The colonization of Europe by the freshwater crustacean Asellus aquaticus (Crustacea: Isopoda) proceeded from ancient refugia and was directed by habitat connectivity

Molecular Ecology

Volumn 14, Issue 14, 2005, Pages 4355-4369

  Verovnik, R ^a   Sket, B ^a   Trontelj, P ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

Colonization; Concerted evolution; Genetic diversity; Phylogeography; Refugium

Indexed keywords

ASELLUS AQUATICUS; CRUSTACEA; ISOPODA;

FRESH WATER; MITOCHONDRIAL DNA; PRIMER DNA; RNA 28S;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; COMPARATIVE STUDY; DEMOGRAPHY; DNA SEQUENCE; ENVIRONMENT; EUROPE; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; ISOPODA; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; POPULATION DYNAMICS; STATISTICAL MODEL;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; DEMOGRAPHY; DNA PRIMERS; DNA, MITOCHONDRIAL; ENVIRONMENT; EUROPE; EVOLUTION, MOLECULAR; FRESH WATER; GEOGRAPHY; ISOPODA; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POPULATION DYNAMICS; RNA, RIBOSOMAL, 28S; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

EID: 33745874860     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02745.x     Document Type: Article

References (68)

1. Arkhipov SA, Ehlers J, Johnson RG, Wright HE (1995) Drainage towards the Mediterranean during the middle and late Pleistocene. Boreas, 24, 196-206.
2. Avise JC (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
3. Banarescu P (1991) Zoogeography of Fresh Waters, (Vol. 2): Distribution and Dispersal of Freshwater Animals in North America and Eurasia. ALU Verlag, Wiesbaden.
4. Bandelt HJ, Forster P, Rohl A (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37-48.
5. Bernatchez L, Wilson CC (1998) Comparative phylogeography of Nearctic and Palearctic fishes. Molecular Ecology, 7, 431-452.
6. Coen E, Strachan T, Dover G (1982) Dynamics of concerted evolution of ribosomal DNA and histone gene families in the melanogaster species subgroup of Drosophila. Journal of Molecular Biology, 158, 17-35.
7. Crochet PA, Chaline O, Surget-Groba Y, Debain C, Cheylan M (2004) Speciation in mountains: phylogeography and phylogeny of the rock lizards genus Iberolacerta (Reptilia: Lacertidae). Molecular Phylogenetics and Evolution, 30, 860-866.
8. Culver DC (1982) Cave Life. Harvard University Press, Cambridge and London.
9. De Gelas K, De Meester L (2005) Phylogeography of Daphnia magna in Europe. Molecular Ecology, 14, 753-764.
10. Drensky P (1930) Zur Kenntnis der Süsswasserfischfauna Bulgariens. Zoologisher Jahrbücher, Abteilung für Systematik, Ökologie und Geographie der Tiere, 59, 663-680.
11. Drummond AJ, Rambaut A (2003) BEAST, Version 1.0. Available from http://evolve.zoo.ox.ac.uk/beast/.
12. Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W (2002) Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics, 161, 1307-1320.
13. Durand JD, Persat H, Bouvet Y (1999) Phylogeography and postglacial dispersion of the chub (Leuciscus cephalus) in Europe. Molecular Ecology, 8, 989-997.
14. Economidis PS, Banarescu P (1991) The distribution and origins of freshwater fishes in the Balkan Peninsula, especially in Greece. Internationale Revue der Gesamten Hydrobiologie, 76, 257-284.
15. Elder JF Jr, Turner BJ (1995) Concerted evolution of repetitive DNA sequences in eukaryotes. Quarterly Review of Biology, 70, 297-320.
16. Englbrecht CC, Freyhof J, Nolte A, Rassmann K, Schliewen U, Tautz D (2000) Phylogeography of the bullhead Cottus gobio (Pisces: Teleostei: Cottidae) suggests a pre-Pleistocene origin of the major central European populations. Molecular Ecology, 9, 709-722.
17. Folmer OM, Black M, Hoeh R, Lutz R, Vrijehoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 5, 304-313.
18. Freeland JR, Chiara Romualdi C, Okamura B (2000) Gene flow and genetic diversity: a comparison of freshwater bryozoan populations in Europe and North America. Heredity, 85, 498-508.
