Characterization of Armillaria spp. from peach orchards in the southeastern United States using fatty acid methyl ester profiling

Mycological Research

Volumn 110, Issue 4, 2006, Pages 414-422

  Cox, K D ^a,b   Scherm, H ^a   Riley, M B ^b  

^a UNIVERSITY OF GEORGIA   (United States)

^b CLEMSON UNIVERSITY   (United States)

Author keywords

Honey fungus; Plant pathology; Prunus persica; Tree disease

Indexed keywords

FATTY ACID;

FATTY ACID; MUSHROOM; ORCHARD;

AGARICALES; ARTICLE; CLASSIFICATION; DISCRIMINANT ANALYSIS; GAS CHROMATOGRAPHY; METABOLISM; MICROBIOLOGY; PLANT DISEASE; PRUNUS;

AGARICALES; CHROMATOGRAPHY, GAS; DISCRIMINANT ANALYSIS; FATTY ACIDS; PLANT DISEASES; PRUNUS;

NORTH AMERICA; UNITED STATES;

ARMILLARIA; ARMILLARIA GALLICA; ARMILLARIA MELLEA; ARMILLARIA TABESCENS; BASIDIOMYCOTA; GANODERMA LUCIDUM; MYCELIUM (GENUS); PRUNUS PERSICA; SCHIZOPHYLLUM COMMUNE; STEREUM HIRSUTUM; TRAMETES VERSICOLOR;

EID: 33745948731     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2005.12.004     Document Type: Article

References (50)

