Olea europaea L.). Theor. Appl. Genet. 104:301-307.
9. Chase, M.W. and H.H. Hills. 1991. Silica gel: An ideal material for field preservation of leaf samples for DNA studies. Taxon 40:215-220.
10. Connor, H.E. 1973. Breeding systems in Cortacleria (Gramineae). Evolution 27:663-678.
11. Connor, H.E. 1983. Cortaderia (Gramineae): Interspecific hybrids and the breeding systems. Heredity 51:395-403.
12. Connor, H.E. and E. Edgar. 1974. Names and types in Cortaderia Stapf (Gramineae). Taxon 23:595-605.
13. Cordeiro, G.M., G.O. Taylor, and R.J. Henry. 2000. Characterization of microsatellite markers from sugarcane (Saccharum sp.) a highly polyploid species. Plant. Sci. 155:161-168.
14. Costas-Lippmann, M. 1976. Ecology and reproductive biology of the genus Cortaderia in California. PhD Diss., Univ. of California, Berkeley.
15. Costas-Lippmann, M. 1977. More on the weedy pampas grass in California. Fremontia 4:25-27.
16. Cronn, R., M. Cedroni, T. Haselkorn, C. Grover, and J.F. Wendel. 2002. PCR-medialed recombination in amplification products derived from polyploid cotton. Theor. Appl. Genet. 104:482-489.
17. Darke, R. 1999. The color encyclopedia of ornamental grasses. Timber Press, Portland, Ore.
18. Darke, R. 2004. Timber Press pocket guide to ornamental grasses. Timber Press, Portland, Ore.
19. Dieringer, D. and C. Schlötterer. 2003. MICROSATELLITEANALYSER (MSA): A platform independent analysis tool tor large microsatellite data sets. Mol. Ecol. Notes 3:167-169.
20. DiTomaso, J.M., E. Healy, C.E. Bell, J. Drewitz, and A. Tschohl. 1999. Pampasgrass and jubatagrass threaten California coastal habitats. Univ. Calif. Weed Res. Info. Ctr. Coop. Ext. Lflt. 99-1.
21. Doyle, J.J. and J.L. Doyle. 1987. A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem. Bul. 19:11-15.
22. Esselink, G.D., M.J.M. Smulders, and B. Vosman. 2003. Identification of cut rose (Rosa hybrida) and rootstock varieties using robust sequence tagged microsatellite site markers. Theor. Appl. Genet. 106:277-286.
23. Felsenstein, J. 2005. PHYLIP (Phylogeny inference package) version 3.57c. 4 Mar. 2006. 〈http:/evolution.genetics.washington.edu/phylip.html〉
24. Greenlee, J. 1992. The encyclopedia of ornamental grasses. Rodale Press, Em-maus, Pa.
25. Grounds, R. 1979. Ornamental grasses. Pelham Books Ltd., London.
26. Grounds, R. 1998. The plantfinder's guide to ornamental grasses. Timber Press, Portland, Ore.
27. Hamilton, M.B., E.L. Pincus, A. Di Fiore, and R.C. Fleischer, 1999. Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. Biotechniques 27:500-507.
28. rd ed. Sinauer, Sunderland, Mass.
29. nd ed. U.S. Dept. Agr. Misc. Publ. 200.
30. Hornback, B. 1994. In praise of pampas grass. Pacific Hort. 56:47-52.
31. Jones, E.S., M.P. Dupal, R. Kölliker, M.C. Drayton, and J.W. Forster. 2001. Development and characterization of simple sequence repeat (SSR) markers for perennial ryegrass (Lolium perenne L.). Theor. Appl. Genet. 102:405-415.
32. Lagercrantz, U., H. Ellegren, and L. Andersson. 1993. The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res. 21:1111-1115.
33. Liu, Z.W., R.L. Jarret, S. Kresovich, and R.R. Duncan. 1995. Characterisation and analysis of simple sequence repeat (SSR loci) in seashore paspalum (Paspalum vaginatum Swartz.). Theor. Appl. Genet. 91:47-52.
34. Lyle, M. 1996. Change in name and status of a pampas grass (Cortaderia, Poaceae: Arundinoideae) from Bolivia. Novon 6:72-77.
35. Madison, J. 1992. Pampas grasses: One a weed and one a garden queen. Pacific Hort. 54:48-53.
36. Maguire, T.L. 2001. Producing and exploiting enriched microsatellite libraries. p. 193-209. In: R.J. Henry (ed.). Plant genotyping: The DNA fingerprinting of plants. CABI, New York.
37. Morgante, M. and A.M. Olivieri. 1993. PCR-amplified microsatellites as markers in plant genetics. Plant J. 3:175-182.
38. Oakes, A.J. 1990. Ornamental grasses and grasslike plants. Van Nostrand Renhold, New York.
39. Robinson, E.R. 1984. Naturalized species of Cortaderia (Poaceae) in southern Africa. South African J. Bot. 3:343-346.
40. Rossetto, M., A. McLauchlan, F.C.L. Harriss, P.J. Henry, P.R. Baverstock, L.S. Lee, T.L. Maguire, and K.J. Edwards. 1999. Abundance and polymorphism of microsatellite markers in the tea tree (Melaleuca alternifolia, Myrtaceae). Theor. Appl. Genet. 98:1091-1098.
41. Rozen, S. and H. Skaletsky. 2000. Primer3 on the WWW for general users and for biologist programmers, p. 365-386. In: S. Krawetz and S. Misener (eds.). Bioinformatics methods and protocols in the series methods in molecular biology. Humana Press, Totowa, N.J.
42. Saal, B. and G. Wricke. 1999. Development of simple sequence repeats in rye (Secale cereale L.). Genome 42:964-972.
43. Smulders, M.J.M., Y. Noordijk, W. Rus-Kortekaas, G.M.M. Bredemeijer, and B. Vosman. 2003. Microsatellite genotyping of carnation varieties. Theor. Appl. Genet. 106:1191-1195.
44. Smyth, W. 1908. Ornamental grasses (Gramineae). J. Royal Hort. Soc. 33:107.
45. Sneath, P.H.A. and R.R. Sokal. 1973. Numerical taxonomy: The principles and practice of numerical classification. Freeman, San Francisco.
46. Tang, S., J-K. Yu, M.B. Slabaugh, D.K. Shintani, and S.J. Knapp. 2002. Simple sequence repeat map of the sunflower genome. Theor. Appl. Genet. 105:1124-1136.
47. Wang, Z., J.L. Weber, G. Zhong, and S.D. Tanksley, 1994. Survey of plant short tandem DNA repeats. Theor. Appl. Genet. 88:1-6.