19. Fromhage L, Vences M, Veith M (2004) Testing alternative vicariance scenarios in western Mediterranean discoglossid frogs. Molecular Phylogenetics and Evolution, 31, 308-322.
20. Gruner HE (1965) Krebstiere oder Crustacea. Isopoda. In: Die Tierwelt Deutschlands und der angrenzenden Meeresteile (ed. Dahl F), pp. 1-148. Gustav Fischer Press, Jena, Germany.
21. Henry JP, Magniez G (1983) Nouvelles données sur les Asellidae épigés d'Extreme - Orient (Crustacea, Isopoda, Asellota). Contributions to Zoology, 65, 101-122.
22. Hewitt GM (1999) Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society, 68, 87-112.
23. Hsü KJ, Montadert L, Bernoulli D et al. (1997) History of Mediterranean salinity crisis. Nature, 267, 399-403.
24. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17, 754-755.
25. Hutchinson DW (2003) Testing the central/peripheral model: analyses of microsatellite variability in the eastern collared lizard (Crotaphytus collaris collaris). American Midland Naturalist, 149, 148-162.
26. Ketmaier V, Argano R, Caccone A (2003) Phylogeography and molecular rates of subterranean aquatic stenasellid isopods with a peri-Thyrrenian distribution. Molecular Ecology, 12, 547-555.
27. Kotlík P, Berrebi P (2002) Genetic subdivision and biogeography of the Danubian rheophilic barb Barbus petenyi inferred from phylogenetic analysis of mitochondrial DNA variation. Molecular Phylogenetics and Evolution, 24, 10-18.
28. Kuhner MK, Yamato J, Felsenstein J (1998) Maximum likelihood estimation of recombination rates from population data. Genetics, 156, 1393-1401.
29. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150-163.
30. Ladiges W, Vogt D (1965) Die Süsswasser-Fische Europas. Paul Parey Press, Hamburg.
31. Lockwood AMP (1959) The osmotic and ionic regulation of Asellus aquaticus (L.). Journal of Experimental Biology, 36, 546-555.
32. Machino Y, Füreder L, Laurent PJ, Petutchnig J (2004) Introduction of the white-clawed crayfish Austropotamobius pallipes in Europe. Berichte des Naturwissenschaftlich-medizinischen Vereins in Innsbruck, 91, 187-212.
33. Mihevc A (2001) The Speleogenesis of Divaèa Karst. ZRC Press, Ljubljana (in Slovene).
34. Nei M, Kumar S (2000) Molecular Evolution and Phylogenetics. Oxford University Press, New York.
35. Nesbø CL, Fossheim T, Vøllestad LA, Jakobsen KS (1999) Genetic divergence and phylogeographic relationships among European perch (Perca fluviatilis) populations reflect glacial refugia and postglacial colonization. Molecular Ecology, 8, 1387-1404.
36. Nixon KC (1999) WINCLADA (BETA), Version 0.9.9. Published by the author, Ithaca, New York.
37. Ohta T, Dover GA (1983) Population genetics of multigene families that are dispersed into two or more chromosomes. Proceedings of the National Academy of Sciences, USA, 80, 4079-4083.
38. Perdices A, Doadrio I (2001) The molecular systematics and biogeography of the European cobitids based on mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 19, 468-478.
39. Pfenninger M, Staubach S, Albrecht C, Streit B, Schwenk K (2003) Ecological and morphological differentiation among cryptic evolutionary lineages in freshwater limpets of the nominal form-group Ancylus fluviatilis (O.F. Muller, 1774). Molecular Ecology, 12, 2731-2745.
40. Plenièar M, Nosan A (1958) Paleogeography of the Pannonian borderland in Slovenia. Geologija, 4, 94-110. (in Slovenian)
41. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
42. Posada D, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution, 16, 37-45.
43. Prevorčnik S, Blejec A, Sket B (2004) Racial differentiation in Asellus aquaticus (L.) (Crustacea: lsopoda: Asellidae). Archiv für Hydrobiologie, 160, 193-214.
44. Robinson-Rechavi M, Huchon D (2000) RRTREE: relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics, 16, 296-297.
