Ancient origin and molecular features of the novel human T-lymphotropic virus type 3 revealed by complete genome analysis

Journal of Virology

Volumn 80, Issue 15, 2006, Pages 7427-7438

  Switzer, William M ^a   Qari, Shoukat H ^a   Wolfe, Nathan D ^b   Burke, Donald S ^b   Folks, Thomas M ^a   Heneine, Walid ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; DNA; LEUCINE ZIPPER PROTEIN; NUCLEOTIDE; STRUCTURAL PROTEIN; TAX PROTEIN; TRANSCRIPTION FACTOR AP 1;

AMINO ACID SEQUENCE; ARTICLE; GENETIC RECOMBINATION; GENOME ANALYSIS; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; LONG TERMINAL REPEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PERIPHERAL LYMPHOCYTE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION; VIRUS GENOME;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; DNA, VIRAL; GENOME, VIRAL; HIV; HTLV-I INFECTIONS; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; PRIMATE T-LYMPHOTROPIC VIRUS 3; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN T-LYMPHOTROPIC VIRUS 1; HUMAN T-LYMPHOTROPIC VIRUS 2; HUMAN T-LYMPHOTROPIC VIRUS 3; PRIMATES; SIMIAN IMMUNODEFICIENCY VIRUS - AGM;

EID: 33746190716     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.00690-06     Document Type: Article

References (47)

