Collective bacterial dynamics revealed using a three-dimensional population-scale defocused particle tracking technique

Applied and Environmental Microbiology

Volumn 72, Issue 7, 2006, Pages 4987-4994

  Wu, Mingming ^a   Roberts, John W ^a   Kim, Sue ^a   Koch, Donald L ^a   DeLisa, Matthew P ^a  

^a Cornell University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOFILMS; CELLS; DERIVATIVES; DIFFUSION; ESCHERICHIA COLI; MONITORING;

BACTERIAL DYNAMICS; DEFOCUSED PARTICLE TRACKING (DPT); ESCHERICHIA COLI CELLS; ISOGENIC DERIVATIVES;

BACTERIA;

CELLS AND CELL COMPONENTS; LOCOMOTION; MICROBIAL ACTIVITY; SWIMMING;

ARTICLE; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIUM COLONY; BIOFILM; CELL DENSITY; CHEMOTAXIS; DEFOCUSED PARTICLE TRACKING; DIFFUSION COEFFICIENT; ESCHERICHIA COLI; HYDRODYNAMICS; IMAGING SYSTEM; NONHUMAN; PHENOTYPE; POPULATION DYNAMICS; THREE DIMENSIONAL IMAGING;

BACTERIAL PROTEINS; ESCHERICHIA COLI; IMAGING, THREE-DIMENSIONAL; MEMBRANE PROTEINS; MICROSCOPY, FLUORESCENCE; MOVEMENT; PARTICLE SIZE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 33746072604     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.00158-06     Document Type: Article

References (42)

