Functional identification of ygiP as a positive regulator of the ttdA-ttdB-ygjE operon

Microbiology

Volumn 152, Issue 7, 2006, Pages 2129-2135

  Oshima, Taku ^a   Biville, Francis ^b  

^a NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^b INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; GLYCEROL; HYDROLYASE; LYSINE; MEMBRANE PROTEIN; OXALOACETIC ACID; PROTEIN SUBUNIT; PROTEIN YGIP; PROTEIN YGJE; REGULATOR PROTEIN; TARTARIC ACID; UNCLASSIFIED DRUG;

ANAEROBIC GROWTH; ARTICLE; BACTERIAL CHROMOSOME; CARBON SOURCE; COMPUTER MODEL; CONTROLLED STUDY; ESCHERICHIA COLI; GENE FUNCTION; GENE LOCATION; GENETIC CODE; GENETIC SIMILARITY; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; OPERON; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FAMILY; PROTEIN INDUCTION; PROTEIN TRANSPORT; SEQUENCE ANALYSIS;

BACTERIAL PROTEINS; BASE SEQUENCE; ESCHERICHIA COLI; GENES, BACTERIAL; GENES, REGULATOR; GLYCEROL; MOLECULAR SEQUENCE DATA; OPERON; TARTRATES; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI;

EID: 33746085242     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.28753-0     Document Type: Article

References (28)

1. Bauer, C. E., Elsen, S. & Bird, T. H. (1999). Mechanisms for redox control of gene expression. Annu Rev Microbiol 53, 495-523.
2. Birnboim, H. C. & Doly, J. (1979). A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7, 1513-1523.
3. Blattner, F., Plunkett, G., Bloch, C. & 14 other authors (1997). The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1474.
4. Boyd, D., Weiss, D. S., Chen, J. C. & Beckwith, J. (2000). Towards single-copy gene expression systems making gene cloning physiologically relevant: lambda InCh, a simple Escherichia coli plasmid-chromosome shuttle system. J Bacteriol 182, 842-847.
5. Bullock, W. O., Fernandez, J. M. & Short, J. M. (1987). XLI-Blue: a high efficiency plasmid transforming recA Escherichia coli strain with β-galactosidase selection. Biotechniques 5, 376-378.
6. Datsenko, K. A. & Wanner, B. L. (2000). One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97, 6640-6645.
7. Dower, W. J., Miller, J. F. & Radgale, C. W. (1988). High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res 16, 6127-6145.
8. Fellay, R., Frey, J. & Krisch, H. (1987). Interposon mutagenesis of soil and water bacteria: a family of DNA fragments designed for in vitro insertional mutagenesis of Gram-negative bacteria. Gene 52, 147-154.
9. Kang, Y., Weber, K. D., Qiu, Y., Kiley, P. J. & Blattner, F. R. (2005). Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. J Bacteriol 187, 1135-1160.
10. Kershaw, C. J., Brown, N. L., Constantinidou, C., Patel, M. D. & Hobman, J. L. (2005). The expression profile of Escherichia coli K-12 in response to minimal, optimal and excess copper concentrations. Microbiology 151, 1187-1198.
11. Letoffe, S., Ghigo, J. M. & Wandersman, C. (1994). Secretion of the Serratia marcescens HasA protein by an ABC transporter. J Bacteriol 176, 5372-5377.
12. Liu, X. & De Wulf, P. (2004). Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling. J Biol Chem 279, 12588-12597.
13. Malpica, R., Franco, B., Rodriguez, C., Kwon, O. & Georgellis, D. (2004). Identification of a quinone-sensitive redox switch in the ArcB sensor kinase. Proc Nad Acad Sci U S A 101, 13318-13323.
14. Maniatis, T., Fritsch, E. F. & Sambrook, J. (1982). Molecular Cloning. a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
15. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3, 208-218.
16. Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
17. Pardee, A. B., Jacob, F. & Monod, J. (1959). The genetic control and cytoplasmic expression of inducibility in the synthesis of β-galactosidase of Escherichia coli. J Mol Biol 1, 165-178.
18. Pos, K. M., Dimroth, P. & Bott, M. (1998). The Escherichia coli citrate carrier CitT: a member of a novel eubacterial transporter family related to the 2-oxoglutarate/malate translocator from spinach chloroplasts. J Bacteriol 180, 4160-4165.
19. Raibaud, O., Gutierrez, C. & Schwartz, M. (1985). Essential and nonessential sequences in malPp, a positively controlled promoter in Escherichia coli. J Bacteriol 161, 1201-1208.
20. Reaney, S. K., Begg, C., Bungard, S. J. & Guest, J. R. (1993). Identification of the L-tartrate dehydratase genes (ttdA and ttdB) of Escherichia coli and evolutionary relationship with class I fumarase genes. J Gen Microbiol 139, 1523-1530.
21. Rossi, M. S., Paquelin, A., Ghigo, J. M. & Wandersman, C. (2003). Haemophore-mediated signal transduction across the bacterial cell envelope in Serratia marcescens: the inducer and the transported substrate are different molecules. Mol Microbiol 48, 1467-1480.
22. Russell, C. B., Thaler, D. S. & Dahlquist F. W. (1989). Chromosomal transformation of Escherichia coli recD strains with linearized plasmids. J Bacteriol 171, 2609-2613.
23. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
24. Schell, M. A. (1993). Molecular biology of the LysR family of transcriptional regulators. Annu Rev Microbiol 47, 597-626.
25. Swern, L. R., Kraft, B. J., Swern, D. L., Setterdahl, A. T., Masuda, S., Knaff, D. B., Zaleski, J. M. & Bauer, C. E. (2003). Signal transduction by the global regulator RegB is mediated by a redox-active cysteine. EMBO J 22, 4699-4708.
26. Turlin, E., Perrotte-piquemal, M., Danchin, A. & Biville, F. (2001). Regulation of the early steps of 3-phenylpropionate catabolism in Escherichia coli. J Mol Microbiol Biotechnol 3, 127-133.
27. Turlin, E., Sismeiro, O., Le Caer, J. P., Labas, V., Danchin, A. & Biville, F. (2005). 3-Phenylpropionate catabolism and the Escherichia coli oxidative stress response. Res Microbiol 156, 312-321.
28. Zheng, M., Aslund, F. & Storz, G. (1998). Activation of the OxyR transcription factor by reversible disulfide bond formation. Science 279, 1718-1721.