1. Araujo, A., and W. W. Hall. 2004. Human T-lymphotropic virus type II and neurological disease. Ann. Neurol. 56:10-19.
2. Arnold, J., B. Yamamoto, M. Li, A. J. Pbipps, I. Younis, M. D. Lairmore, and P. L. Green. 2006. Enhancement of infectivity and persistence in vivo by HBZ, a natural antisense coded protein of HTLV-1. Blood 107:3976-3982.
3. Barnhart, M. K., L. M. Connor, and S. J. Marriott. 1997. Function of the human T-cell leukemia virus type 1 21-base-pair repeats in basal transcription. J. Virol. 71:337-344.
4. Basbous, J., C. Arpin, G. Gaudray, M. Piechaczyk, C. Devaux, and J.-M. Mesnard. 2003. The HBZ factor of human T-cell leukemia virus type 1 dimerizes with transcriptional factors JunB and c-Jun and modulates their transcriptional activity. J. Biol. Chem. 278:43620-43627.
5. Bindhu, M., A. Nair, and M. D. Lairmore. 2004. Role of accessory proteins of HTLV-1 in viral replication. T cell activation, and cellular gene expression. Front. Biosci. 9:2556-2576.
6. Brites, C., W. Harrington, Jr., C. Pedroso, E. Martins Netto, and R. Badaro. 1997. Epidemiological characteristics of HTLV-1 and 11 co-infection in Brazilian subjects infected by HIV-1. Braz. J. Infect. Dis. 1:42-47.
7. Callatini, S., S. A. Chevalier, R. Duprez, S. Bassot, A. Froment, R. Mahieux, and A. Gessain. 2005. Discovery of a new human T-cell lymphotropic virus (HTLV-3) in Central Africa. Retrovirology 2:30.
8. Chevalier, S., L. Meertens, C. Pise-Masison, S. Calattini, H. Park, A. A. Alhaj, M. Zhou, A. Gessain, F. Kashanchi, J. Brady, and R. Mahieux. 13 Mar. 2006. posting date. The tax protein from the primate T-cell lymphotropic virus type 3 is expressed in vivo and is functionally related to HTLV-1 Tax rather than HTLV-2 Tax. Oncogene [Online.] doi:10.1038/sj.onc.1209472.
9. Courgnaud, V., S. Van Dooren, F. Liegeois, X. Pourrut, B. Abela, S. Loul, E. Mpoudi-Ngole, A. Vandamme, E. Delaporte, and M. Peeters. 2004. Simian T-cell leukemia virus (STLV) infection in wild primate populations in Cameroon: evidence for dual STLV type 1 and type 3 infection in agile mangabeys (Cercocebus agilis). J. Virol. 78:4700-4709.
10. Digilio, L., A. Giri, N. Cho, J. Slattery, P. Markham, and G. Franchini. 1997. The simian T-lymphotropic/leukemia virus from Pan paniscus belongs to the type 2 family and infects Asian macaques. J. Virol. 71:3684-3692.
11. Feuer, G., and P. L. Green. 2005. Comparative biology of human T-cell lymphotropic virus type 1 (HTLV-1) and HTLV-2. Oncogene 24:5996-6004.
12. Gaudray, G., F. Gachon, J. Bashous, M. Biard-Piechaczyk, C. Devaux, and J. M. Mesnard. 2002. The complementary strand of the human T-cell leukemia virus type 1 RNA genome encodes a bZIP transcription factor that down-regulates viral transcription. J. Virol. 76:12813-12822.
13. Gessain, A., and R. Mahieux. 2000. Epidemiology, origin and genetic diversity of HTLV-1 retrovirus and STLV-1 simian affiliated retrovirus. Bull Soc. Pathol. Exot. 93:163-171.
14. Goubau, P., M. Van Brussel, A. M. Vandamme, H. F. Liu, and J. Desmyter. 1994. A primate T-lymphotropic virus, PTLV-L, different from human T-lymphotropic viruses types 1 and 11, in a wild-caught baboon (Papio hamadryas). Proc. Natl. Acad. Sci. USA 91:2848-2852.
15. Hahn, B. H., G. M. Shaw, K. M. De Cock, and P. M. Sharp. 2000. AIDS as a zoonosis: scientific and public health implications. Science 287:607-614.
16. Lemey, P., O. G. Pybus, S. Van Dooren, and A. M. Vandamme. 2005. A Bayesian statistical analysis of human T-cell lymphotropic virus evolutionary rates. Infect. Gen. Evol. 5:291-298.
17. Lole, K. S., R. C. Bollinger, R. S. Paranjape, D. Gadkari, S. S. Kulkarni, N. G. Novak, R. Ingersoll, H. W. Sheppard, and S. C. Ray. 1999. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73:152-160.
18. Mahieux, R., P. Horal, P. Mauclere, O. Mercereau-Puijalon, M. Guillotte, L. Meertens, E. Murphy, and A. Gessain. 2000. Human T-cell lymphotropic virus type 1 gag indeterminate Western blot patterns in Central Africa: relationship to Plasmodium falciparum infection. J. Clin. Microbiol. 38:4049-4057.
19. Mathews, D. H., J. Sabina, M. Zuker, and D. H. Turner. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288:911-940.
20. Meertens, L., and A. Gessain. 2003. Divergent simian T-cell lymphotropic virus type 3 (STLV-3) in wild-caught Papio hamadryas papio from Senegal: widespread distribution of STLV-3 in Africa. J. Virol. 77:782-789.
21. Meertens, L., R. Mahieux, P. Mauclere, J. Lewis, and A. Gessain. 2002. Complete sequence of a novel highly divergent simian T-cell lymphotropic virus from wild-caught red-capped mangabeys (Cercocebus torquatus) from Cameroon: a new primate T-lymphotropic virus type 3 subtype. J. Virol. 76:259-268.
22. Meertens, L., V. Shanmugam, A. Gessain, B. E. Beer, Z. Tooze, W. Heneine, and W. M. Switzer. 2003. A novel, divergent simian T-cell lymphotropic virus type 3 in a wild-caught red-capped mangabey (Cercocebus torquatus torquatus) from Nigeria. J. Gen. Virol. 84:2723-2727.