1. Adler, J. 1973. A method for measuring chemotaxis and use of the method to determine optimum conditions for chemotaxis by Escherichia coll. J. Gen. Microbiol. 74:77-91.
2. Adler, J. 1966. Chemotaxis in bacteria. Science 153:708-716.
3. Banks, G., D. W. Schaefer, and S. S. Alpert. 1975. Light-scattering study of the temperature dependence of Escherichia coli motility. Biophys. J. 15:253-261.
4. Ben Jacob, E., I. Becker, Y. Shapira, and H. Levine. 2004. Bacterial linguistic communication and social intelligence. Trends Microbiol. 12:366-372.
5. Berg, H. C. 2004. E. coli in motion. Springer-Verlag, Berlin, Germany.
6. Berg, H. C. 1971. How to track bacteria. Rev. Sci. Instrum. 42:868-871.
7. Berg, H. C. 1993. Random walks in biology. Princeton University Press, Princeton, NJ.
8. Berg, H. C. 2003. The rotary motor of bacterial flagella. Annu. Rev. Biochem. 72:19-54.
9. Berg, H. C. 1978. The tracking microscope. Adv. Opt. Electron Microsc. 7:1-15.
10. Berg, H. C., and R. A. Anderson. 1973. Bacteria swim by rotating their flagellar filaments. Nature 245:380-382.
11. Berg, H. C., and D. A. Brown. 1972. Chemotaxis in Escherichia coli analysed by three-dimensional tracking. Nature 239:500-504.
12. Cormack, B. P., R. H. Valdivia, and S. Falkow. 1996. FACS-optimized mutants of the green fluorescent protein (GFP). Gene 173:33-38.
13. DeLisa, M. P., P. Samuelson, T. Palmer, and G. Georgiou. 2002. Genetic analysis of the twin arginine translocator secretion pathway in bacteria. J. Biol. Chem. 277:29825-29831.
14. Diao, J., L. Young, S. Kim, E. A. Fogarty, S. M. Heilman, P. Zhou, M. L. Shuler, M. Wu, and M. P. DeLisa. 2006. A three-channel microfluidic device for generating static linear gradients and its application to the quantitative analysis of bacterial chemotaxis. Lab. Chip 6:381-388.
15. Ford, R. M., and D. A. Lauffenburger. 1991. Measurement of bacterial random motility and chemotaxis coefficients: II. Application of single-cell-based mathematical model. Biotechnol. Bioeng. 37:661-672.
16. Ford, R. M., B. R. Phillips, J. A. Quinn, and D. A. Lauffenburger. 1991. Measurement of bacterial random motility and chemotaxis coefficients: I. Stopped-flow diffusion chamber assay. Biotechnol. Bioeng. 37:647-660.
17. Frymier, P. D., R. M. Ford, H. C. Berg, and P. T. Cummings. 1995. Three-dimensional tracking of motile bacteria near a solid planar surface. Proc. Natl. Acad. Sci. USA 92:6195-6199.
18. Gluch, M. F., D. Typke, and W. Baumeister. 1995. Motility and thermotactic responses of Thermotoga maritima. J. Bacteriol. 177:5473-5479.
19. Gregoire, G., H. Chate, and Y. Tu. 12 June 2001. Active and passive particles: modeling beads in a bacterial bath. Phys. Rev. E 64:011902. [Online.] doi: 10.1103/PhysRevE.64.011902.
20. Hernandez-Ortiz, J. P., C. G. Stoltz, and M. D. Graham. 2005. Transport and collective dynamics in suspensions of confined swimming particles. Phys. Rev. Lett. 95:204501.
21. Hirota, N. 1984. Chemotaxis in thermophilic bacterium PS-3. J. Biochem. (Tokyo) 96:645-650.
22. Kim, M. J., and K. S. Breuer. 2004. Enhanced diffusion due to motile bacteria. Phys. Fluids 16:78-81.
23. Levin, M. D., C. J. Morton-Firth, W. N. Abouhamad, R. B. Bourret, and D. Bray. 1998. Origins of individual swimming behavior in bacteria. Biophys. J. 74:175-181.
24. Lewus, P., and R. M. Ford. 2001. Quantification of random motility and chemotaxis bacterial transport coefficients using individual-cell and population-scale assays. Biotechnol. Bioeng. 75:292-304.
25. Lovely, P. S., and F. W. Dahlquist. 1975. Statistical measures of bacterial motility and chemotaxis. J. Theor. Biol. 50:477-496.
26. Macnab, R. M. 1996. Motility and chemotaxis, p. 732-759. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
27. Macnab, R. M., and D. E. Koshland, Jr. 1972. The gradient-sensing mechanism in bacterial chemotaxis. Proc. Natl. Acad. Sci. USA 69:2509-2512.
28. Maeda, K., Y. Imae, J. I. Shioi, and F. Oosawa. 1976. Effect of temperature on motility and chemotaxis of Escherichia coli. J. Bacteriol. 127:1039-1046.
29. Nossal, R., and S. H. Chen. 1973. Effects of chemoattractants on the motility of Escherichia coli. Nat. New Biol. 244:253-254.
30. Ouellette, N. T., H. Xu, and E. Bodenschatz. 2006. A quantitative study of three-dimensional Lagrangian particle tracking algorithms. Exp. Fluids 40:301-313.
31. Park, S., P. M. Wolanin, E. A. Yuzbashyan, H. Lin, N. C. Darnton, J. B. Stock, P. Silberzan, and R. Austin. 2003. Influence of topology on bacterial social interaction. Proc. Natl. Acad. Sci. USA 100:13910-13915.
32. Park, S., P. M. Wolanin, E. A. Yuzbashyan, P. Silberzan, J. B. Stock, and R. H. Austin. 11 July 2003. Motion to form a quorum. Science 301:188. [Online.] doi:10.1126/science.1079805.
33. Parkinson, J. S. 1978. Complementation analysis and deletion mapping of Escherichia coli mutants defective in chemotaxis. J. Bacteriol. 135:45-53.
34. Pathria, R. K. 1986. Statistical mechanics. Peigamon Press, Oxford, United Kingdom.
35. Pfeffer, W. 1888. Ueber chemotaktische bewegungen von bakterien, flagellaten und volvocineen. Unters. Botan. Inst. Tubingen 2:582-661.
36. Poole, P. S., D. R. Sinclair, and J. P. Armitage. 1988. Real time computer tracking of free-swimming and tethered rotating cells. Anal. Biochem. 175:52-58.
37. Sanatinia, H., E. C. Kofoid, T. B. Morrison, and J. S. Parkinson. 1995. The smaller of two overlapping cheA gene products is not essential for chemotaxis in Escherichia coli. J. Bacteriol. 177:2713-2720.
38. Schaefer, D. W., G. Banks, and S. S. Alpert. 1974. Intensity fluctuation spectroscopy of motile microorganisms. Nature 248:162-164.
39. Soni, G. V., B. M. Ali, Y. Hatwalne, and G. V. Shivashankar. 2003. Single particle tracking of correlated bacterial dynamics. Biophys. J. 84:2634-2637.
40. Turner, L., W. S. Ryu, and H. C. Berg. 2000. Real-time imaging of fluorescent flagellar filaments. J. Bacteriol. 182:2793-2801.
41. Wu, M., J. W. Roberts, and M. Buckley. 2005. Three-dimensional fluorescent particle tracking at micron-scale using a single camera. Exp. Fluids 38:461-465.
42. Wu, X. L., and A. Libchaber. 2000. Particle diffusion in a quasi-two-dimensional bacterial bath. Phys. Rev. Lett. 84:3017-3020.