Cloning and characterization of lipopolysaccharide-induced tumor necrosis factor α factor promoter

FEMS Immunology and Medical Microbiology

Volumn 47, Issue 3, 2006, Pages 360-368

  Shiomi, Nobuyuki ^a   Myokai, Fumio ^a   Naruishi, Koji ^a   Oyaizu, Kosuke ^a   Senoo, Kyoko ^a   Yamaguchi, Tomoko ^a   Amar, Salomon ^b   Takashiba, Shogo ^a  

^a OKAYAMA UNIVERSITY   (Japan)

^b UNIVERSITY OF COLORADO ANSCHUTZ MEDICAL CAMPUS   (United States)

Author keywords

Electrophoretic mobility shift assay; Genomic cloning; LPS induced TNF factor; Promoter sequence; Reporter gene assay

Indexed keywords

COMPLEMENTARY DNA; DNA FRAGMENT; GENOMIC DNA; HEPATOCYTE NUCLEAR FACTOR 3ALPHA; HUMAN LIPOPOLYSACCHARIDE INDUCED TUMOR NECROSIS FACTOR ALPHA FACTOR; LIPOPOLYSACCHARIDE; NUCLEOTIDE; TRANSCRIPTION FACTOR; TUMOR NECROSIS FACTOR ALPHA; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; DNA SEQUENCE; GEL MOBILITY SHIFT ASSAY; GENETIC TRANSCRIPTION; LEUKEMIA CELL LINE; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; STATISTICAL SIGNIFICANCE;

5' FLANKING REGION; BASE SEQUENCE; BINDING SITES; CELL LINE, TUMOR; CELL NUCLEUS; CLONING, MOLECULAR; CONSENSUS SEQUENCE; DNA; HUMANS; KINETICS; LIPOPOLYSACCHARIDES; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; OLIGONUCLEOTIDES; PROMOTER REGIONS (GENETICS); RNA, MESSENGER; TRANSCRIPTION FACTORS; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION, GENETIC;

EID: 33745811705     PISSN: 09288244     EISSN: 1574695X     Source Type: Journal    
DOI: 10.1111/j.1574-695X.2006.00094.x     Document Type: Article

References (16)

1. Barnes WM (1994) PCR amplification of up to 35-kb DNA with high fidelity and high yield from λbacteriophage templates. Proc Natl Acad Sci USA 91: 2216-2220.
2. Cheng S, Fockler C, Barnes WM & Higuchi R (1994) Effective amplification of long targets from cloned inserts and human genomic DNA. Proc Natl Acad Sci USA 91: 5695-5699.
3. Chomczynski P & Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162: 156-159.
4. Costa RH, Grayson DR & Darnell JE Jr (1989) Multiple hepatocyte-enriched nuclear factors function in the regulation of transthyretin and α1-antitrypsin genes. Mol Cell Biol 9: 1415-1425.
5. Lai E, Prezioso VR, Smith E, Litvin O, Costa RH & Darnell JE Jr (1990) HNF-3α, a hepatocyte-enriched transcription factor of novel structure is regulated transcriptionally. Genes Dev 4: 1427-1436.
6. Maeda H, Fujimoto C, Haruki Y, Maeda T, Kokeguchi S, Petelin M, Arai H, Tanimoto I, Nishimura F & Takashiba S (2003) Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria. FEMS Immunol Med Microbiol 39: 81-86.
7. McKnight SL & Kingsbury R (1982) Transcriptional control signals of a eukaryotic protein-coding gene. Science 217: 316-324.
8. Mineshiba J, Myokai F, Mineshiba F, Matsuura K, Nishimura F & Takashiba S (2005) Transcriptional regulation of β-defensin-2 by lipopolysaccharide in cultured human cervical carcinoma (HeLa) cells. FEMS Immunol Med Microbiol 45: 37-44.
9. Myokai F, Takashiba S, Lebo R & Amar S (1999) A novel lipopolysaccharide-induced transcription factor regulating tumor necrosis factor α gene expression: molecular cloning, sequencing, characterization, and chromosomal assignment. Proc Natl Acad Sci USA 96: 4518-4523.
10. Pierce JC, Sternberg N & Sauer B (1992) A mouse genomic library in the bacteriophage P1 cloning system: organization and characterization. Mamm Genome 3: 550-558.
11. Sanger F, Nicklen S & Coulson A (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467.
12. Sawadogo M & Sentenac A (1990) RNA polymerase B (II) and general transcription factors. Ann Rev Biochem 59: 711-754.
13. Takashiba S, Van Dyke TE, Shapira L & Amar S (1995) Lipopolysaccharide-inducible and salicylate-sensitive nuclear factor(s) on human tumor necrosis factor alpha promoter. Infect Immun 63: 1529-1534.
14. Tang X, Fenton MJ & Amar S (2003) Identification and functional characterization of a novel binding site on TNF-α promoter. Proc Natl Acad Sci USA 100: 4096-4101.
15. Tang X, Marciano DL, Leeman SE & Amar S (2005) LPS induces the interaction of a transcription factor, LPS-induced TNF-α factor, and STAT6(B) with effects on multiple cytokines. Proc Natl Acad Sci USA 102: 5132-5137.
16. Towbin H, Staehelin T & Gordon J (1979) Electrophoretic transfer from polyacrylamide gels to nitrocellurose sheets: procedure and some applications. Proc Natl Acad Sci USA 76: 4350-4354.