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Volumn 2, Issue 2, 2006, Pages 193-217

Multiple testing in large-scale contingency tables: Inferring patterns of pair-wise amino acid association in β-sheets

Author keywords

Contingency table; False discovery rate; Multiple testing; strands

Indexed keywords

AMINO ACID; PROTEIN;

EID: 33745861645     PISSN: 17445458     EISSN: 17445493     Source Type: Journal    
DOI: 10.1504/IJBRA.2006.009768     Document Type: Article
Times cited : (11)

References (27)
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. and Hochberg, Y. (1995) 'Controlling the false discovery rate: a practical and powerful approach to multiple testing', J. Roy. Statist. Soc. B, Vol. 57, pp.289-300.
    • (1995) J. Roy. Statist. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery ratein multiple testing under dependency
    • Benjamini, Y. and Yekutieli, D. (2001) 'The control of the false discovery ratein multiple testing under dependency', Annals of Statistics, Vol. 29, pp.1165-1188.
    • (2001) Annals of Statistics , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 5
    • 84946647285 scopus 로고
    • Some difficulties of interpretation encountered in the application of the chi-square test
    • Berkson, J. (1938) 'Some difficulties of interpretation encountered in the application of the chi-square test', J. Am. Statist. Assoc., Vol. 33, pp.526-536.
    • (1938) J. Am. Statist. Assoc. , vol.33 , pp. 526-536
    • Berkson, J.1
  • 7
    • 0043203327 scopus 로고    scopus 로고
    • Multiple hypothesis testing in microarray experiments
    • Dudoit, S., Shaffer, J.P. and Boldrick, J.C. (2003) 'Multiple hypothesis testing in microarray experiments', Statistical Science, Vol. 18, pp.71-103.
    • (2003) Statistical Science , vol.18 , pp. 71-103
    • Dudoit, S.1    Shaffer, J.P.2    Boldrick, J.C.3
  • 8
    • 2142732441 scopus 로고    scopus 로고
    • Large-scale simultaneous hypothesis testing: The choice of a null hypothesis
    • Efron, B. (2004) 'Large-scale simultaneous hypothesis testing: the choice of a null hypothesis', J. Am. Statist. Assoc., Vol. 99, pp.99-104.
    • (2004) J. Am. Statist. Assoc. , vol.99 , pp. 99-104
    • Efron, B.1
  • 11
    • 0029996162 scopus 로고    scopus 로고
    • Incorporation of non-local interactions in protein secondary structure prediction
    • Frishman, D. and Argos, P. (1996) 'Incorporation of non-local interactions in protein secondary structure prediction', Protein Engineering, Vol. 9, pp.133-142.
    • (1996) Protein Engineering , vol.9 , pp. 133-142
    • Frishman, D.1    Argos, P.2
  • 12
    • 0002547839 scopus 로고
    • The analysis of residuals in cross-classified tables
    • Haberman, S.J. (1973) 'The analysis of residuals in cross-classified tables', Biometrics, Vol. 29, pp.205-220.
    • (1973) Biometrics , vol.29 , pp. 205-220
    • Haberman, S.J.1
  • 13
    • 0031735020 scopus 로고    scopus 로고
    • Determinants of strand register in antiparallel β-sheets of proteins
    • Hutchinson, E.G., Sessions, R.B., Thornton, J.M. and Woolfson, D.N. (1998) 'Determinants of strand register in antiparallel β-sheets of proteins', Protein Science, Vol. 7, pp.2287-2300.
    • (1998) Protein Science , vol.7 , pp. 2287-2300
    • Hutchinson, E.G.1    Sessions, R.B.2    Thornton, J.M.3    Woolfson, D.N.4
  • 14
    • 0020997912 scopus 로고
    • Dictionary of proteins secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsh, W. and Sander, C. (1983) 'Dictionary of proteins secondary structure: pattern recognition of hydrogen-bonded and geometrical features', Biopolymers, Vol. 22, pp.2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsh, W.1    Sander, C.2
  • 15
    • 0001096627 scopus 로고
    • 2 in certain discrete distributions
    • 2 in certain discrete distributions', Biometrika, Vol. 36, pp.117-129.
    • (1949) Biometrika , vol.36 , pp. 117-129
    • Lancaster, M.B.1
  • 16
    • 0019317336 scopus 로고
    • Specific recognition in the tertiary structure of β-sheets of proteins