23. Posada, D., and K. A. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
24. Roussel, R., S. Fahre, C. Desbios, F. Bantignies, and P. Jalinot. 1998. The C-terminus of the HTLV-1 Tax oncoprotein mediates interaction with the PDZ domain of cellular proteins. Oncogene 6:643-654.
25. Salemi, M., J. Desmyter, and A. M. Vandamme. 2000. Tempo and mode of human and simian T-lymphotropic virus (HTLV/STLV) evolution revealed by analyses of full-genome sequences. Mol. Biol. Evol. 17:374-386.
26. Salemi, M., S. Van Dooren, and A. M. Vandamme. 1999. Origin and evolution of human and simian T-cell lymphotropic viruses. AIDS Rev. 1:131-139.
27. Sanderson, M. J. 2003. r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19:301-302.
28. Satou, Y., J.-I. Yasunaga, M. Yoshida, and M. Matsuoka. 2006. HTLV-1 basic leucine zipper factor gene mRNA supports proliferation of adult T cell leukemia cells. Proc. Natl. Acad. Sci. USA 103:720-725.
29. Sharp, P. M., E. Bailes, F. Gao, B. E. Beer, V. M. Hirsch, and B. H. Hahn. 2000. Origins and evolution of AIDS viruses: estimating the time-scale. Biochem. Soc. Trans. 28:275-282.
30. Shaulian, E., and M. Karin. 2002. AP-1 as a regulator of cell life and death. Nat. Cell Biol. 4:E131-E136.
31. Slattery, J. P., G. Franchini, and A. Gessain. 1999. Genomic evolution, patterns of global dissemination, and interspecies transmission of human and simian T-eell leukemia/lymphotropic viruses. Genome Res. 9:525-540.
32. Smith, M. R., and W. C. Greene. 1990. Identification of HTLV-1 tax transactivator mutants exhibiting novel transcriptional phenotypes. Genes Dev. 4:1875-1885.
33. Switzer, W. M., D. Pieniazek, P. Swanson, H. H. Samdal, V. Soriano, R. F. Khabbaz, J. E. Kaplan, R. B. Lal, and W. Heneine. 1995. Phylogenetic relationship and geographic distribution of multiple human T-cell lymphotropic virus type II subtypes. J. Virol. 69:621-632.
34. Switzer, W. M., M. Salemi, V. Shanmugam, F. Gao, M. E. Cong, C. Kuiken, V. Bhullar, B. E. Beer, D. Vallet, A. Gautier-Hion, Z. Tuoze, F. Villinger, E. C. Holmes, and W. Heneine. 2005. Ancient co-speciation of simian foamy viruses and primates. Nature 434:376-380.
35. Takemura, T., M. Yamashita, M. K. Shimada, S. Ohkura, T. Shotake, M. Ikeda, T. Miura, and M. Hayami. 2002. High prevalence of simian T-lymphotropic virus type L in wild Ethiopian baboons. J. Virol. 76:1642-1648.
36. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
37. Thomson, M. M., and R. Najera. 2005. Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: an update. AIDS Rev. 7:210-224.
38. Tsubata, C., M. Higuchi, M. Takahashi, M. Oie, Y. Tanaka, F. Geyjo, and M. Fujii. 2005. PDZ domain-binding motif of human T-cell leukemia virus type 1 Tax oncoprotein is essential for the interleukin 2 independent growth induction of a T-cell line. Retrovirology 2:46.
39. Van Brussel, M., P. Goubau, R. Rousseau, J. Desmyter, and A. M. Vandamme. 1997. Complete nucleotide sequence of the new simian T-lymphotropic virus, STLV-PH969 from a Hamadryas baboon, and unusual features of its long terminal repeat. J. Virol. 71:5464-5472.
40. Van Brussel, M., M. Salemi, H. F. Liu, J. Gabriels, P. Goubau, J. Desmyter, and A. M. Vandamme. 1998. The simian T-lymphotropic virus STLV-PP1664 from Pan paniscus is distinctly related to HTLV-2 but differs in genomic organization. Virology 243:366-379.
41. Van Dooren, S., M. Salemi, X. Pourrut, M. Peeters, E. Delaporte, M. Van Ranst, and A. M. Vandamme. 2001. Evidence for a second simian T-cell lymphotropic virus type 3 in Cercopithecus nictitans from Cameroon. J. Virol. 75:11939-11941.
42. Van Dooren, S., V. Shanmugam, V. Bhullar, B. Parekh, A. M. Vandamme, W. Heneine, and W. M. Switzer. 2004. Identification in gelada baboons (Theropithecus gelada) of a distinct simian T-cell lymphotropic virus type 3 with a broad range of Western blot reactivity. J. Gen. Virol. 85:507-519.
43. Wolfe, N. D., W. Heneine, J. K. Carr, A. D. Garcia, V. Shanmugam, U. Tamoufe, J. N. Torimiro, A. T. Prosser, M. Lehreton, E. Mpoudi-Ngole, F. E. McCutehan, D. L. Birx, T. M. Folks, D. S. Burke, and W. M. Switzer. 2005. Emergence of unique primate T-lymphotropic viruses among central African bushmeat hunters. Proc. Natl. Acad. Sci. USA 102:7994-7999.
44. Womble, D. D. 2000. GCG: the Wisconsin Package of sequence analysis programs. Methods Mol. Biol. 132:3-22.
45. Xie, L., B. Yaniamoto, A. Haoudi, O. J. Semmes, and P. L. Green. 2006. PDZ binding motif of HTLV-1 Tax promotes virus-mediated T-cell proliferation in vitro and persistence in vivo. Blood 107:1980-1988.
46. Yamashita, M., E. Ido, T. Miura, and M. Hayami. 1996. Molecular epidemiology of HTLV-1. J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 13(Suppl. 1):S124-S131.
47. Yoshida, M. 2001. Multiple viral strategies of HTLV-1 for dysregulation of cell growth control. Annu. Rev. Immunol. 19:475-496.