Accumulation of sense-antisense transcripts of the rice catalase gene CatB under dark conditions requires signals from shoots

Gene

Volumn 377, Issue 1-2, 2006, Pages 186-194

  Iwamoto, Masao ^a   Higo, Kenichi ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Antisense RNA; Auxin; dsRNA; Oryza sativa; Plant; Root

Indexed keywords

CATALASE; COMPLEMENTARY RNA; MESSENGER RNA; PROTEIN CATB; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARTICLE; DOT HYBRIDIZATION; GENE REPRESSION; GENETIC TRANSCRIPTION; INTRON; LIGHT DARK CYCLE; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENETICS; PLANT GROWTH; PLANT ROOT; PRIORITY JOURNAL; PROTEIN SYNTHESIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RICE; SEEDLING; SIGNAL TRANSDUCTION;

BASE SEQUENCE; CATALASE; DARKNESS; GENES, PLANT; ORYZA SATIVA; PLANT ROOTS; PLANT SHOOTS; RNA, ANTISENSE; RNA, MESSENGER; RNA, PLANT; SIGNAL TRANSDUCTION; TRANSCRIPTION, GENETIC;

ORYZA SATIVA;

EID: 33745967830     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2006.04.010     Document Type: Article

References (29)

1. Ansaldi R., Chaboud A., and Dumas C. Multiple S gene family members including natural antisense transcripts are differentially expressed during development of maize flowers. J. Biol. Chem. 275 (2000) 24146-24155
2. Carthew R.W. Gene silencing by double-stranded RNA. Curr. Opin. Cell Biol. 13 (2001) 244-248
3. Chen Z., Iyer S., Caplan A., Klessig D.F., and Fan B. Differential accumulation of salicylic acid and salicylic acid-sensitive catalase in different rice tissues. Plant Physiol. 114 (1997) 193-201
4. Chhun F., Taketa S., Tsurumi S., and Ichii M. Interaction between two auxin-resistant mutants and their effects on lateral root formation in rice (Oryza sativa L.). J. Exp. Bot. 54 (2003) 2701-2708
5. Fagard M., Boutet S., Morel J.-B., Bellini C., and Vaucheret H. AGO1, QDE-2, and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi, and RNA interference in animals. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 11650-11654
6. Feinberg A.P., and Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132 (1983) 6-13
7. Fong N., Bird G., Vigneron M., and Bentley D.L. A 10 residue motif at the C-terminus of the RNA pol II CTD is required for transcription, splicing and 3′ end processing. EMBO J. 22 (2003) 4274-4282
8. Gray T.A., Azama K., Whitmore K., Min A., Abe S., and Nicholls R.D. Phylogenetic conservation of the makorin-2 gene, encoding a multiple zinc-finger protein, antisense to the RAF1 proto-oncogene. Genomics 77 (2001) 119-126
9. Hamilton A.J., and Baulcombe D.C. A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286 (1999) 950-952
10. Horiuchi H., Udagawa T., Koga R., Moriyama H., and Fukuhara T. RNA-dependent RNA polymerase activity associated with endogenous double-stranded RNA in rice. Plant Cell Physiol. 42 (2001) 197-203
11. Iwamoto M., Maekawa M., Saito A., Higo H., and Higo K. Evolutionary relationship of plant catalase genes inferred from exon-intron structures: isozyme divergence after the separation of monocots and dicots. Theor. Appl. Genet. 97 (1998) 9-19
12. Iwamoto M., Higo H., and Higo K. Differential diurnal expression of rice catalase genes: the 5′-flanking region of CatA is not sufficient for circadian control. Plant Sci. 151 (2000) 39-46
13. Katayama S., et al. Antisense transcription in the mammalian transcriptome. Science 309 (2005) 1564-1566
14. Kiyosawa H., Mise N., Iwase S., Hayashizaki Y., and Abe K. Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized. Genome Res. 15 (2005) 463-474
15. Nishimura Y., Kikis E.A., Zimmer S.L., Komine Y., and Stern D.B. Antisense transcript and RNA processing alterations suppress instability of polyadenylated mRNA in Chlamydomonas chloroplasts. Plant Cell 16 (2004) 2849-2869
16. Ohba H., et al. Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins. Mol. Gen. Genet. 263 (2000) 359-366
17. Osato N., et al. Antisense transcripts with rice full-length cDNAs. Genome Biol. 5 (2003) (Article R5.1-R5.10)
18. Rabbani M.A., et al. Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses. Plant Physiol. 133 (2003) 1755-1767
19. Ross E.J.H., Stone J.M., Elowsky C.G., Arredondo-Peter R., Klucas R.V., and Sarath G. Activation of the Oryza sativa non-symbiotic haemoglobin-2 promoter by the cytokinin-regulated transcription factor, ARR1. J. Exp. Bot. 55 (2004) 1721-1731
20. Scarpella E., Rueb S., Boot K.J.M., Hoge J.H.C., and Meijer A.H. A role for the rice homeobox gene Oshox1 in provascular cell fate commitment. Development 127 (2000) 3655-3669
21. Shendure J., and Church G.M. Computational discovery of sense-antisense transcription in the human and mouse genomes. Genome Biol. 3 (2002) (research 0044.1-0044.14)
22. Shinozaki K., and Yamaguchi-Shinozaki K. Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Curr. Opin. Plant Biol. 3 (2000) 217-223
23. Sisodia S.S., Sollner-Webb B., and Cleveland D.W. Specificity of RNA maturation pathways: RNAs transcribed by RNA polymerase III are not substrates for splicing or polyadenylation. Mol. Cell. Biol. 7 (1987) 3602-3612
24. Takaiwa F., Oono K., and Sugiura M. The complete nucleotide sequence of a rice 17S rRNA gene. Nucleic Acids Res. 12 (1984) 5441-5448
25. Thakur J.K., Tyagi A.K., and Khurana J.P. OsIAA1, an Aux/IAA cDNA from rice, and changes in its expression as influenced by auxin and light. DNA Res. 8 (2001) 193-203
26. Vanhée-Brossollet C., and Vaquero C. Do natural antisense transcripts make sense in eukaryotes?. Gene 211 (1998) 1-9
27. Waller F., Furuya M., and Nick P. OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin response gene. Plant Mol. Biol. 50 (2002) 415-425
28. Yamada K., et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302 (2003) 842-846
29. Yelin R., et al. Widespread occurrence of antisense transcription in the human genome. Nat. Biotechnol. 21 (2003) 379-386