    • Lifson, S. and Sander, C. (1980) 'Specific recognition in the tertiary structure of β-sheets of proteins', J. Mol. Biol, Vol. 139, pp.627-639.
    • (1980) J. Mol. Biol , vol.139 , pp. 627-639
    • Lifson, S.1    Sander, C.2
  • 17
    • 11944262819 scopus 로고
    • Multiple hypothesis testing
    • Shaffer, J. (1995) 'Multiple hypothesis testing', Annu. Rev. Psychol., Vol. 46, pp.561-584.
    • (1995) Annu. Rev. Psychol. , vol.46 , pp. 561-584
    • Shaffer, J.1
  • 18
    • 0028792105 scopus 로고
    • Guidelines for protein design: The energetics of beta-sheet side-chain interactions
    • Smith, C.K. and Regan, L. (1995) 'Guidelines for protein design: the energetics of beta-sheet side-chain interactions', Science, Vol. 270, pp.980-982.
    • (1995) Science , vol.270 , pp. 980-982
    • Smith, C.K.1    Regan, L.2
  • 19
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey, J.D. (2002) 'A direct approach to false discovery rates', J. Roy. Statist. Soc. B, Vol. 64, pp.479-498.
    • (2002) J. Roy. Statist. Soc. B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 20
    • 0345822598 scopus 로고    scopus 로고
    • The positive false discovery rate: A Baysian interpretation and the q-value
    • Storey, J.D. (2003) 'The positive false discovery rate: a Baysian interpretation and the q-value', Annals of Statistics, Vol. 31, pp.2013-2035.
    • (2003) Annals of Statistics , vol.31 , pp. 2013-2035
    • Storey, J.D.1
  • 21
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J.D. and Tibshirani, R. (2003) 'Statistical significance for genomewide studies', Proc. Natl. Acad. Sci. USA, Vol. 100, pp.9440-9445.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 22
    • 1142273091 scopus 로고    scopus 로고
    • Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: A unifed approach
    • Storey, J.D., Taylor, J.E. and Siegmund, D. (2004) 'Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unifed approach', J. Roy. Statist. Soc. B, Vol. 66, pp.187-205.
    • (2004) J. Roy. Statist. Soc. B , vol.66 , pp. 187-205
    • Storey, J.D.1    Taylor, J.E.2    Siegmund, D.3
  • 23
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarray applied to the ionizing radiation response
    • Tusher, V.G., Tibshirani, R. and Chu, G. (2001) 'Significance analysis of microarray applied to the ionizing radiation response', Proc. Natl. Acad. Sci. USA, Vol. 98, pp.5116-5121.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 24
    • 0017572101 scopus 로고
    • The β-structure: Inter-strand correlations
    • von Heijne, G. and Blomberg, C. (1977) 'The β-structure: inter-strand correlations', J. Mol. Biol., Vol. 117, pp.821-824.
    • (1977) J. Mol. Biol. , vol.117 , pp. 821-824
    • Heijne, G.1    Blomberg, C.2
  • 25
    • 0017887068 scopus 로고
    • Some global β-sheet characteristics
    • von Heijne, G. and Blomberg, C. (1978) 'Some global β-sheet characteristics', Bipolymers, Vol. 17, pp.2033-2037.
    • (1978) Bipolymers , vol.17 , pp. 2033-2037
    • Heijne, G.1    Blomberg, C.2
  • 26
    • 0029058159 scopus 로고
    • An analysis of side-chain interactions and pair correlations within antiparallel beta-sheets: The differences between backbone hydrogen bonded and non-hydrogen-bonded residue pairs
    • Wouters, M.A. and Curmi, P.M.G. (1995) 'An analysis of side-chain interactions and pair correlations within antiparallel beta-sheets: the differences between backbone hydrogen bonded and non-hydrogen-bonded residue pairs', Proteins, Vol. 22, pp.119-131.
    • (1995) Proteins , vol.22 , pp. 119-131
    • Wouters, M.A.1    Curmi, P.M.G.2
  • 27
    • 0033472709 scopus 로고    scopus 로고
    • Resampling-based false discovery rate controlling multiple test procedures for correlated test statistics
    • Yekutieli, D. and Benjamini, Y. (1999) 'Resampling-based false discovery rate controlling multiple test procedures for correlated test statistics', J. Statistical Planning and Inference, Vol. 82, pp.171-196.
    • (1999) J. Statistical Planning and Inference , vol.82 , pp. 171-196
    • Yekutieli, D.1    Benjamini, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.