Evaluation of the API 50CH and API ZYM systems for rapid characterization of Clavibacter michiganensis subsp. sepedonicus, causal agent of potato ring rot

European Journal of Plant Pathology

Volumn 115, Issue 4, 2006, Pages 443-451

  Palomo, José Luis ^a   López, María M ^b   García Benavides, Pablo ^a   Velázquez, Encarna ^c   Martínez Molina, Eustoquio ^c  

^a Regional Diagnostic Centre (CRD)   (Spain)

^b INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

^c UNIVERSITY OF SALAMANCA   (Spain)

Author keywords

Characterization; Clavibacter; Miniaturized systems; Potato pathogens

Indexed keywords

BACTERIAL DISEASE; ENZYME ACTIVITY; HOMOGENEITY; POTATO; TAXONOMY;

EURASIA; EUROPE; EUROPEAN UNION;

BACTERIA (MICROORGANISMS); CLAVIBACTER MICHIGANENSIS SUBSP. SEPEDONICUS; SOLANUM TUBEROSUM;

EID: 33746267344     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-006-9032-5     Document Type: Article

References (26)

1. Anon. (1993) Council Directive 93/85/EEC on the control of potato ring rot Official. Journal of the European Communities L 259: 1-25.
2. Anon. (2000) Council Directive 2000/29 on protective measures against the introduction in to the Community of organisms harmful to plants or plant products and against their spread within the Community Official Journal of the European Communities L 169: 1-112.
3. Beckhoven JRCM, vanStead DE and vander Wolf JM (2002) Detection of Clavibacter michiganensis subsp. sepedonicus by AmpliDet RNA, a new technology based on real time monitoring of NASBA amplicons with a molecular beacon. Journal of Applied Microbiology 93(5): 840-849.
4. Charteris WP, Kelly PM, Morelli L and Collins JK (2001) Quality control of Lactobacillus strains for use with the API 50CH and API ZYM systems at 37°C. Journal of Basic Microbiology 41(5): 241-251.
5. DeBoer SH, Ward LJ, Li X and Chittaranjan S (1995) Attenuation of PCR inhibition in the presence of plant compounds by addition of BLOTTO. Nucleic Acids Research 23(13): 2567-2568.
6. DeBruyne E, Swings J and Kersters K (1992) Enzymatic relatedness amongst phytopathogenic coryneform bacteria and its potential use for their identification. Systematic Applied Microbiology 15: 393-401.
7. Döpfer H, Stackebrandt E and Fiedler F (1982) Nucleic acid hybridization studies on Microbacterium, Curtobacterium, Agromyces and related taxa. Journal of General Microbiology 128: 1697-1708.
8. Fessehaie A, DeBoer SH and Levesque CA (2003) An oligonucleotide array for the identification and differentiation of bacteria pathogenic on potato. Phytopathology 93(3): 262-269.
9. Haque A and Russell NJ (2005) Phenotypic and genotypic characterisation of Bacillus cereus isolates from Bangladeshi rice. International Journal of Food Microbiology 98(1): 23-34.
10. Harris-Baldwin A and Gudmestad NC (1996) Identification of phytopathogenic coryneform bacteria using the Biolog automated microbial identification system. Plant Disease 80(8): 874-878.
11. Janse JD and VanVaerenbergh J (1987) Interpretation of the EC method for detection of latent Corynebacterium sepedonicum infections in potato. EPPO Bulletin 17: 1-10.
12. Lazar I (1968) Serological relationships of Corynebacterium. Journal of General Microbiology 52: 77-88.
13. Li X, DeBoer SH and Ward LJ (1997) Improved microscopic identification of Clavibacter michiganensis subsp. sepedonicus cells by combining in situ hybridization with immunofluorescence. Letters in Applied Microbiology 24(6): 431-434.
14. Louws FJ, Bell J, Medina-Mora CM, Smart CD, Opgenorth D, Ishimaru CA, Hausbeck MK, deBruijn FJ and Fulbright DW (1998) rep-PCR-mediated genomic fingerprinting: a rapid and effective method to identify Clavibacter michiganensis. Phytopathology 88: 862-868.
15. Palomo JL, Velázquez E, Mateos PF, García-Benavides P and Martínez-Molina E (2000) Rapid identification of Clavibacter michiganensis subspecies sepedonicus based on stable low molecular weight RNA (LMW RNA) profiles. European Journal of Plant Pathology 106: 789-793.
16. Pastrik KH (2000) Detection of Clavibacter michiganensis subsp. sepedonicus in potato tubers by multiplex PCR with coamplification of host DNA. European Journal of Plant Pathology 106(2): 155-165.
17. Pastrik KH and Rainey FA (1999) Identification and differentiation of Clavibacter michiganensis subspecies by polymerase chain reaction-based techniques. Journal of Phytopathology 147: 687-693.
18. Rivas R, Velázquez E, Palomo JL, Mateos PF, García- Benavides P and Martínez-Molina E (2002) Rapid identification of Clavibacter michiganensis subspecies sepedonicus using two primers random amplified polymorphic DNA (TP-RAPD). European Journal of Plant Pathology 108: 179-184.
19. Slack SA (1987) Biology and ecology of Corynebacterium sepedonicum. American Potato Journal 64(12): 665-670.
20. Smith NC, Hennessy J and Stead DE (2001) Repetitive sequence-derived PCR profiling using the BOXA1R primer for rapid identification of the plant pathogen Clavibacter michiganensis subsp. sepedonicus. European Journal of Plant Pathology 107(7): 739-748.
21. Sokal RR and Michener CD (1958) A statistical method for evaluating systematic relationships. University of Kansas Science Bulletin 38: 1409-1438.
22. Vantomme R, Baetens M, DeBruyne E, VanVaerenbergh J and DeLey J (1987) Characterization of Corynebacterium sepedonicum by API-ZYM and SDS protein polyacrilamide gel electrophoresis. Medical Faculty Landb 52: 1089-1093.
23. Vidaver AK (1967) Synthetic and complex media for rapid detection of fluorescence of phytopathogenic pseudomonads: Effect of carbon source. Applied Microbiology 15: 1523-1524.
24. Vincent JM (1970) The cultivation, isolation and maintenance of rhizobia. In: Vincent JM (ed.) A Manual for the Practical Study of Root-Nodule (pp. 1-13) Blackwell Scientific Publications, Oxford.
25. von der Weid I, Paiva E, Nobrega A, vanElsas JD and Seldin L (2000) Diversity of Paenibacillus polymyxa strains isolated from the rhizosphere of maize planted in Cerrado soil. Research in Microbiology 151(5): 369-381.
26. Wullings BA, vanBeuningen AR, Janse JD and Akkermans ADL (1998) Detection of Ralstonia solanacearum, which causes brown rot of potato, by fluorescent in situ hybridization with 23S rRNA-targeted probes. Applied and Environmental Microbiology 64(11): 4546-4555.