1. Adaskaveg J.E., Miller R.W., and Gilbertson R.L. Wood decay, lignicolous fungi, and decline of peach trees in South Carolina. Plant Disease 77 (1993) 707-711
2. Augustyn O.P.H., and Kock J.F.L. Differentiation between yeast species and strains within a species by cellular fatty acid analysis. 1. Application of an adapted technique to differentiate between strains of Saccharomyces cerevisiae. Journal of Microbiological Methods 10 (1989) 9-23
3. Augustyn O.P.H., Kock J.F.L., and Ferreira D. Differentiation between yeast species and strains within a species by cellular fatty acid analysis. 5. A feasible technique?. Systematic and Applied Microbiology 13 (1990) 44-45
4. Baird R.E., Gitaitis R.D., Carling D.E., Baird S.M., Alt P.J., and Mullinix B.G. Determination of whole-cell fatty acid profiles for the characterization and differentiation of isolates of Rhizoctonia solani AG-4 and AG-7. Plant Disease 84 (2000) 785-788
5. Bentivenga S.P., and Morton J.B. Stability and heritability of fatty acid methyl ester profiles of glomalean endomycorrhizal fungi. Mycological Research 98 (1994) 1419-1426
6. Bentivenga S.P., and Morton J.B. Congruence of fatty acid methyl ester profiles and morphological characters of arbuscular mycorrhizal fungi in Gigasporaceae. Proceedings of the National Academy of Sciences 93 (1996) 5659-5662
7. Brondz I., Høiland K., and Ekeberg D. Multivariate analysis of fatty acids in spores of higher basidiomycetes: a new method for chemotaxonomical classification of fungi. Journal of Chromatography 800 (2004) 303-307
8. Childs L., and Zeller S.M. Observations on Armillaria root rot of orchard trees. Phytopathology 19 (1929) 869-873
9. Chillali M., Idder-Ighili H., Guillaumin J.J., Mohammed C., Escarmant B.L., and Botton B. Variation in the ITS and IGS regions of ribosomal DNA among the biological species of European Armillaria. Mycological Research 102 (1998) 533-540
10. Coetzee M.P.A., Wingfield B.D., Kirisits T., Chhertri D.B., Bloomer P., and Wingfield M.J. Indentification of Armillaria isolates from Bhutan based on DNA sequence comparisions. Plant Pathology 54 (2005) 36-45
11. Cox K.D., Scherm H., and Beckman T.G. Armillaria root and crown rot. In: Horton D., and Johnson D. (Eds). Southeastern Peach Growers Handbook (2005), Cooperative Extension Service, University of Georgia, Athens 162-166
12. Dimou D.M., Georgala A., Komaitis M., and Aggelis G. Mycelial fatty acid composition of Pleurotus spp. and its application in the intrageneric differentiation. Mycological Research 106 (2002) 925-929
13. Doepel R.F. Armillaria root rot of fruit trees. Journal of the Department of Agriculture of Western Australia 3 (1962) 39-42
14. Gardner M.W., and Raabe R.D. Early references to Armillaria root rot in California. Plant Disease Reporter 5 (1963) 413-415
15. Graham J.H., Hodge N.C., and Morton J.B. Fatty acid methyl ester profiles for the characterization of glomalean fungi and their endomycorrhizae. Applied and Environmental Microbiology 61 (1995) 58-64
16. Guillaumin J.J., Anderson J.B., Legrand P., Ghahari S., and Berthelay S. A comparison of different methods for the identification of genets of Armillaria spp. New Phytologist 133 (1996) 333-343
17. Guillaumin J.J., Anderson J.B., and Korhonen K. Life cycle, interfertility, and biological species. In: Shaw III G.C., and Kile G.A. (Eds). Armillaria Root Disease (1991), USDA Forest Service, Washington, DC 10-20 [USDA Forest Service Agriculture Handbook No. 691]
18. Hanna J.W., Klopfenstein N.B., Kim M.-S., McDonald G.I., and Moore J.A. Intraspecific and intragenomic variation of Armillaria ostoyae within the western United States. Phytopathology 93 (2003) S33
19. Harrington T.C., and Wingfield B.D. A PCR-based identification method for species of Armillaria. Mycologia 87 (1995) 280-288
20. Hood I.A., Redfern D.B., and Kile G.A. Armillaria in planted hosts. In: Shaw III G.C., and Kile G.A. (Eds). Armillaria Root Disease (1991), USDA Forest Service, Washington, DC 122-149 [USDA Forest Service Agriculture Handbook No. 691]
21. Ka J.O., Holben W.E., and Tiedje J.M. Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2, 4-d)-degrading bacteria isolated from 2, 4-d-treated field soils. Applied and Environmental Microbiology 60 (1994) 1106-1115
22. Kelly KL, 2004. Molecular characterization of southeastern Armillaria isolates. MSc thesis, Department of Horticulture, University of Georgia, Athens.
23. Korhonen K. Interfertility and clonal size in the Armillaria mellea complex. Karstenia 18 (1978) 31-41
24. Larkin R.P., and Groves C.L. Identification and characterization of isolates of Phytophthora infestans using fatty acid methyl ester profiles. Plant Disease 87 (2003) 1233-1243