45. Rögl F (1998) Palaeogeographic considerations for Mediterranea and Paratethys seaways (Oligocene to Miocene). Annalen des Naturhistorischen Museums in Wien, 99, 279-310.
46. Rouch R, Danielopol DL (1987) L'origine de la faune aquatique souterraine, entre le paradigme du refuge et le modele de la colonisation active. Stygologia, 3, 345-372.
47. Rozas J, Sánchez-DelBarrio JC, Messegyer X, Rozas R (2003) DNASP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
48. Salzburger W, Brandstatter A, Gilles A et al. (2003) Phylogeography of the vairone (Leuciscus souffia, Risso 1826) in central Europe. Molecular Ecology, 12, 2371-2386.
49. Shimodaira H (2002) An approximately unbiased test of phylogenetic tree selection. Systematic Biology, 51, 492-508.
50. Shimodaira H, Hasegawa M (2001) CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics, 17, 1246-1247.
51. Sket B (1969) Ueber einige mit der Evolution der Hoehlentiere verbundene Probleme. Actes du IVe Congres International de Speleologie en Yougoslavie 1965 (Ljubljana) (4-5), 225-230.
52. Sket B (1994) Distribution of Asellus aquaticus (Crustacea: Isopoda: Asellidae) and its hypogean populations at different geographic scales, with a note on Proasellus istrianus. Hydrobiologia, 287, 39-47.
53. Sket B (1999) The nature of biodiversity in hypogean waters and how it is endangered. Biodiversity and Conservation, 8, 1319-1338.
54. Šlechtova V, Bohlen J, Freyhof J, Persat H, Delmastro GB (2004) The Alps as barrier to dispersal in cold-adapted freshwater fishes? Phylogeographic history and taxonomic status of the bullhead in the Adriatic freshwater drainage. Molecular Phylogenetics and Evolution, 33, 225-239.
55. Stewart JR, Lister AM (2001) Cryptic northern refugia and the origins of the modern biota. Trends in Ecology & Evolution, 16, 608-613.
56. Swofford DL (2001) PAUP*, Version 4.0b10 [computer software and manual]. Sinauer Associates, Sunderland, Massachusetts.
57. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF (1998) Comparative phylogeography and postglacial colonisation routes in Europe. Molecular Ecology, 7, 27-36.
58. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512-526.
59. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
60. Trenton W, Garner J, Pearman PB, Angelone S (2004) Genetic diversity across a vertebrate species' range: a test of the central-peripheral hypothesis. Molecular Ecology, 13, 1047-1053.
61. Trontelj P, Utevsky SY (2005) Celebrity with a neglected taxonomy: molecular systematics of the medicinal leech (genus Hirudo). Molecular Phylogenetics and Evolution, 34, 616-624.
62. Trontelj P, Machino Y, Sket B (2005) Phylogenetic and phylogeographic relationships in the crayfish genus Austropotamobius inferred from mitochondrial COI gene sequences. Molecular Phylogenetics and Evolution, 34, 212-226.
63. Tsigenopoulos CS, Kotlik P, Berrebi P (2002) Biogeography and pattern of gene flow among Barbus species (Teleostei: Cyprinidae) inhabiting the Italian Peninsula and neighbouring Adriatic drainages as revealed by allozyme and mitochondrial sequence data. Biological Journal of the Linnean Society, 75, 83-99.
64. Veith M, Kosuch J, Vences M (2003) Climatic oscillations triggered post-Messinian speciation of western Palearctic brown frogs (Amphibia, Ranidae). Molecular Phylogenetics and Evolution, 26, 310-327.
65. Verovnik R, Sket B, Prevorčnik S, Trontelj P (2003) Random amplified polymorphic DNA diversity among surface and subterranean populations of Asellus aquaticus (Crustacea: Isopoda). Genetica, 119, 155-165.
66. Verovnik R, Sket B, Trontelj P (2004) Phylogeography of subterranean and surface populations of water lice Asellus aquaticus (Crustacea: Isopoda). Molecular Ecology, 13, 1519-1532.
67. Whitehurst IT (1991) The Gammarus : Asellus ratio as an index of organic pollution. Water Research, 25, 333-339.
68. Wilson RCL, Drury SA, Chapman JL (1999) The Great Ice Age: Climate Change and Life. The Open University, London and New York.