Identification of potyviruses infecting vanilla by direct sequencing of a short RT-PCR amplicon

Plant Pathology

Volumn 55, Issue 4, 2006, Pages 523-529

  Grisoni, M ^a   Moles, M ^a   Farreyrol, K ^a   Rassaby, L ^a   Davis, R ^b   Pearson, M ^c  

^a CIRAD   (France)

^b Secretariat of the Pacific Community   (Fiji)

^c UNIVERSITY OF AUCKLAND   (New Zealand)

Author keywords

Bean common mosaic virus subgroup; Degenerate primers; Vanilla planifolia; Vanilla tahitensis; Virus taxonomy

Indexed keywords

BIOASSAY; GENE; HOMOLOGY; INFECTIOUS DISEASE; POLYMERASE CHAIN REACTION; PROTEIN; SPECIES INVENTORY; TAXONOMY; VINE; VIRUS;

INDIAN OCEAN; PACIFIC OCEAN;

APHIDIDAE; BEAN YELLOW MOSAIC VIRUS; COWPEA APHID-BORNE MOSAIC VIRUS; ORNITHOGALUM; ORNITHOGALUM MOSAIC VIRUS; POTYVIRUS; WISTERIA; WISTERIA VEIN MOSAIC VIRUS;

EID: 33746238500     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2006.01397.x     Document Type: Article

References (30)

1. Adams MJ, Antoniw JF, Fauquet CM, 2005. Molecular criteria for genus and species discrimination within the family Potyviridae. Archives of Virology 150, 459-79.
2. Anonymous, 1984. La Vanille, 24. Papeete, French Polynesia: Service Economie Rurale.
3. Baker CA, Zettler FW, 1988. Viruses infecting wild and cultivated species of the Commelinaceae. Plant Disease 72, 513-8.
4. Benezet H, Picard E, Côme B, Grisoni M, Leclerq-Le Quiliec F, Gambin O, Jeuffrault E, 2000. Les virus du vanillier à la Réunion. Phytoma, la Défense des Végétaux 526, 40-2.
5. Bhat AI, Venugopal MN, Pant RP, Bhai RS, 2004. Occurrence and distribution of viral diseases on vanilla (Vanilla planifolia Andrews) in India. Journal of Spices and Aromatic Crops 13, 143-8.
6. Brunt AA, 1992. The general properties of potyviruses. Archives of Virology 20, 3-16.
7. Brunt A, Crabtree K, Dallwitz M, Gibbs A, Watson L, Zurcher E, 1996. Plant Viruses Online. Descriptions and Lists from the VIDE Database Version 20th August 1996). [http://image.fs.uidaho.edu/vide/refs.htm].
8. Chen J, Chen J, Adams MJ, 2001. A universal PCR primer to detect members of the Potyviridae and its use to examine the taxonomic status of several members of the family. Archives of Virology 146, 757-66.
9. Clover GRG, Tang Z, Smales TE, Pearson MN, 2003. Taxonomy of Wisteria vein mosaic virus and extensions to its host range and geographical distribution. Plant Pathology 52, 92-6.
10. Colinet D, Nguyen M, Kummert J, Lepoivre P, Xia FZ, 1998. Differentiation among potyviruses infecting sweet potato based on genus- and virus-specific reverse transcription polymerase chain reaction. Plant Disease 82, 223-9.
11. Desbiez C, Lecoq H, 2004. The nucleotide sequence of Watermelon mosaic virus (WMV, Potyvirus) reveals interspecific recombination between two related potyviruses in the 5′ part of the genome. Archives of Virology 149, 1619-32.
12. Farreyrol K, 2005. Characterisation and detection of viruses (Cucumovirus, Potyvirus) infecting vanilla in Réunion Island and Polynesian Islands. Auckland, New Zealand: University of Auckland. PhD Thesis.
13. Fauquet C, Mayo MA, Maniloff J, Desselberger U, Ball LA, 2005. Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses. Oxford, UK: Elsevier.
14. Gibbs A, Mackenzie A, 1997. A primer pair for amplifying part of all potyvirids by RT-PCR. Journal of Virological Methods 63, 9-16.
15. Gibbs A, Mackenzie A, Blanchfield A, Cross P, Wilson C, Kitajima E, Nightingale M, Clements M, 2000. Viruses of orchids in Australia: their identification, biology and control. Australian Orchid Review 65, 10-21.
16. Grisoni M, Davidson F, Hyrondelle C, Farreyrol K, Caruana ML, Pearson M, 2004. Nature, incidence and symptomatology of viruses infecting Vanilla tahitensis in French Polynesia. Plant Disease 88, 119-24.
17. Hall TA, 1999. BioEdit: a user-friendly biological sequence alignment, editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95-8.
18. Hammond J, Lawson RH, 1988. A strain of Bean yellow mosaic virus is aphid-transmitted from orchid. Acta Horticulturae 234, 365-70.
19. Langeveld SA, Dore J-M, Memelink J, Derks AFLM, Van der Vlugt CIM, Asjes CJ, Bol JF, 1991. Identification of potyviruses using the polymerase chain reaction with degenerate primers. Journal of General Virology 72, 1531-41.
20. Liefting L, Pearson MN, Pone SP, 1992. The isolation and evaluation of two naturally occurring mild strains of Vanilla necrosis potyvirus for control by cross-protection. Journal of Phytopathology 136, 9-15.
21. Marie-Jeanne V, Ioos R, Peyre J, Alliot B, Signoret P, 2000. Differentiation of Poaceae potyviruses by reverse transcription-polymerase chain reaction and restriction analysis. Journal of Phytopathology 148, 141-51.
22. Pappu SS, Brand R, Pappu HR, Rybicki EP, Gough KH, Frenkel MJ, Niblett CL, 1993. A polymerase chain reaction method adapted for selective amplification and cloning of 3′ sequences of potyviral genomes: application to dasheen mosaic virus. Journal of Virological Methods 41, 9-20.
23. Pearson MN, 1997. Assessment of Vanilla Virus Problem in Ile de la Réunion. Auckland, New Zealand: University of Auckland.
24. Pearson MN, Brunt AA, Pone SP, 1990. Some hosts and properties of a potyvirus infecting Vanilla fragrans (Orchidaceae) in the Kingdom of Tonga. Journal of Phytopathology 128, 46-54.
25. Pearson MN, Jackson GVH, Pone SP, Howitt RLJ, 1993. Vanilla viruses in the South Pacific. Plant Pathology 42, 127-31.
26. Perrier X, Flori A, Bonnot F, 2003. Data analysis methods. In: Hamon P, Seguin M, Perrier X, Glaszmann JC, eds. Genetic Diversity of Cultivated Tropical Plants. Enfield, CT, USA: Science Publishers.
27. Shukla DD, Ward CT, 1988. Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group. Journal of General Virology 69, 2703-10.
28. Thomas J, Vijayan AK, Suseeia B, 2002. Vanilla diseases in India and their management. Indian Journal of Arecanut, Spices and Medicinal Plants 4, 143-9.
29. Wang YY, Beck DL, Gardner RC, Pearson MN, 1993. Nucleotide sequence, serology and symptomatology suggest that vanilla necrosis potyvirus is a strain of watermelon mosaic virus II. Archives of Virology 129, 93-103.
30. Wisler GC, Zettler FW, Mu L, 1987. Virus infections of Vanilla and other orchids in French Polynesia. Plant Disease 71, 1125-9.