25. Matsumoto M., Furuya N., and Matsuyama N. Characterization of Rhizoctonia spp., causal agents of sheath diseases of rice plant, by total cellular fatty acid analysis. Annals of the Phytopathological Society of Japan 63 (1997) 149-154
26. Miller RW, 1994. Estimated peach tree losses from 1980 to 1992 in South Carolina, causes and economic impact. In: Proceedings of the 6th Stone Fruit Decline Workshop, 26-28 Oct. 1992, Fort Valley, GA, pp. 121-127.
27. Moss C.W. Gas-liquid chromatography as an analytical tool in microbiology. Journal of Chromatography 203 (1981) 337-347
28. Müller M.M., Kantola R., Korhonen K., and Uotila J. Combined fatty acid and sterol profiles of Heterobasidion annosum intersterility groups S, P and F. Mycological Research 99 (1995) 1025-1033
29. Nichols P., Stulp B.K., Jones J.G., and White D.C. Comparison of fatty acid content and DNA homology of the filamentous gliding bacteria Vitreoscilla, Flexibacter, and Filibacter. Archives of Microbiology 146 (1986) 1-6
30. Perez-Sierra A., Whitehead D.S., and Whitehead M.P. Investigation of a PCR-based method for the routine identification of British Armillaria species. Mycolocial Research 103 (1999) 1631-1636
31. Priyatmojo A., Yamauchi R., Carling D.E., Kageyama K., and Hyakumachi M. Differentiation of three varieties of Rhizoctonia circinata; var. circinata, var. oryzae and var. zeae on the basis of cellular fatty acid composition. Journal of Phytopathology 150 (2002) 1-5
32. Priyatmojo A., Yamauchi R., Kageyama K., and Hyakumachi M. Whole-cell fatty acid composition to characterize and differentiate isolates of Rhizoctonia species associated with turfgrass diseases in Japan. Journal of General Plant Patholology 68 (2002) 1-7
33. Raabe R.D. Host list of the root rot fungus Armillaria mellea. Hilgardia 33 (1962) 25-88
34. Raabe R.D. Variation in pathogenicity and virulence in Armillaria mellea. Phytopathology 57 (1967) 73-75
35. Rhoads A.S. A comparative study of two closely related root-rot fungi, Clitocybe tabescens and Armillaria mellea. Mycologia 37 (1945) 741-766
36. Rhoads A.S. Clitocybe root rot found widespread and destructive in Georgia and South Carolina peach orchards. Plant Disease Reporter 38 (1954) 42-46
37. Riley M.B., Collins I.J., Richardson Y.T., and Stutzenburger F.J. Extraction of fungal fatty acids for gas chromatography analysis. Mycologia 92 (2000) 301-304
38. Rishbeth J. Effects of soil temperature and atmosphere on the growth of Armillaria rhizomoprhs. Transactions of the British Mycological Society 70 (1978) 213-220
39. Ritchie N.J., Schutter M.E., Dick R.P., and Myrold D.D. Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil. Applied and Environmental Microbiology 66 (2000) 1668-1675
40. Savage E.F., Weinberger J.H., Lutrell E.S., and Rhoads A.S. Clitocybe root rot a disease of economic importance in Georgia peach orchards. Plant Disease Reporter 37 (1953) 269-270
41. Schnabel G., Ash J.S., and Bryson P.K. Identification and characterization of Armillaria tabescens from the southeastern United States. Mycological Research 109 (2005) 1208-1222
42. Schulze S., Bahnweg G., Moller E.M., and Sandermann Jr. H. Identification of the genus Armillaria by specific amplification of an rDNA-ITS fragment and evaluation of genetic variation within A. ostoyae by rDNA-RFLP and RAPD analysis. European Journal of Forest Pathology 27 (1997) 225-239
43. Shaw III C.G., and Kile G.A. Armillaria Root Disease. [USDA Forest Service Agriculture Handbook No. 691] (1991), USDA Forest Service, Washington, DC
44. Sönnichsen M., and Müller B.W. A rapid quantitative method for total fatty acid analysis of fungi and other biological samples. Lipids 34 (1999) 1347-1349
45. Stahl P.D., and Klug M.J. Characterization and differentiation of filamentous fungi based on fatty acid composition. Applied and Environmental Microbiology 62 (1996) 4136-4146
46. Steiner P.W. White root rot: a threat to the Missouri peach industry. Transactions of the Illinois State Horticultural Society 110 (1976) 24-28
47. Stevens Johnk J., and Jones R.K. Determination of whole-cell fatty acids in isolates of Rhizoctonia solani AG-1 IA. Phytopathology 82 (1992) 68-72
48. Veys A., Callewaert W., Waelkins E., and Van Den Abeele K. Application of gas-liquid chromatography to the routine identification of nonfermenting Gram-negative bacteria in clinical specimens. Journal of Clinical Microbiology 27 (1989) 1538-1542
49. White E.E., Dubetz C.P., Cruickshank M.G., and Morrison D.J. DNA diagnostic for Armillaria species in British Columbia: within and between species variation in the IGS-1 and IGS-2 regions. Mycologia 90 (1998) 125-131
50. Williams-Woodward J.L. 2000 Georgia Plant Disease Loss Estimates. [Path 01-001.] (2001), Cooperative Extension Service, University of Georgia, Athens